Commit graph

14478 commits

Author SHA1 Message Date
Andrew W Elble
5b44a65881
Fix for being able to 'spack load' packages that have been renamed. (#14348)
* Fix for being able to 'spack load' packages that have been renamed.

* tests: add test for 'spack load' of a installed, but renamed/deleted package
2020-03-06 16:29:01 -08:00
George Hartzell
5965a91880
New package: bat (#15345)
* New package: bat

Add package for bat:

     A cat(1) clone with wings.

* Update copyright date

* Embiggen comment re build env settings

Provide a bit more explanatory text about why setup_build_environment
needs to set LLVM_CONFIG_PATH and LIBCLANG_PATH.

Co-authored-by: George Hartzell <ghartzell@audentestx.com>
2020-03-06 18:12:31 -06:00
Dr. Christian Tacke
ce287bccf8
flatbuffers: Allow building shared libraries (#15375)
Added a shared variant, that switches between shared and
static library building, like with most cmake packages.
2020-03-06 12:16:30 -06:00
iarspider
6412b9e71a
Add extra version of py-widgetsnbextension (#15372) 2020-03-06 11:21:33 -06:00
Robert Blake
cd38e87eef
New package: gengetopt, tool for C command line parsers. (#15367)
* New package: gengetopt, tool for C command line parsers.

* Adding url for `spack version` and `spack checksum`
2020-03-06 10:59:08 -06:00
Massimiliano Culpo
58e57a6986
eigen: updated url to point to gitlab (#15357)
* eigen: updated url to point to gitlab

fixes #13890

Eigen migrated from bitbucket to gitlab

* eigen: simplified package (no dependencies other than stdlib)

* Added TODO list for future improvements
2020-03-06 15:53:24 +01:00
Mark W. Krentel
441340771d
libunwind: remove version 2018.10.12, add stable branch (#15316)
* libunwind: remove version 2018.10.12, add stable branch

Finish cleaning up the libunwind version numbers.  The 2018.10.12
snapshot number didn't fit well with spack's ordering (my bad), and
1.4-rc1 is a near identical replacement.

Add a version for the 1.4-stable branch.

Add a variant for zlib compressed symbol tables (develop branch only).

Adjust packages caliper and hpctoolkit to adapt to the changes.

Add myself as maintainer.

* Flake

* Settle on renaming 'develop' to 'master' (to match the branch name)
and name the 'v1.4-stable' branch as '1.4-head'.  'stable' or
'1.4-stable' is a better name, but '1.4-head' (an infinity version)
sorts better.
2020-03-06 08:49:46 -06:00
Mathias Anselmann
8687ace8f9
Cscope: fix linking and update to v15.9 (#15358)
* explicitly link against libtinfo

* Update to v15.9

* fixed indentation

* fixed url definition

* added url vor current version again

* fixed indentation

* moving url_version to the bottom
2020-03-06 08:47:35 -06:00
Dr. Christian Tacke
83778f009e
munge: new version, local state path, misc (#15307)
* Add version 0.5.14
* Add variant to allow setting the localstatedir: See below
* Add bzip2 dependency
* Add myself to maintainers (I just think, I can care for
  this package)

About localstatedir:

munge has a server and a client.
They communicate via unix domain sockets.
This socket is in PREFIX/var.
This package provides the client, the server, and
development part (headers, libraries).

Let's assume one has the server part installed as a system
package.  This generally is a good idea, so that the server
gets started during boot. This means, that the socket is in
the system's /var.

If one now wants to use the client part (library!) via
spack, one has a problem: spack's munge looks in
SPACK-PACKAGE-PREFIX/var for the socket.

There needs to be a way to let the spack installed package
use the system's socket.

So add a variant to override the path during build:
localstatedir=/var.
2020-03-06 08:03:20 -06:00
iarspider
4391bb5f23
Update pycairo to 1.18.1 and fix dependencies (#15352)
* Update pycairo to 1.18.1 and fix dependencies

* Typo
2020-03-06 08:01:45 -06:00
Axel Huebl
c40915db05
openPMD-api: 0.11.0 (#15371)
Add the latest release of openPMD-api.
2020-03-06 11:20:31 +01:00
Chris Green
da5144793e
Allow overrides for spack.config set() and override(). (#14432)
Allows spack.config InternalConfigScope and Configuration.set() to
handle keys with trailing ':' to indicate replacement vs merge
behavior with respect to lower priority scopes.

Lists may now be replaced rather than merged (this behavior was
previously only available for dictionaries).

This commit adds tests for the new behavior.
2020-03-05 19:25:01 -08:00
Tamara Dahlgren
b2e7e7edaa
Recover coverage from subprocesses during unit tests (#15354)
* Recover coverage from subprocesses during unit tests
2020-03-05 16:54:29 -08:00
Adam J. Stewart
dd8afca9d8
Add Checksum for 1.4.1.4 Release (#15363)
* Add Checksum for 1.4.1.4 Release

Add checksum for 1.4.1.4 release.  Mark myself as maintainer.  List develop version.

* Update var/spack/repos/builtin/packages/libhio/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-05 17:28:42 -06:00
Adam J. Stewart
aa0ab13a73
Python: add 3.8.2 (#15365) 2020-03-05 17:02:13 -06:00
Adam J. Stewart
656d1ac5ab
Update legion versions (#15364) 2020-03-05 16:28:35 -06:00
eugeneswalker
8cce884078
unifyfs: add patch to fix #15292 (#15315)
It was reported that UnifyFS had a bug with the --enable-mpi-mount
config option, which corresponds to the auto-mount variant. This bug
was fixed in the UnifyFS dev branch, however remains broken for the
0.9.0 version.

This adds a patch to the unifyfs package to fix the auto-mount
variant when installing with version 0.9.0.

This also removes the openssl dependency as unifyfs does not directly
depend on it. This was said to be a non-explicit dependency in #15258.
However, if it is needed, it is likely a non-explicit dependency of
one of unifyfs's dependencies and should be added there.

Fixes: #15292
2020-03-05 13:54:25 -08:00
Adam J. Stewart
da853a5daa
lammps: add most recent stable release (#15335)
* lammps: add most recent stable release

* Update var/spack/repos/builtin/packages/lammps/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-05 15:19:18 -06:00
Patrick Gartung
820d147e08
Allow buildcaches keys to find public keys on the e4s mirror (#15361) 2020-03-05 15:15:40 -06:00
Adam J. Stewart
28a75a4c35
lastz: declare ch as type int (#15350) 2020-03-05 15:06:20 -06:00
Adam J. Stewart
fde1b2088a
update maintainers for bmi, darshan, and margo (#15356)
Signed-off-by: Phil Carns <carns@mcs.anl.gov>
2020-03-05 15:00:52 -06:00
Axel Huebl
24e6155bac
New package: fd-find (#15344)
* New package: fd-find

Add package for fd-find:

    A simple, fast and user-friendly alternative to 'find'.

* Update copyright date
2020-03-05 10:14:40 -08:00
Axel Huebl
3a8800b6b4
New package: ripgrep (#15343)
Add package for ripgrep:

    ripgrep is a line-oriented search tool that recursively searches
    your current directory for a regex pattern.  ripgrep is similar to
    other popular search tools like The Silver Searcher, ack and grep.
2020-03-05 10:14:18 -08:00
Adam J. Stewart
9940392c2b
New package: opensubdiv (#15310)
* [opensubdiv] created stub for opensubdiv

* [opensubdiv] added homepage and description

* [opensubdiv] removed boilerplate

* [opensubdiv] working on dependencies and variants

* [opensubdiv] fixed syntax error

* [opensubdiv] defined spec

* [opensubdiv] added dev version

* [opensubdiv] building on CudaPackage

* [opensubdiv] always build with open gl and depends_on('gl')

* [opensubdiv] applying cuda flags

* [opensubdiv] worked on doc variant

* [opensubdiv] added some x11 libraries

* [opensubdiv] depends on glfw

* [opensubdiv] locating glew

* [opensubdiv] added openmp variant

* [opensubdiv] flake8 fixing

* [opensubdiv] fixed develop version name

* [opensubdiv] fixed description to not need @
2020-03-05 10:52:20 -06:00
Massimiliano Culpo
752092f46a
Correct pytest.raises matches to match (#15346) 2020-03-05 11:16:02 +01:00
Massimiliano Culpo
d9626cca50
Bugfix: resolve StopIteration message attribute failure (#15341)
Testing the install StopIteration exception resulted in an attribute error:

AttributeError: 'StopIteration' object has no attribute 'message'

This PR adds a unit test and resolves that error.
2020-03-05 10:26:50 +01:00
Adam J. Stewart
9edf812745
py-matplotlib: add 3.2.0 (#15349) 2020-03-04 21:56:00 -06:00
Peter Scheibel
c5dc4a722e
xgboost: add version 0.90 (#15321) 2020-03-04 18:19:03 -08:00
Axel Huebl
1757ec9eae
New version of simplejson (#15325) 2020-03-04 20:34:06 -05:00
Adam J. Stewart
b813887585
ADIOS2: Cleanup, Development Branch Name (#15334)
* ADIOS2: Version `master`

Rename branch version to supported, real development branch `master`.
The old name is legacy Spack when alternative development branch
names were not yet supported.

* ADIOS: Simplify via spec Variable

use the already defined local variable `spec` to shorten
lines
2020-03-04 19:24:16 -06:00
Adam J. Stewart
136a4897b7
ADIOS2: Testing Depends on Python (#15336)
Add the python dependency and CMake hints when build with tests.
`spack install --tests=root adios2`
2020-03-04 19:23:12 -06:00
Patrick Gartung
e2b3d52999
Add function replace_prefix_nullterm for use on mach-o rpaths. (#15347)
This recovers the old behavior of replace_prefix_bin that was
modified to work with elf binaries by prefixing os.sep to new prefix
until length is the same as old prefix.
2020-03-04 19:21:15 -06:00
Adam J. Stewart
d7f84c738e
Fixed the sha has for 1.3.3. (#15331) 2020-03-04 19:19:16 -06:00
Adam J. Stewart
1973d1c53e
libfabric: default 1.8.1 (#15337)
Since 1.9.0 is broken for Darwin, which impacts many developers, and
the fix is still a RC, let's keep the previous release as default.

This avoids distruption for OSX developers and CI.
2020-03-04 19:11:54 -06:00
Peter Scheibel
cf7dbbf65c
Remove DB conversion of old index.yaml (#15298)
Removed the code that was converting the old index.yaml format into
index.json. Since the change happened in #2189 it should be
considered safe to drop this (untested) code.
2020-03-04 16:39:10 -08:00
Patrick Gartung
3ea0e91533
use os.sep instead of null byte to pad replacement paths in binaries (#15338)
* use os.sep instead of null byte to pad replacement paths in binaries

* Prefix the pading os.sep's
2020-03-04 17:15:09 -06:00
Adam J. Stewart
8eda1db50f
precice: Add version 2.0.1 (#15318) 2020-03-04 13:19:41 -06:00
Adam J. Stewart
60439a5040
pgi-19.10 update version (#15330) 2020-03-04 13:18:46 -06:00
Adam J. Stewart
3be3b2d0e3
gcc: Add 8.4.0 (#15323) 2020-03-04 13:18:02 -06:00
Adam J. Stewart
1ade506f54
Add extra version of py-contextlib2 (#15322) 2020-03-04 13:17:09 -06:00
Adam J. Stewart
5cfd862f47
suite-sparse: fix installation for v5.X (#15326)
fixes #15184

GraphBLAS depends on m4 according to CMake error message
Do not use INSTALL= when compiling the library
2020-03-04 13:16:42 -06:00
Christoph Junghans
32a0f3274f
ecp-proxy-apps: version bump (#14680) 2020-03-04 10:45:23 -07:00
Sergey Kosukhin
b472c13803
Fix FCFLAGS handling for Autotools packages (#14788)
Spack's fflags are meant for both f77 and fc. Therefore, they must
be passed as FFLAGS and FCFLAGS to the configure scripts of
Autotools-based packages.
2020-03-03 13:13:38 -08:00
sknigh
370e7c211d
intel-xed does not support python>3.7 (#15308) 2020-03-03 13:38:55 -06:00
sknigh
cec341594d
Added UQTk package (#14801)
* added UQTk package

* Add missing expat dependency to uqtk
2020-03-03 12:50:20 -06:00
Mark W. Krentel
fddb3f291c
elfutils: increase connect timeout (#15262)
Increase the connect timeout for elfutils to 60 sec.  Elfutils (and
bzip2) tar files are on sourceware.org which is often slow to respond.
2020-03-03 11:27:57 -06:00
Brian Van Essen
f83d98a62d
Protobuf's cmake environment does not properly handle being exported (#15293)
and found when using the RelWithDebInfo build type.  Change protobuf
to only support Release and Debug build types.
2020-03-03 11:27:01 -06:00
Mathias Anselmann
d6b0cf75ed
cherry-picking global ordinal type variant from https://github.com/spack/spack/pull/14215 and setting dealii to GO int, to make it compile again (#15288)
Co-authored-by: Andrey Prokopenko <andrey.prok@gmail.com>
2020-03-03 11:26:20 -06:00
Dr. Christian Tacke
c4237e4a10
fairlogger: add version, other improvements (#15300)
* @develop needs the full git repo to use "git describe"
  properly

* If not specifying the cxxstd variant, let cmake use its
  default

* Improve fmt dependencies: fairlogger < 1.6.2 does not
  work with fmt >= 6.

* Small other stuff
2020-03-03 11:24:37 -06:00
Patrick Schratz
71855707ef
Update package.py (#15299) 2020-03-03 11:02:02 -06:00