Commit graph

4476 commits

Author SHA1 Message Date
albestro
02b64c8903
let intel consider cray-mpich as mpich (#21512) 2021-02-05 17:55:39 +00:00
Adam J. Stewart
ba70f90ee0
Fix usage of PythonPackage.test outside of PythonPackage (#20555) 2021-02-04 11:00:37 -06:00
Adam J. Stewart
df5992293a
Python: add maintainer(s) (#21125)
* Python: add maintainer(s)

* Fix unit tests
2021-02-04 10:00:21 -06:00
Massimiliano Culpo
694d633a2c
spack external find: allow to search by tags (#21407)
This commit adds an option to the `external find`
command that allows it to search by tags. In this
way group of executables with common purposes can
be grouped under a single name and a simple command
can be used to detect all of them.

As an example introduce the 'build-tools' tag to
search for common development tools on a system
2021-02-04 13:17:32 +01:00
Massimiliano Culpo
ba42c36f00
concretizer: simplify "fact" method (#21148)
The "fact" method before was dealing with multiple facts
registered per call, which was used when we were emitting
grounded rules from knowledge of the problem instance.

Now that the encoding is changed we can simplify the method
to deal only with a single fact per call.
2021-02-03 10:12:03 -08:00
Greg Becker
7dcf3f7aed
add intel oneapi to compiler/pkg translations (#21448) 2021-02-02 19:11:51 +00:00
Adam J. Stewart
b597cbe1c0
PythonPackage: fewer phases (#20738) 2021-02-01 12:48:45 -06:00
Adam J. Stewart
1d636bed6a
R: add maintainer(s) (#21119)
* R: add maintainer(s)

* Add maintainer to base class
2021-02-01 11:33:33 -06:00
Adam J. Stewart
40a40e0265
Python 3.10 support: collections.abc (#20441) 2021-02-01 11:30:25 -06:00
Yang Zongze
f8124369f9
Print groups properly for spack find -d (#20028) 2021-01-29 11:05:36 -08:00
Adam J. Stewart
eeddaaea52
Make git fetching even quieter (for git v1.7.2+)(#21013) 2021-01-28 20:41:05 +01:00
Sergey Kosukhin
4d7a9df810
Add a context wrapper for mtime preservation (#21258)
Sometimes we need to patch a file that is a dependency for some other
automatically generated file that comes in a release tarball. As a
result, make tries to regenerate the dependent file using additional
tools (e.g. help2man), which would not be needed otherwise.

In some cases, it's preferable to avoid that (e.g. see #21255). A way
to do that is to save the modification timestamps before patching and
restoring them afterwards. This PR introduces a context wrapper that
does that.
2021-01-27 11:41:07 -08:00
Mark C. Miller
f766585882
Doc default behavior of install tests (#21309)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-01-27 09:08:27 -08:00
Adam J. Stewart
aa8e026242
spack setup: remove the command for v0.17.0 (#20277)
spack setup was deprecated in 0.16 and will be removed in 0.17

Follow-up to #18240
2021-01-27 09:24:09 +01:00
Tom Scogland
12eb4a146f
use module and package flags to get more correct mypy behavior (#21225)
The first of my two upstream patches to mypy landed in the 0.800 tag that was released this morning, which lets us use module and package parameters with a .mypy.ini file that has a files key. This uses those parameters to check all of spack in style, but leaves the packages out for now since they are still very, very broken. If no package has been modified, the packages are not checked, but if one has they are. Includes some fixes for the log tests since they were not type checking.

Should also fix all failures related to "duplicate module named package" errors.

Hopefully the next drop of mypy will include my other patch so we can just specify the modules and packages in the config file to begin with, but for now we'll have to live with a bare mypy doing a check of the libs but not the packages.

* use module and package flags to check packages properly
* stop checking package files, use package flag for libs

The packages are not type checkable yet, need to finish out another PR
before they can be.  The previous commit also didn't check the libraries
properly, this one does.
2021-01-22 16:24:15 -08:00
AMD Toolchain Support
2c1bb64594
Added @property stdcxx_libs to return -lstdc++ for AOCC compiler (#21145) 2021-01-22 09:58:04 -06:00
Tamara Dahlgren
6b13909cc1
docs: Update the CudaPackage (build system) description (#20742)
Co-authored-by: Axel Huebl <axel.huebl@plasma.ninja>
2021-01-21 12:43:21 -08:00
Tamara Dahlgren
25bab31bc8
Added ROCmPackage (build system) documentation (#20743) 2021-01-21 10:46:39 -08:00
eugeneswalker
7f86cc87b0
store sbang_install_path in buildinfo, use for subsequent relocation (#20768) 2021-01-20 12:43:07 -08:00
Nathan Hanford
ebc871abbf
[WIP] relocate.py: parallelize test replacement logic (#19690)
* sbang pushed back to callers;
star moved to util.lang

* updated unit test

* sbang test moved; local tests pass

Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
2021-01-20 09:17:47 -08:00
Robert Cohn
09ee3f8d8e
add required libs for sycl programs (#20728) 2021-01-18 23:15:24 -06:00
Danny Taller
74b2c85b41
improve documentation for Rocm (hip amd builds) (#20812)
* improve documentation
2021-01-14 08:54:58 -08:00
Massimiliano Culpo
0bd76ac9e6 concretizer: require at least a dependency type to say the dependency holds
fixes #20784

Similarly to the previous bug, here we were deducing
conditions to be imposed on nodes that were not part
of the DAG.
2021-01-12 22:23:39 -08:00
Massimiliano Culpo
ed8fe68cf2 concretizer: dependency conditions cannot hold if package is external
fixes #20736

Before this one line fix we were erroneously deducing
that dependency conditions hold even if a package
was external.

This may result in answer sets that contain imposed
conditions on a node without the node being present
in the DAG, hence #20736.
2021-01-12 22:23:39 -08:00
Robert Underwood
823ab32c10
restore ability of dev-build to skip patches (#20351)
At some point in the past, the skip_patch argument was removed
from the call to package.do_install() this broke the --skip-patch
flag on the dev-build command.
2021-01-12 14:32:04 -06:00
Adam J. Stewart
881bdd5b9e
Package Repositories docs: num packages has grown (#20735) 2021-01-11 11:00:14 +01:00
Tamara Dahlgren
31f26daf10
Update the docs footer copyright (#20741) 2021-01-11 08:00:08 +01:00
eugeneswalker
6157854de6
fix gpg user rundir check (#20705) 2021-01-06 12:29:00 -08:00
Massimiliano Culpo
0111a18b23 concretizer: make rules on virtual packages more linear
fixes #20679

In this refactor we have a single cardinality rule on the
provider, which triggers a rule transforming a dependency
on a virtual package into a dependency on the provider of
the virtual.
2021-01-05 16:59:15 -08:00
Vanessasaurus
67ce1939a3
spack python: allow use of IPython (#20329)
This adds a -i option to "spack python" which allows use of the
IPython interpreter; it can be used with "spack python -i ipython".
This assumes it is available in the Python instance used to run
Spack (i.e. that you can "import IPython").
2021-01-05 16:54:47 -08:00
Greg Becker
61c1b71d38
bugfix for target adjustments on target ranges (#20537) 2021-01-05 12:27:13 -08:00
Todd Gamblin
5ac05db917
concretizer: use consistent naming for compiler predicates (#20677)
Every other predicate in the concretizer uses a `_set` suffix to
implement user- or package-supplied settings, but compiler settings use a
`_hard` suffix for this. There's no difference in how they're used, so
make the names the same.

- [x] change `node_compiler_hard` to `node_compiler_set`
- [x] change `node_compiler_version_hard` to `node_compiler_version_set`
2021-01-05 08:41:01 +01:00
Todd Gamblin
9c941bb706 concretizer: simplify handling of virtual version constraints
Previously, the concretizer handled version constraints by comparing all
pairs of constraints and ensuring they satisfied each other. This led to
INCONSISTENT ressults from clingo, due to ambiguous semantics like:

    version_constraint_satisfies("mpi", ":1", ":3")
    version_constraint_satisfies("mpi", ":3", ":1")

To get around this, we introduce possible (fake) versions for virtuals,
based on their constraints. Essentially, we add any Versions,
VersionRange endpoints, and all such Versions and endpoints from
VersionLists to the constraint. Virtuals will have one of these synthetic
versions "picked" by the solver. This also allows us to remove a special
case from handling of `version_satisfies/3` -- virtuals now work just
like regular packages.
2021-01-04 14:51:10 -08:00
Todd Gamblin
a1ed71f7e4 concretizer: remove rule generation code from concretizer
Our program only generates facts now, so remove all unused code related
to generating cardinality constraints and rules.
2021-01-04 14:51:10 -08:00
Todd Gamblin
0ce08640e0 concretizer: convert virtuals to facts; move all rules to concretize.lp
This converts the virtual handling in the new concretizer from
already-ground rules to facts. This is the last thing that needs to be
refactored, and it converts the entire concretizer to just use facts.

The previous way of handling virtuals hinged on rules involving
`single_provider_for` facts that were tied to the virtual and a version
range. The new method uses the condition pattern we've been using for
dependencies, externals, and conflicts.

To handle virtuals as conditions, we impose constraints on "fake" virtual
specs in the logic program. i.e., `version_satisfies("mpi", "2.0:",
"2.0")` is legal whereas before we wouldn't have seen something like
this. Currently, constriants are only handled on versions -- we don't
handle variants or anything else yet, but they key change here is that we
*could*. For a long time, virtual handling in Spack has only dealt with
versions, and we'd like to be able to handle variants as well. We could
easily add an integrity constraint to handle variants like the one we use
for versions.

One issue with the implementation here is that virtual packages don't
actually declare possible versions like regular packages do. To get
around that, we implement an integrity constraint like this:

    :- virtual_node(Virtual),
       version_satisfies(Virtual, V1), version_satisfies(Virtual, V2),
       not version_constraint_satisfies(Virtual, V1, V2).

This requires us to compare every version constraint to every other, both
in program generation and within the concretizer -- so there's a
potentially quadratic evaluation time on virtual constraints because we
don't have a real version to "anchor" things to. We just say that all the
constraints need to agree for the virtual constraint to hold.

We can investigate adding synthetic versions for virtuals in the future,
to speed this up.
2021-01-04 14:51:10 -08:00
Todd Gamblin
49ac3471cf concretizer: consolidate handling of virtuals into spec_clauses 2021-01-04 14:51:10 -08:00
Todd Gamblin
fa411e7c07 concretizer: make _condtion_id_counter an iterator 2021-01-04 14:51:10 -08:00
Todd Gamblin
3cc89726ee concretizer: more detailed section headers in concretize.lp 2021-01-04 14:51:10 -08:00
Massimiliano Culpo
cfd0ff52d1
ci: fix issue with latest sphinx (#20661) 2021-01-04 22:10:49 +01:00
Todd Gamblin
16ce207481
bugfix: infinite loop when building a set from incomplete specs (#20649)
This code in `SpecBuilder.build_specs()` introduced in #20203, can loop
seemingly interminably for very large specs:

```python
set([spec.root for spec in self._specs.values()])
```

It's deceptive, because it seems like there must be an issue with
`spec.root`, but that works fine. It's building the set afterwards that
takes forever, at least on `r-rminer`. Currently if you try running
`spack solve r-rminer`, it loops infinitely and spins up your fan.

The issue (I think) is that the spec is not yet complete when this is
run, and something is going wrong when constructing and comparing so many
values produced by `_cmp_key()`. We can investigate the efficiency of
`_cmp_key()` separately, but for now, the fix is:

```python
roots = [spec.root for spec in self._specs.values()]
roots = dict((id(r), r) for r in roots)
```

We know the specs in `self._specs` are distinct (they just came out of
the solver), so we can just use their `id()` to unique them here. This
gets rid of the infinite loop.
2021-01-04 10:28:16 +01:00
Todd Gamblin
a8ccb8e116 copyrights: update all files with license headers for 2021
- [x] add `concretize.lp`, `spack.yaml`, etc. to licensed files
- [x] update all licensed files to say 2013-2021 using
      `spack license update-copyright-year`
- [x] appease mypy with some additions to package.py that needed
      for oneapi.py
2021-01-02 12:12:00 -08:00
Todd Gamblin
78f39bdfee commands: add spack license update-copyright-year
This adds a new subcommand to `spack license` that automatically updates
the copyright year in files that should have a license header.

- [x] add `spack license update-copyright-year` command
- [x] add test
2021-01-02 12:12:00 -08:00
Adam J. Stewart
0d95fd6d52
extends: add type kwarg (#20045)
* extends: add type kwarg

* Flake8 fix
2020-12-30 11:09:58 -06:00
Massimiliano Culpo
eca1dd8738 concretizer: generate facts for externals
Generate only facts for external specs. Substitute the
use of already grounded rules with non-grounded rules
in concretize.lp
2020-12-29 23:51:20 -08:00
Adam J. Stewart
05f8e08067
PythonPackage: add pypi attribute to infer homepage/url/list_url (#17587) 2020-12-29 09:03:08 +01:00
Massimiliano Culpo
60f4621a73
archspec: fixed a typo in the vendored library (#20584) 2020-12-28 12:09:02 -06:00
Omri Mor
cfbe3aa056
Remove more variables from build environment (#20156)
GCC looks for included files based on several env vars.
Remove C_INCLUDE_PATH, CPLUS_INCLUDE_PATH, and OBJC_INCLUDE_PATH
from the build environment to ensure it's clean and prevent
accidental clobbering.
2020-12-24 16:48:53 -06:00
Greg Becker
6947951aaf
bugfix: do not write empty default dicts/lists in envs (#20526)
Environment yaml files should not have default values written to them.

To accomplish this, we change the validator to not add the default values to yaml. We rely on the code to set defaults for all values (and use defaulting getters like dict.get(key, default)).

Includes regression test.
2020-12-23 20:29:38 -08:00
Massimiliano Culpo
91e86f9d0d concretizer: remove vestigial code and comment 2020-12-23 16:40:47 -08:00
Todd Gamblin
1571d6240b style: ensure that all packages pass spack style -a
- fix trailing whitespace and other issues uncovered by better flake8
  checking.

- fix extra whitespace printed by `spack style` command
2020-12-23 16:17:54 -08:00