George Hartzell
ff031de800
Add old version to bcftools ( #5907 )
...
* bcftools v1.2 and htslib v1.2
* dependency change - only require dependencies for v1.2
2017-10-25 12:20:42 +02:00
Audrey Thoma
9947306c3e
py-xlsxwriter: new package ( #5918 )
2017-10-25 12:19:59 +02:00
George Hartzell
4fb46501af
adding bedtools2 v2.23.0 ( #5911 )
2017-10-25 12:16:10 +02:00
George Hartzell
98c06eae92
Parallel fix sbangs ( #5910 )
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* Added procedure to edit sbangs of the parallel perl scripts.
* Specify the types of perl dependency
Adding ", type=('build', 'run')" to the dependency declaration to clarify when and how perl is required
* flake8 cleanup
2017-10-25 12:15:10 +02:00
Audrey Thoma
3265008ad2
adding perl-moose and dependencies ( #5912 )
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* adding perl-moose and dependencies
* added missing dependency
* fixed flake8 errors
2017-10-25 12:07:20 +02:00
Robert Pavel
9e1341a162
Added Hypre Dependency to mfem+hypre ( #5929 )
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Added missing hypre defendency from mfem's hypre-enabled version
2017-10-25 12:03:50 +02:00
lingnanyuan
acbd6c9f62
r-geneplotter: Create new package. ( #5924 )
2017-10-25 12:01:19 +02:00
lingnanyuan
79b49d44af
r-gridextra: Update version to 2.3 ( #5915 )
2017-10-25 11:50:16 +02:00
Audrey Thoma
f8b90d50de
r-geiger and dependencies ( #5933 )
2017-10-25 11:17:37 +02:00
lingnanyuan
cc51cc0b06
r-rbgl: Create new package. ( #5931 )
2017-10-25 11:17:29 +02:00
Yifan Zhu
f87c426a6c
r-variantannotation: created new package ( #5932 )
2017-10-25 11:17:15 +02:00
lingnanyuan
f1c06dec7c
r-gseabase: Create new package. ( #5930 )
2017-10-25 11:17:00 +02:00
Yifan Zhu
054cc5d361
r-bsgenome: created new package ( #5928 )
2017-10-25 11:16:53 +02:00
Yifan Zhu
6b6d5d20e2
r-lsei: new package ( #5926 )
2017-10-25 11:16:46 +02:00
Yifan Zhu
fc3d484784
r-yarn: created new package ( #5925 )
2017-10-25 11:16:41 +02:00
lingnanyuan
d0a5f73a94
r-formula: Update version to 1.2-2 ( #5923 )
2017-10-25 11:16:34 +02:00
Yifan Zhu
c5447d7818
r-quantro: created new package ( #5922 )
2017-10-25 11:16:20 +02:00
lingnanyuan
05997460f6
r-scales: Update url. ( #5921 )
2017-10-25 11:16:00 +02:00
Yifan Zhu
3216daa905
r-doparallel: added list_url and version 1.0.11 ( #5920 )
2017-10-25 11:15:49 +02:00
lingnanyuan
21799cbe81
r-hmisc: Create new package. ( #5919 )
...
* r-hmisc: Create new package.
* Correct format.
2017-10-25 11:15:40 +02:00
Yifan Zhu
5742ec4fea
r-openssl: changed homepage url to the CRAN package homepage, added list_url and added version 0.9.7 ( #5848 )
2017-10-25 11:12:31 +02:00
Praveen C
5b9de2eaba
Glibc 2.26 does not provide xlocale.h ( #5862 )
2017-10-25 10:39:32 +02:00
Ondřej Čertík
882480fad6
gdbm: pass in proper CPPFLAGS ( #5893 )
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The problem was that the configure script was not using spack's compiler
wrappers. We now pass the proper compiler wrapper using the CC argument
explicitly.
Fixes #5892 .
2017-10-25 07:09:41 +02:00
Abhinav Bhatele
b47ff33f11
Add a new package for AMG and fix build issues in the amg2013 package ( #5909 )
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* amg2013: fix build issues
* amg: add new package
* Update package.py
* amg2013: standardize option name
* amg: standardize option names
2017-10-24 21:06:33 -06:00
Ondřej Čertík
39616a2fe1
hypre: make mpi dependency optional ( #5905 )
2017-10-24 18:53:12 -07:00
Robert Pavel
68f7b7863a
Added Spackage for SW4Lite proxy ( #5917 )
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Added Spackage for C version of SW4Lite proxy. Fortran will follow once
race conditions involving .mod files are resolved
2017-10-24 15:31:05 -06:00
Massimiliano Culpo
8b7d2d0f24
'spack install' can overwrite an existing installation ( #5384 )
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'spack install' can now reinstall a spec even if it has dependents, via
the --overwrite option. This option moves the current installation in a
temporary directory. If the reinstallation is successful the temporary
is removed, otherwise a rollback is performed.
2017-10-24 12:32:30 -07:00
Denis Davydov
31813ef2c7
slepc and petsc version updates ( #5863 )
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slepc: add 3.8.0
petsc: no longer prefer 3.7.7
2017-10-24 10:57:14 -07:00
Yifan Zhu
8c306b7b83
r-minfi: created new package ( #5887 )
2017-10-24 14:07:45 +02:00
健美猫
37ce53c48f
Add a package: thrust. ( #3729 )
2017-10-24 11:39:38 +02:00
Yifan Zhu
1ee60e7c63
r-nlme: added list_url and version 3.1-131 ( #5890 )
2017-10-24 11:30:49 +02:00
Yifan Zhu
2a2203895a
r-genomicalignments: created new package ( #5785 )
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* r-genomicalignments: created new package
* r-genomicalignments: using git repo source instead
2017-10-24 11:30:33 +02:00
Yifan Zhu
a68f9dcc26
r-reshape: created new package ( #5889 )
2017-10-24 11:29:56 +02:00
Yifan Zhu
43d39a6b00
r-data-table: added list_url and version 1.10.4-2 ( #5888 )
2017-10-24 11:29:42 +02:00
Todd Gamblin
3f68cc2ba7
Fix bug in spack flake8 when no files differ from develop ( #5898 )
2017-10-24 11:29:18 +02:00
lingnanyuan
896d4c8d0c
r-mass: Update version to 7.3-47 ( #5885 )
2017-10-24 11:27:04 +02:00
lingnanyuan
cc06112959
r-acepack: Create new package. ( #5884 )
2017-10-24 11:26:37 +02:00
lingnanyuan
b09f0cdbe1
r-latticeextra: Create new package. ( #5883 )
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* r-latticeextra: Create new package.
* r-latticeextra: Update list_url.
2017-10-24 11:26:20 +02:00
lingnanyuan
01215d705f
r-htmltable: Create new package. ( #5882 )
2017-10-24 11:25:58 +02:00
lingnanyuan
8c0b95c398
r-htmlwidgets: Update verion to 0.9 ( #5881 )
2017-10-24 11:25:42 +02:00
lingnanyuan
22e96a10ad
r-checkmate: Create new package. ( #5880 )
2017-10-24 11:25:24 +02:00
Yifan Zhu
17d94a5b51
r-geoquery: created new package ( #5879 )
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* r-geoquery: created new package
* r-geoquery: added versioned dependency on r
2017-10-24 11:25:02 +02:00
lingnanyuan
25d38fe077
r-knitr: Update version to 1.17. ( #5878 )
2017-10-24 11:24:45 +02:00
Yifan Zhu
bba655d6d7
r-httr: added list_url and version 1.3.1 ( #5877 )
2017-10-24 11:24:29 +02:00
lingnanyuan
d4d44f0c63
r-rcpparmadillo: Create new package. ( #5875 )
2017-10-24 11:24:16 +02:00
Yifan Zhu
eeb1edd8e5
r-curl: added list_url and version 3.0 ( #5874 )
2017-10-24 11:23:54 +02:00
lingnanyuan
859b9972d3
r-yaml: Update version to 2.1.14 ( #5856 )
2017-10-24 11:23:38 +02:00
lingnanyuan
ae578069bd
r-formatr: Update version to 1.5 ( #5855 )
2017-10-24 11:23:17 +02:00
lingnanyuan
050b753bb7
r-crayon: Update version to 1.3.4 ( #5854 )
2017-10-24 11:23:00 +02:00
lingnanyuan
764b7a7ad1
r-sourcetools: Create new package. ( #5853 )
2017-10-24 11:22:42 +02:00
