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Author SHA1 Message Date
Matt Belhorn
661708b7fa Fixes Flake8 indentation errors. 2016-08-01 17:27:33 -04:00
Matt Belhorn
ae167c09fc Prefers bash over sh. 
Assuming a bash interactive environment will be correctly formed on login, we
should prefer to probe the environment using a shell that reports itself as
`bash` instead of `sh` which may not source files that set the
environment modules in statements like:

```
case "$is" in
bash) test -s /etc/bash.bashrc.local && . /etc/bash.bashrc.local ;;
ksh)  test -s /etc/ksh.kshrc.local   && . /etc/ksh.kshrc.local ;;
zsh)  test -s /etc/zsh.zshrc.local   && . /etc/zsh.zshrc.local ;;
ash)  test -s /etc/ash.ashrc.local   && . /etc/ash.ashrc.local
esac
test -s /etc/sh.shrc.local && . /etc/sh.shrc.local
```
 2016-08-01 17:17:24 -04:00
becker33
14d861a41c Merge pull request #1414 from adamjstewart/fixes/filter_file 
Fix backup=True for filter_file
 2016-08-01 14:10:59 -07:00
Matt Belhorn
e864d27641 Replaces bash-ism source for POSIX-compliant . 
Change is made in order to use `/bin/sh` on systems where `/bin/sh` is not
simply an alias for `/bin/bash --norc`.
 2016-08-01 17:04:09 -04:00
becker33
b892cebe8a Merge pull request #1343 from glennpj/r_unfilter 
R extension dependencies with compiler wrapper
 2016-08-01 13:51:13 -07:00
becker33
49e47966a8 Merge pull request #1357 from hartzell/patch-6 
Fix doc for install_tree (cut/paste error)
 2016-08-01 13:45:20 -07:00
becker33
e861e35acf Merge pull request #1234 from mwilliammyers/package-opencv 
Update opencv package
 2016-08-01 13:44:31 -07:00
becker33
1847aa035d Merge pull request #1348 from glennpj/rcurl 
r-curl update and changed remote archive
 2016-08-01 13:38:38 -07:00
becker33
630ff6871d Merge pull request #1346 from glennpj/url_list_fetch 
Url list fetch
 2016-08-01 13:37:57 -07:00
becker33
94238eebfa Merge pull request #1381 from davydden/pkg/mkl_linux 
MKL linux fixes
 2016-08-01 13:36:10 -07:00
Adam J. Stewart
5b79f0d04a Fix backup=True for filter_file 2016-08-01 15:35:02 -05:00
becker33
dc9fcea989 Merge pull request #1365 from hartzell/feature/add-package-for-tree 
Add package for tree
 2016-08-01 13:21:09 -07:00
becker33
15514792d5 Merge pull request #1374 from hartzell/bug/fix-jdk-import-of-distutils 
Bug: fix jdk package's use of distutils
 2016-08-01 13:20:44 -07:00
becker33
851bc506e4 Merge pull request #1367 from adamjstewart/features/pgi 
Add latest version of PGI
 2016-08-01 13:07:35 -07:00
becker33
932300256c Merge pull request #1413 from mdevlin1/fixes/libxsmm 
Fixed libxsmm package
 2016-08-01 13:06:05 -07:00
becker33
6361f5c2d4 Merge pull request #1359 from sknigh/libhio 
added libhio package
 2016-08-01 13:05:29 -07:00
Mitchell Devlin
2d51ea5da4 fixed libxsmm makefile filter 2016-08-01 14:38:16 -05:00
Adam J. Stewart
fed7ba1dab Add latest version of PGI 2016-08-01 13:42:00 -05:00
Glenn Johnson
19578d954f Fix flake8 line length errors 2016-08-01 13:37:42 -05:00
Adam J. Stewart
ab885a5397 Allow git to depend on gettext now that it works 2016-08-01 13:35:22 -05:00
Adam J. Stewart
4014a29d2b Use proper deptype so that spack activate works 2016-08-01 13:35:22 -05:00
Adam J. Stewart
b4cd2a85df Re-add trailing whitespace in patch 2016-08-01 13:35:22 -05:00
Adam J. Stewart
f5aed63b0b pkg-config should be a build dependency only 2016-08-01 13:35:22 -05:00
Adam J. Stewart
5cac0a528c Fix undefined symbols by building shared libraries 2016-08-01 13:35:22 -05:00
Adam J. Stewart
bdb64c2e39 Tell MEEP where to find libctl 2016-08-01 13:35:22 -05:00
Adam J. Stewart
0903ae0599 Final fixes to get libctl working 2016-08-01 13:35:22 -05:00
Adam J. Stewart
1e3a5d4e26 Final fixes to get guile to build 2016-08-01 13:35:21 -05:00
Adam J. Stewart
6db99a4fe7 Rename gc => bdw-gc, fix libunistring bug 2016-08-01 13:35:21 -05:00
Adam J. Stewart
5b1a882fc2 Update meep's url_for_version 2016-08-01 13:35:21 -05:00
Adam J. Stewart
a2578c21e4 Supply flags to bdist 2016-08-01 13:35:21 -05:00
Adam J. Stewart
8d0758fc4c Allow py-meep to link properly 2016-08-01 13:35:21 -05:00
Adam J. Stewart
880cbb2217 Better testing for MEEP 2016-08-01 13:35:21 -05:00
Adam J. Stewart
3b4820f290 Patch pkg-config and update installs for various packages 2016-08-01 13:35:21 -05:00
Adam J. Stewart
9e05fdf4a1 Bug fixes 2016-08-01 13:35:20 -05:00
Adam J. Stewart
7e53f4328f Add py-meep package and dependencies 2016-08-01 13:35:20 -05:00
becker33
e470478dc1 Merge pull request #1363 from hartzell/feature/add-package-for-cask 
Add package for cask
 2016-08-01 11:08:13 -07:00
George Hartzell
7d303afd64 Address flake8 issue 2016-08-01 13:42:55 -04:00
George Hartzell
1552ed943a Add package for cask 
Add a package for cask, the emacs project/dependency management tool.

Based on [Homebrew's formula][brew].

[brew]: https://github.com/Homebrew/homebrew-core/blob/master/Formula/cask.rb
 2016-08-01 13:41:28 -04:00
George Hartzell
31b7580b76 Fix jdk package's use of distutils 
See issue #1364.  @citibeth's fix works fine.
 2016-08-01 13:33:27 -04:00
becker33
cc3fc2ba4c Merge pull request #1322 from mdevlin1/feature/libxsmm 
Add libxsmm package
 2016-08-01 09:56:09 -07:00
becker33
0ce54c99af Merge pull request #1383 from epfl-scitas/packages/cp2k 
cp2k : added package
 2016-08-01 09:35:50 -07:00
Matt Belhorn
aaa5c9e8a4 Writes default module list to terminal when debugging. 2016-08-01 12:05:29 -04:00
Paul Hopkins
cca240c8f9 Add concretize_preferences tests 2016-08-01 16:18:11 +01:00
alalazo
ec09dfe5d1 cp2k : added package 2016-08-01 10:41:33 +02:00
Todd Gamblin
fbbb82259a Merge pull request #1407 from glennpj/r-ncdf4 
New package - r-ncdf4
 2016-07-31 22:15:52 -07:00
Todd Gamblin
ea11aab71f Merge pull request #1406 from glennpj/r-np 
New package - r-np
 2016-07-31 22:15:37 -07:00
Todd Gamblin
2042c94a6c Merge pull request #1405 from glennpj/r-survey 
New package - r-survey
 2016-07-31 22:15:09 -07:00
Todd Gamblin
64be8a80b2 Merge pull request #1404 from glennpj/r-tarifx 
New package - r-tarifx
 2016-07-31 22:14:56 -07:00
Todd Gamblin
7185fe2876 Merge pull request #1403 from glennpj/r-e1071 
New package - r-e1071
 2016-07-31 22:14:40 -07:00
Todd Gamblin
0724eba935 Merge pull request #1402 from glennpj/r-plotrix 
New package - r-plotrix
 2016-07-31 22:14:25 -07:00