Commit graph

2557 commits

Author SHA1 Message Date
Erik Schnetter
f555b8110d Charm++: Ignore compiler warnings while configuring (#1981) 2016-10-11 00:45:01 -07:00
Kelly Thompson
1891ce3545 Trilinos: Use more flexible option for locating the BLAS library directory. (#1987)
+ This change fixes a problem that manifests when trilinos is built against a
  MKL installation defined as an external package. In this scenario, the MKL
  libraries are found one directory deeper than for the case where spack
  provides MKL. The extra directory is a platform name like 'intel64'.
+ The changes in this PR were recommended by contributor @davydden. I
  implemented and tested with intel@16.0.3. These changes fix the issue I
  reported. I did not attempt building trilinos against other BLAS
  implementations.
+ fixes #1923
2016-10-11 00:42:59 -07:00
Pramod Kumbhar
afd5d6b5cd hpx5 version update (#1967) 2016-10-11 00:36:31 -07:00
Geoffrey Oxberry
9a05ffea27 Mfem 3.2 (#1202)
* mfem: add tarball extension

Add tarball extension as a result of a feature added in PR#1926, which
fixes earlier issues in this PR (PR#1202). Prior to adding this feature,
Spack would not autodetect the extension of the tarball downloaded from
the redirected, shorted Google URL, requiring a messy hack. This hack
worked for mfem version 3.1, but led to errors when adding mfem version
3.2 because the files downloaded from Google did not contain the package
name, version number, or extension. Adding the extension enables Spack
to rename the tarball downloaded from Google to a sensible name that is
compatible with its filename parsing algorithms so that Spack "does the
right thing" (detects that the file is a GZipped tarball, decompresses
it, runs GNU Make) in fetching and staging the package.

* mfem: add linkage to KLU & BTF

Add linkage to the KLU & BTF solvers, which are now enabled in MFEM for
versions 3.2 and later.

* mfem: Add superlu-dist variant

Add linkage to SuperLU_DIST, which is a new linear solver interface for
MFEM versions 3.2 and later.

* mfem: add netcdf variant for cubit mesh support

Add NetCDF variant for MFEM versions 3.2 and later; installing the
NetCDF interfaces enables CUBIT mesh support.
2016-10-11 00:33:26 -07:00
Kelly Thompson
29fc9cd22c Update package to use MPI compile wrappers as specified in MPI package. (#1985)
+ Previouly, these strings were hard coded to 'mpicc', 'mpic++', and 'mpifort'.
2016-10-10 15:33:00 -07:00
Denis Davydov
c2ca8693e9 fix blas-lapack in scipy and numpy (#1949)
* fix blas-lapack in scipy and numpy

* py-numpy: do not set rpath on macOS

* py-scipy: do not set Blas/Lapack. This appears to be picked up from py-numpy

* py-numpy: don't write rpath= in Sierra only

* py-numpy: add a link to build notes
2016-10-10 12:38:44 -07:00
Erik Schnetter
377ac68690 Correct Charm++ install procedure (#1957)
Charm++ only creates symbolic links instead of copying files. Correct this.
2016-10-10 09:13:20 -07:00
Jean-Paul Pelteret
d3daa829f0 Added symengine and associated packages (#1885)
Symengine and associated packages
2016-10-07 22:45:24 -07:00
Todd Gamblin
dbc864c9db Restore default RPATH settings but allow packages to limit to immediate deps. (#1954)
- Some packages (netcdf) NEED RPATHs for transitive deps.
- Others (dealii) will exceed OS limits when the DAG is too large.
2016-10-06 15:57:23 -07:00
Denis Davydov
9683e0df07 atlas: add 3.10.3 (#1952) 2016-10-06 15:23:18 -07:00
Joseph Ciurej
82fcc5e1de Feature Proposal : Make All Python Extensions User Configuration Independent (#1435)
* Updated all Python extension packages to use 'setup_py' on install.

* Fixed a few minor style issues with the updated Python packages.
2016-10-06 14:43:49 -07:00
Sergey Kosukhin
ebef9628a3 Update gmp: fixed an issue with intel compiler. (#1898) 2016-10-06 12:49:03 -07:00
Jay
6e9353f1a8 Updated nettle to have m4 as an immediate dependency (#1946)
* Updated nettle to have m4 as an immediate dependency to match new PATH
construction logic which only includes immediate dependencies.

* Update package.py
2016-10-06 11:50:50 -07:00
James Wynne III
7dc11472bf Sqlite ppc64le configure build guess fix (#1684)
* Added check for ppc64le because configure cant guess the build type for rhel on ppc64le

Expand/clarify description of dependency types

Refactored getting the arch so that its less verbose

* Fixed flake8 issues
2016-10-06 02:48:05 -07:00
Sergey Kosukhin
92ca6d6423 Update pixman: mmx is disabled only for MacOS. (#1896) 2016-10-06 02:43:34 -07:00
Sergey Kosukhin
4cce23ea89 Update libtiff: updated homepage and fetch urls. (#1895)
* Update libtiff: updated homepage and fetch urls.

* Update libtiff: new version 4.0.6.
2016-10-06 02:43:23 -07:00
Elizabeth Fischer
264604df3e cgal: build out of source. (#1918)
* cgal: build out of source.

* Simplify cmake out-of-source.
2016-10-06 02:36:27 -07:00
Jeffrey Salmond
a648dc6b33 add python options to vtk package (#1931) 2016-10-06 02:29:25 -07:00
Elizabeth Fischer
2966f174ae mumps: Add alternate download location (in comments) (#1919) 2016-10-05 23:15:38 -07:00
Adam J. Stewart
6ee020cea4 Add package for CONVERGE CFD (#1905) 2016-10-05 10:37:50 -07:00
Adam J. Stewart
95b07c365c Add latest versions, resolve variant resolution bug (#1909) 2016-10-05 10:37:35 -07:00
Elizabeth Fischer
42c69b3809 everytrace: New package (#1543)
* everytrace: New package

Everytrace ensures that stack trace is obtained every time a program exits, for whatever reason.

* everytrace: Change CMake to build dependency

* Renamed to everytrace-example, flake8 and copyright issues.

* flake8

* Missing type=build
2016-10-05 10:03:05 -07:00
Adam J. Stewart
d5e5e4ed1a Add missing dependencies for Flake8 (#1883)
* Warn user if flake8 can't find setuptools

* Add missing dependencies of flake8

* Updates to py-autopep8, make packages activateable

* Check for presence of setuptools for Sphinx too

* Fix bug in order of commands
2016-10-05 10:00:31 -07:00
Axel Huebl
ac3e21f8d4 PNGwriter, libSplash: Add master version (#1744)
* PNGwriter, libSplash: Add `master` version

* PNGwriter, libSplash: Add `dev` versions

Can be used for now, `develop` is currently discouraged.
2016-10-05 06:46:20 -07:00
Denis Davydov
4e5d340665 boost: set 1.61 as preffered until 1.62 is fixed (#1908) 2016-10-05 05:16:06 -07:00
Pramod Kumbhar
9daafc32f1 Packages for Darshan I/O performance characterization tool from ANL (#1900) 2016-10-04 14:40:35 -07:00
Adam J. Stewart
7806fded3e Update documentation URL after switch to readthedocs (#1901) 2016-10-04 11:47:25 -07:00
Sergey Kosukhin
1d981ebd50 A set of tools used in climate modeling and numerical weather prediction. (#1317)
* Update grib-api: switched to cmake building system.

* Update harfbuzz: added pkg-config dependency.

* Update pango: added pkg-config dependency.

* Add libemos package.

* Add Magics (from ECMWF) package.

* Revert "Variant for building cdo without mpi (#1638)":
CDO does not use MPI.

This reverts commit 079d063c6d.

* Update CDO package: full featured implementation.

* Update magics: added python as build dependency.

* Update cdo: added disabling configuration options.
2016-10-04 09:29:22 -07:00
Ivo Jimenez
d36028cff4 Adds mpip package (#1886) 2016-10-04 01:30:52 -07:00
Ivo Jimenez
2c701d372e Adds lulesh package (#1887) 2016-10-04 01:28:23 -07:00
Pramod Kumbhar
e546d6246f Spack package for HPCToolkit (#1892)
* Spack package for HPCToolkit (performance analysis tool)

* Correction for PR comments, make flake8 happy

* update note / comments
2016-10-04 01:02:50 -07:00
Massimiliano Culpo
50fcade81b cp2k : added support for libint, fixed compilation issues on elpa (#1889) 2016-10-03 08:25:36 -07:00
Geoffrey Oxberry
df79ba0dcf gcc: fix darwin dispatch/object.h header issue (#1518)
Fixes #1203. Apple ships headers in Yosemite (and possibly earlier) that
are gcc-incompatible, but compile fine with clang. The fix is to copy
the offending system header from /usr/include/${REST_OF_HEADER_PATH} to
${GCC_PREFIX}/include/${REST_OF_HEADER_PATH} and replace the non-gcc-
compatible features with gcc-compatible equivalents.

See https://github.com/hashdist/hashstack/pull/771/files for
inspiration, and
http://hamelot.io/programming/osx-gcc-dispatch_block_t-has-not-been-declared-invalid-typedef/
for a description of the header issue.
2016-10-02 18:54:43 -07:00
Nicolas Richart
16f99bd0b2 Adding latest version of fenics (#1528)
* Adding last version of fenics and making trilinos not ambiguous on hdf5

* forcing fenics to ignore hdf5 cxx

* Adding deptypes and correcting the hdf5 patch

* flake8 corrections

* cleaning some useless code
2016-10-02 18:51:34 -07:00
Kelly Thompson
621a4d637d Provide newer versions of llvm (3.8.1, 3.9.0) (#1765)
* Provide new versions of llvm.

+ Provide file list and md5 hashes for 3.8.1 and 3.9.0.
+ Clean up indentation for the 'releases' data structure to improve
  consistency.

* Adding a block of code to the 'resources' structure for cfe.

* Merge cfe and clang resources into single entity.
2016-10-02 18:50:42 -07:00
Alfredo Adolfo Gimenez
1ea9582218 Added hadoop, spark, and variant spark+hadoop (#1833)
* Added hadoop, spark, and variant spark+hadoop

* Docstrings, dependency types, urls, copyright

* Flake8 fixes, link dependency for hadoop

* Build type for spark, env problem setting JAVA_HOME
2016-10-02 18:49:30 -07:00
Erik Schnetter
b22956bab2 git: Don't link against -lrt on Darwin (#1877)
There is no librt on Darwin, and it's not necessary either.
2016-10-02 18:37:45 -07:00
Erik Schnetter
28b48f3e1a Update PAPI to 5.5.0 (#1878) 2016-10-02 18:37:26 -07:00
Erik Schnetter
b2ff9dbcd4 Update tmux to 2.3.0 (#1879) 2016-10-02 18:37:17 -07:00
Kelly Thompson
051c5dbc27 New package: libquo (#1880)
* New package: libquo

libquo is a high-level, easy to use programming interface tailored specifically
for MPI/MPI+X codes that may benefit from evolving process binding policies
during their execution. QUO allows for arbitrary process binding policies to
be enacted and reverted during the execution of an MPI/MPI+X application as
different computational phases are entered and exited, respectively.

https://github.com/losalamos/libquo

* Remove use of 'which' and fix style non-conformance.
2016-10-02 18:36:48 -07:00
Bruno Turcksin
e854e053e4 Add boost 1.62.0 (#1882) 2016-10-02 18:36:31 -07:00
Jean-Paul Pelteret
c86d4c8920 Added bash-completion package (#951) 2016-10-02 17:50:39 -07:00
Pramod Kumbhar
4b34ba1035 pdt url change to download full installer tarball (#1881) 2016-09-30 14:31:28 -07:00
Pramod Kumbhar
6c627dbac9 Add cube variant for building GUI component with qt, parallel built supported (#1525) 2016-09-29 15:37:35 -04:00
Pramod Kumbhar
6ec46ca802 updated to latest available package and fixed installation issue (old packages are no longer available for download) (#1523) 2016-09-29 15:37:07 -04:00
Mitchell Devlin
86cad961e5 added libxstream (#1454) 2016-09-29 15:36:37 -04:00
Adam J. Stewart
deb1cb4805 Add libint package (#1264)
* Add libint package

* Add Intel optimization flags recommended by CP2K

* Add new version and Intel compiler optimization flags for libxc

* Add older version of libint

* Libint depends on GMP C++ library
2016-09-29 15:35:10 -04:00
Robert D. French
a77b48f491 Library for manipulating grib1 and grib2 files (#1736)
Pro tips from @adamjstewart:
* line too long in package description
* name it grib-api instead of grib_api
* depend on netcdf without reference to unnecessary constraints
2016-09-28 17:02:29 -04:00
Elizabeth Fischer
3352889d73 py-pil: Protect against building with Python3. (#1868)
* py-pil: Does not build with Python3.

* Set py-pillow to be the default pil provider

* Update package.py

* Change to comments requested by adamjstewart

* Remove version constraint from extends(), avoid a Spack bug.
2016-09-28 16:51:41 -04:00
Erik Schnetter
4040792501 Update Qthreads to 1.11 (#1863) 2016-09-28 15:22:02 -04:00