Daryl W. Grunau
2c68b7f006
packages/umoci ( #12346 )
...
* bump eospac version
* Revert "bump eospac version"
This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.
* new package: umoci
* Package -> MakefilePackage
* add missing build phase
* relax expand=False requirement
2019-08-13 19:37:34 -05:00
Sinan
fcf6bb8f45
add new versions ( #12393 )
2019-08-13 19:35:02 -05:00
Sinan
53e12f66cf
add new version ( #12394 )
2019-08-13 19:34:34 -05:00
Sinan
bb5663701e
add new version ( #12395 )
2019-08-13 19:33:12 -05:00
Toyohisa Kameyama
d752ef38c9
subread: build on ARM. ( #12400 )
2019-08-13 19:23:52 -05:00
Ricardo Silva
5116312ca2
package/gromacs: simd optimizations autodetection for more versions ( #12402 )
...
* gromacs: fix simd detection for pre 2018 versions
* pre 2018 the cmake file was named differently
* fixed up post 2018 patch file which was non pretty
* Trim patch
2019-08-13 19:21:59 -05:00
健美猞猁
5429713eef
Add version 2.4.0 for cantera. ( #12405 )
2019-08-13 19:18:38 -05:00
Gregory Lee
aabdeb9b63
patch opa-psm2 to build with spack wrappers ( #12407 )
2019-08-13 19:13:21 -05:00
Daryl W. Grunau
c931757d02
Fix package gpgme dependency ( #12410 )
...
* bump eospac version
* Revert "bump eospac version"
This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.
* build depends on gnupg which provides gpgsm binary
2019-08-13 19:08:50 -05:00
Michael Kuhn
384281bf94
gcc: Add 9.2.0 ( #12411 )
2019-08-13 19:08:12 -05:00
Peter Scheibel
1f6befabb1
Fix "spack loads" when retrieving upstream modules ( #12203 )
...
Fixes #12062
406c791406c791
2019-08-13 11:09:40 -07:00
Tiziano Müller
95fec7adfc
CP2K/SIRIUS: add support for building with CUDA, fix CP2K build with MKL ( #11418 )
...
* cp2k/sirius: add CUDA support
* cp2k: fix building with MKL
* sirius: make sure to link against Spacks blas/lapack/scalapack
2019-08-13 19:59:08 +02:00
brietzke
68c176998a
new package: asagi: create package.py ( #11931 )
...
* Create package.py
* applied reviewer suggestions
* Update package.py
* remove CamelCase from variant names
* add comment on why fetching package via git
* found typo in variant to cmake-argumentlist translation
* rename variants to ~nonuma ~nompi to be in sync with cmake-args, refine mpi@3-dependency definition
* Revert "rename variants to ~nonuma ~nompi to be in sync with cmake-args, refine mpi@3-dependency definition"
This reverts commit 58e8cf7d93c5665f0b4b50228946857734716cef.
* remove version-preference
2019-08-13 11:13:41 -05:00
Sinan
bb6ec7fb40
Package/grass: fix iconv linking issue ( #12165 )
...
* fix iconv linking issue, package_grass fix linking iconv, add more comments
2019-08-12 13:45:05 -07:00
Owen Solberg
230678367c
singularity: update version to 3.3.0 ( #12295 )
...
* add checksum for singularity release 3.3.0
* update singularity doc URL
URL at the lbl.gov domain has message saying:
"This website is going away soon! Update your bookmarks!"
* add note about build log file for post-install step
* provide links to both 2.x and 3.x security docs
* remove whitespace. Passing flake8 confirmed locally this time :)
* add TODO comment for fakeroot support
2019-08-12 15:38:15 -05:00
Jean-Paul Pelteret
2cc89fbf69
New package: TexStudio ( #12301 )
...
* Poppler library: Add new versions
* Poppler library: Allow building with QT4
* Poppler library: Install header files
* Add patch to Poppler package
* Add new package: TexStudio
2019-08-12 14:48:28 -05:00
Russell J. Hewett
31f9135cbc
blaze: converted to CMakePackage ( #12357 )
...
The previous version does not properly install the required cmake
configuration files for blaze-lib, so find_package does not work
correctly.
This patch converts the blaze-lib package to use CMakePackage,
adds the required cmake dependency, and removes the install()
member function, which is not working correctly and is no longer
needed.
2019-08-12 14:47:54 -05:00
Geoffrey Oxberry
6de750d860
gtksourceview: new package ( #12387 )
2019-08-12 14:44:54 -05:00
Janne Blomqvist
490168be4d
openblas: fix target detection for cross-compiling ( #12390 )
...
In a review of a previous pull request (
https://github.com/spack/spack/pull/10713 ) it was mentioned that the
proper way to figure out the target architecture is via
spec.architecture.target. This patch fixes this for the openblas
package.
Signed-off-by: Janne Blomqvist <janne.blomqvist@aalto.fi>
2019-08-12 14:43:04 -05:00
Janne Blomqvist
820b220b22
openblas@0.3.7: New version ( #12391 )
...
This adds OpenBLAS 0.3.7 (released 2019-08-11).
2019-08-12 14:41:26 -05:00
Kelly (KT) Thompson
5b84d6dff1
Apply xl patch for cce@9: to fix cmake. ( #12392 )
2019-08-12 14:41:00 -05:00
Daryl W. Grunau
9538889f1c
packages/skopeo ( #12348 )
...
* bump eospac version
* Revert "bump eospac version"
This reverts commit 835b1f822d8c083f6ab9eb17222c00409e8eb3da.
* new package: skopeo
* address flake8 issues
* address adamjstewart's comments
* use the Executable class and undocumented 'str' feature for output
* Package -> MakefilePackage
* add missing build phase
* patch -> edit phase
2019-08-12 11:28:05 -05:00
Massimiliano Culpo
ab4b5deb97
bugfix: Python 2.6 parsing error ( #11867 )
...
Apparently shlex.split can't deal with unicode encoded characters in
Python2.6. The solution is to convert to str before calling the
function.
2019-08-11 13:00:36 -07:00
Seth R. Johnson
172fcb0225
Update SWIG versions and add Fortran fork ( #12185 )
...
* Add git repositories for SWIG and SWIG-Fortran
* Fix typo in documentation
* Move 'master' to top of SWIG version list
2019-08-11 12:58:12 -05:00
Glenn Johnson
30cf665d16
Fix py-matplotlib build with Intel compiler ( #12144 )
...
Not sure what happened between #5321 and now but the CC=CXX fix now
prevents py-matplotlib from building with the Intel compiler. I verified
with versions of py-matplotlib from 2.0.2 to 3.0.2 and intel-17.0.4 and
19.0.4 that py-matplotlib successfully builds with the Intel compiler
without that code.
2019-08-11 12:57:31 -05:00
Seth R. Johnson
52a737affe
Use correct GCC installation when installing clang with GCC ( #12381 )
2019-08-11 12:40:12 -05:00
Sinan
5532b8e617
new package: qwtpolar ( #12382 )
...
* create qwtpolar package
* patch config files so that qwtpolar successfully builds
* make flake8 happy
2019-08-11 12:39:58 -05:00
Frédéric Simonis
33bec18cc2
Add preCICE xSDK support ( #12356 )
...
* Add preCICE xSDK support
* Cleanup generation of cmake arguments
* Generalize numpy include
* Fix python spec
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Fix numpy spec
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-08-11 12:19:44 -05:00
Adam J. Stewart
0d4114b095
Add NCCL 2.4.8-1 ( #12362 )
2019-08-10 11:53:29 -05:00
Adam J. Stewart
c5c1d1db43
Port py-poster to Python 3 ( #12363 )
...
* Port py-poster to Python 3
* Forgot the patch
2019-08-10 11:53:15 -05:00
Adam J. Stewart
e69456bde2
Add py-clipboard package ( #12364 )
2019-08-10 11:52:52 -05:00
Adam J. Stewart
6e14e74014
Add py-gee-asset-manager package ( #12365 )
2019-08-10 11:52:38 -05:00
Adam J. Stewart
889b625452
Add py-geeadd package ( #12366 )
2019-08-10 11:52:24 -05:00
Adam J. Stewart
8e4d60645f
Add py-geeup package ( #12367 )
2019-08-10 11:52:10 -05:00
Adam J. Stewart
706d57bd23
Add py-google-api-core package ( #12368 )
2019-08-10 11:51:56 -05:00
Adam J. Stewart
09e0f1ad4e
Add py-google-cloud-core package ( #12369 )
2019-08-10 11:51:41 -05:00
Adam J. Stewart
3c54e55546
Add py-google-cloud-storage package ( #12370 )
2019-08-10 11:51:27 -05:00
Adam J. Stewart
a3cc7eb4f7
Add py-google-resumable-media package ( #12371 )
2019-08-10 11:51:12 -05:00
Adam J. Stewart
b329d5f27f
Add py-googleapis-common-protos package ( #12372 )
2019-08-10 11:50:58 -05:00
Adam J. Stewart
fbf386328c
Add py-oauth2client package ( #12373 )
2019-08-10 11:50:43 -05:00
Adam J. Stewart
1d0f61816a
Add py-pathlib package ( #12374 )
2019-08-10 11:50:24 -05:00
Adam J. Stewart
37e59cbd7e
Add py-pyperclip package ( #12375 )
2019-08-10 11:50:10 -05:00
Adam J. Stewart
572bc5cc77
Add py-pysmartdl package ( #12376 )
2019-08-10 11:49:55 -05:00
Adam J. Stewart
3601f1c825
Add py-retrying package ( #12377 )
2019-08-10 11:49:41 -05:00
Adam J. Stewart
25b3946e0b
Add py-selenium package ( #12378 )
2019-08-10 11:49:25 -05:00
Sajid Ali
48016366c8
modified: var/spack/repos/builtin/packages/libflame/package.py ( #12379 )
2019-08-10 11:48:58 -05:00
Cameron Smith
a4a30de8a1
libconfig: add version 1.7.1 ( #12324 )
...
* libconfig: add version 1.7.1
* move 1.7.1 above 1.6, latest version is preferred
2019-08-10 11:08:53 -05:00
Seth R. Johnson
54018b488a
Fix build for moab 4.9.2 on gcc8 ( #12328 )
...
```
5 errors found in build log:
609 CXX mbpart.o
610 CXX quality.o
611 CXX umr.o
612 CXX merge.o
613 CXX parread.o
614 mbpart.cpp: In function 'int main(int, char**)':
>> 615 mbpart.cpp:494:19: error: no match for 'operator<<' (operand types
are 'std::ostream' {aka 'std::basic_ostream<char>'} and 'std::ostri
ngstream' {aka 'std::__cxx11::basic_ostringstream<char>'})
616 std::cerr << tmp_output_file << " : failed to write file."
<< std::endl;
617 ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
618 mbpart.cpp:494:19: note: candidate: 'operator<<(int, int)' <built-i
n>
619 mbpart.cpp:494:19: note: no known conversion for argument 2 from
'std::ostringstream' {aka 'std::__cxx11::basic_ostringstream<char>'
} to 'int'
620 In file included from /software/user_tools/centos-7.2.1511/cades-ns
ed-spack/opt/spack/linux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbum
ioobdbkw4rwfyn2givi4nyvwq/include/c++/8.2.0/iterator:64,
621 from /software/user_tools/centos-7.2.1511/cades-ns
ed-spack/var/spack/stage/moab-4.9.2-77uuzmj4ofb7z7vz6m25sftyks7p5do
7/spack-src/src/moab/Range.hpp:167,
...
886 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream:682:5: note: candidate: 'template<cla
ss _Ostream, class _Tp> typename std::enable_if<std::__and_<std::__
not_<std::is_lvalue_reference<_Tp> >, std::__is_convertible_to_basi
c_ostream<_Ostream>, std::__is_insertable<typename std::__is_conver
tible_to_basic_ostream<_Tp>::__ostream_type, const _Tp&, void> >::v
alue, typename std::__is_convertible_to_basic_ostream<_Tp>::__ostre
am_type>::type std::operator<<(_Ostream&&, const _Tp&)'
887 operator<<(_Ostream&& __os, const _Tp& __x)
888 ^~~~~~~~
889 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream:682:5: note: template argument dedu
ction/substitution failed:
890 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream: In substitution of 'template<class _
Ostream, class _Tp> typename std::enable_if<std::__and_<std::__not_
<std::is_lvalue_reference<_Tp> >, std::__is_convertible_to_basic_os
tream<_Ostream>, std::__is_insertable<typename std::__is_convertibl
e_to_basic_ostream<_Tp>::__ostream_type, const _Tp&, void> >::value
, typename std::__is_convertible_to_basic_ostream<_Tp>::__ostream_t
ype>::type std::operator<<(_Ostream&&, const _Tp&) [with _Ostream =
std::basic_ostream<char>&; _Tp = std::__cxx11::basic_ostringstream
<char>]':
891 mbpart.cpp:494:22: required from here
>> 892 /software/user_tools/centos-7.2.1511/cades-nsed-spack/opt/spack/lin
ux-centos7-x86_64/gcc-4.8.5/gcc-8.2.0-uc6sbumioobdbkw4rwfyn2givi4ny
vwq/include/c++/8.2.0/ostream:682:5: error: no type named 'type' in
'struct std::enable_if<false, std::basic_ostream<char>&>'
893 CXXLD mbdepth
894 CXXLD hexmodops
>> 895 make[2]: *** [mbpart.o] Error 1
896 make[2]: *** Waiting for unfinished jobs....
897 make[2]: Leaving directory `/localscratch/tmp/s3j-spack/spack-stage
/spack-stage-NT13kT/spack-src/tools'
>> 898 make[1]: *** [all-recursive] Error 1
899 make[1]: Leaving directory `/localscratch/tmp/s3j-spack/spack-stage
/spack-stage-NT13kT/spack-src/tools'
>> 900 make: *** [all-recursive] Error 1
```
2019-08-10 11:08:13 -05:00
Adam J. Stewart
f9e6f0fb62
py-numexpr: switch from PyPI to GitHub download ( #12360 )
2019-08-09 22:27:34 -05:00
Ricardo Silva
c5849ce04f
gromacs: fix CPU optimizations detection (simd=auto) ( #12354 )
...
* SL-637
* https://redmine.gromacs.org/issues/2927
* tested with cmake 3.14.4 and 3.15.1
2019-08-09 21:38:16 -05:00
