Commit graph

2157 commits

Author SHA1 Message Date
Adam J. Stewart
f34c5367d5 Better tabulation for spack checksum (#2673) 2016-12-25 19:25:53 -08:00
Denis Davydov
91bfebbed8 filter_system_path: additionally filter system prefixes (#2672)
That's because in set_build_environment_variables()
the funciton filter_system_paths() is actually applied to
package prefixes, and not to prefix/lib or prefix/include.
2016-12-25 19:24:56 -08:00
Todd Gamblin
c4afaabea9 Add argument to spack spec to show deptypes. (#2680)
- `-t` | `--types` argument now shows deptypes in `spack spec`
2016-12-25 14:15:58 -08:00
Adam J. Stewart
7e8767e3fd Remove usernames from paths in docs (#2675)
* Remove usernames from paths in docs

* Fix path export
2016-12-25 12:36:35 -08:00
Adam J. Stewart
c3cd948537 Modify github archive regex to support luaposix (#2677) 2016-12-25 12:32:19 -08:00
scheibelp
3f1cdbf5ef Revert #2292: use frontend compiler for build deps (#2549)
The primary goal of #2292 was to use the frontend compiler to make
build dependencies like cmake on HPC platforms. It turns out that
while this works in some cases, it did not handle cases where a
package was a link dependency of the root and of a build dependency
(and could produce incorrect concretizations which would not build).
2016-12-20 00:21:25 -08:00
Todd Gamblin
c89de04f40 Support Yorick versions (#2640) 2016-12-19 14:55:23 -08:00
Todd Gamblin
4b7b6768e6 Modify github regex to support NCO. (#2633) 2016-12-19 14:17:18 -08:00
Todd Gamblin
a2b4146e10 Fixes for various hash issues (#2626)
* Better output for disambiguate_specs()

* Fix wrong exception name.

* Fix satsifies(): concrete specs require matching by hash.

- Fixes uninstall by hash and other places where we need to match a
  specific spec.

- Fix an error in provider_index (satisfies() call was backwards)

- Fix an error in satisfies_dependencies(): checks were too shallow.

* Fix default args in Spec.tree()

* Move installed_dependents() to DB to avoid unknown package error.

* Make `spack find` and `sapck.store.db.query()` faster for hashes.

* Add a test to ensure satisfies() respects concrete Specs' hashes.
2016-12-19 09:09:53 -08:00
Alfredo Adolfo Gimenez
68e9a2ed8d Added customization for make targets in 'build' and 'install' phases for AutotoolsPackage (#2464)
* Customization for make targets in build and test phases for AutotoolsPackage

* Updated Blitz++ to use customized make build and test targets

* Removed flake8 error

* Removed make test customization, added make install customization, need to figure out issues with multiple make targets

* Changed build_targets and install_targets to normal attributes
2016-12-18 16:27:47 -08:00
Massimiliano Culpo
87c9b01033 openblas: derives from MakefilePackage (#2488)
* MakefilePackage: changed build_args and install_args for consistency with #2464
openblas: derives from MakefilePackage

* MakefilePackage: changed default edit behavior
2016-12-15 10:15:52 -08:00
Mario Melara
32cecf55ee Fix target for compiler on CNL operating systems (#2580)
Changes any to a string to avoid <built-in function any> being
incorrectly added to target in compilers.yaml.
2016-12-14 14:37:14 -08:00
Adam J. Stewart
1ac4ae0b41 Make unzip quiet (#2593) 2016-12-14 14:24:02 -08:00
Mario Melara
01230a62d4 Change attribute to match ArchSpec refactor (#2579)
Fixes issue #2578
2016-12-13 13:58:03 -08:00
Ben Morgan
fb809189d3 Better cxx11/14/17 flags for GNU/Clang/Intel (#2539)
* Better cxx11/14 flags for GNU/Clang/Intel

- GCC 4.8 only supports -std=c++1y for C++14
- Use CMake's rules for AppleClang to set cxx11 and cxx14 flags based on
  Apple Xcode/LLVM version
- Use CMake's rules for Intel to add support for cxx14 flags based on
  Intel version.

* Add cxx17_flag property

Implement property in compiler for c++17 as per those for c++11/14.
Add concrete support for GNU/Clang:

- Return -std=c++1z for GCC 5 and above per GCC documentation
- Return -std=c++1z for Clang 3.5 and above per Clang documentation
- Return -std=c++1z for Apple LLVM 6.1 and above per CMake's rules
2016-12-13 13:15:10 -08:00
Elizabeth Fischer
4f9e548bf6 Update spack setup and spack graph to be consistent with recent refactoring (#2317)
* Update `spack setup` and `spack graph` to be consistent with c557e765 and 9347f869.  Fixes #2316.

* Added another "fix" necessary to make `spack setup` work.

* Added another "fix" necessary to make `spack setup` work. (reverted from commit 7f0d3ecb38c97ec00491d7cd66b4266e3018b1ca)
2016-12-13 10:48:40 -08:00
Todd Gamblin
8496d8ff77 Add a test to ensure package names have the right case. (#2562) 2016-12-13 01:23:40 -08:00
Adam J. Stewart
9f71382912 Add missing bzip2 dependency to freetype (#2536)
* Add freetype dependency on bzip2

* Switch package with an install method for the docs
2016-12-12 14:20:36 -08:00
Sergey Kosukhin
8f28c9009e Set parent process's input stream inside the build process. (#2535) 2016-12-12 11:55:13 -08:00
Todd Gamblin
d3d87ea190 Add documentation for repositories and namespaces. (#2474)
* Add documentation for repositories and namespaces.

* Update and extend repository documentation per review.

- Also add `-N` argument for `spack spec`
2016-12-12 00:54:20 -08:00
Stephen McDowell
7e96b09e63 [docs] missin .. code-block:: console in Spack 101 (#2530)
The advanced [Uninstalling Packages](spack.readthedocs.io/en/latest/tutorial_sc16_spack_basics.html#uninstalling-packages) via hash has a couple missing `.. code-block:: console` directives ;)

I have no idea what branch to direct this to though...
2016-12-11 11:40:36 -08:00
Denis Davydov
1570f90fde clang: do xcode mockup iff requested by a package (#2544)
* clang: do xcode mockup iff requested by a package

* add a note

* add pkg to setup_custom_environment() and decide whether or not to use mockup XCode there based on the package
2016-12-10 16:23:39 -08:00
becker33
3f8613ae42 Make targets an attribute of compilers (#2500)
* Make targets an attribute of compilers, similar to OS. Allows users to use `spack compiler find` to add compilers for the same platform/os but different targets when spack is installed on a file system mounted on machines with different targets.

* Changed get_compilers() method to treat old compilers with no target as target='any'

* flake8 changes

* Address change requests for comments/code clarity
2016-12-08 22:40:26 -08:00
Sergey Kosukhin
10591fb87f Json loader now returns str objects instead of unicode. (#2524) 2016-12-08 13:42:18 -08:00
scheibelp
065e3d7c0d Revert to-string for CNL operating system (#2526) 2016-12-08 11:41:34 -08:00
Todd Gamblin
be300eb6d5 Add support for parsing R-XML URL versions. (#2525)
* Add support for parsing R-XML URL versions.

* Better url-parse debug output.

- just print the debug stuff all the time.

* fix R-XML versions.
2016-12-08 11:08:58 -08:00
Pramod Kumbhar
29e42143e0 fix for bluegene-q platform (#1980)
* fix for  bluegene-q platform

* change powerpc to ppc64

* change CNK to cnk
2016-12-08 01:01:02 -08:00
scheibelp
83c9f7a4f2 Fix deptypes for deps specified on command line (#2307)
Fixes #2306

Any dependency explicitly mentioned in a spec string ended up with the
build and link deptypes unconditionally. This fixes dependency
resolution to ensure that packages which are mentioned in the spec
string have their deptypes determined by the dependency information
in the package.py files. For example if a package has cmake as a build
dependency, and cmake is mentioned as a dependency in the spec string
for the package, then it ends up with just the build deptype.
2016-12-08 00:54:30 -08:00
scheibelp
30daf95ae8 Use frontend OS for build/run deps by default (#2292)
Packages built targeting a backend may depend on packages like cmake
which can be built against the frontend. With this commit, any build
dependency or child of a build dependency will target the frontend by
default. In compiler concretization when packages copy compilers from
nearby packages, build dependencies use compiler information from
other build dependencies, and link dependencies avoid using compiler
information from build dependencies.
2016-12-08 00:51:19 -08:00
Oliver Breitwieser
55059a53a3 Fixed spelling of variable (#2516) 2016-12-07 13:08:51 -08:00
Todd Gamblin
41b8f31bcd Use JSON for the database instead of YAML. (#2189)
* Use JSON for the database instead of YAML.

- JSON is much faster than YAML *and* can preserve ordered keys.
  - 170x+ faster than Python YAML when using unordered dicts
  - 55x faster than Python YAML (both using OrderedDicts)
  - 8x faster than C YAML (with OrderedDicts)

- JSON is built into Python, unlike C YAML, so doesn't add a dependency.
- Don't need human readability for the package database.
- JSON requires no major changes to the code -- same object model as YAML.
- add to_json, from_json methods to spec.

* Add tests to ensure JSON and YAML don't need to be ordered in DB.

* Write index.json first time it's not found instead of requiring reindex.

* flake8 bug.
2016-12-05 10:03:58 -08:00
Adam J. Stewart
161d6205b2 Allow spack create to handle packages with period in name (#2351)
* Allow spack create to handle packages with period in name

* Update tests to handle new package name detection scheme
2016-12-05 09:34:14 -08:00
Todd Gamblin
b8b14c84e0 Bugfix: restore __contains__ method after ArchSpec refactor. (#2481) 2016-12-04 16:22:16 -08:00
Joseph Ciurej
552b4eae9e Fixes to Handling Multiple Architectures (#2261)
* Added some notes about how multiarch detection could be fixed.

* Implemented a preliminary version of the "spack.spec.ArchSpec" class.

* Updated the "spack.spec.Spec" class to use "ArchSpec" instead of "Arch".

* Fixed a number of small bugs in the "spack.spec.ArchSpec" class.

* Fixed the 'Concretizer.concretize_architecture' method so that it uses the new architecture specs.

* Updated the package class to properly use arch specs.
Removed a number of unused architecture functions.

* Fixed up a number of bugs that were causing the regression tests to fail.
Added a couple of additional regression tests related to architecture parsing/specification.
Fixed a few bugs with setting reserved os/target values on "ArchSpec" objects.
Removed a number of unnecessary functions in the "spack.architecture" and "spack.concretize" modules.

* Fixed a few bugs with reading architecture information from specs.
Updated the tests to use a uniform architecture to improve reliability.
Fixed a few minor style issues.

* Adapted the compiler component of Spack to use arch specs.

* Implemented more test cases for the extended architecture spec features.
Improved error detection for multiple arch components in a spec.

* Fix for backwards compatibility with v0.8 and prior

* Changed os to unknown for compatibility specs

* Use `spack09` instead of `spackcompat` for the platform of old specs.
2016-12-03 15:38:31 -08:00
Matt Belhorn
e26a0be731 Does nothing if no prexisting config.guess is found. (#2446)
* Does nothing if no prexisting config.guess is found.

* Update name for RHEL OS.
2016-12-01 11:54:48 -06:00
TomasPuverle
f1fe614d67 Update tutorial_sc16_packaging.rst (#2450)
Fixed a typo.
2016-12-01 11:53:18 -06:00
TomasPuverle
a961797155 Update workflows.rst (#2451)
Fixed a typo.
2016-12-01 11:53:03 -06:00
Sergey Kosukhin
051720defd More informative help messages for spack config. (#2453) 2016-12-01 11:52:56 -06:00
hegner
c3e34b480a CDash fixes (#2438)
use short spec instead of spec as CDash has a limitation in name length
mark all problems as 'FAILED' as CDash does not understand "ERRORED" status
2016-11-29 13:30:59 -06:00
hegner
a6d579ea15 add headers neede for CDASH to junit output (#2433) 2016-11-29 08:29:57 -06:00
Andrey Prokopenko
11bfccd53f Adding pic_flag property to compilers (#2375)
Different compilers have different flags for PIC (position-independent
code). This patch provides a common ground to accessing it inside specs.

See discussions in #508 and #2373. This patch does not address the issue
of mixed compilers as mentioned in #508.
2016-11-24 12:25:22 -08:00
scheibelp
261d36e801 Add dynamic search option for package sources (#2270)
Package provides a 'list_url' attribute which may be searched to find
download links. #1822 created a slowdown for all tests by always
searching this URL. This reenables dynamic search only in cases where
all other fetchers fail. This also only enables dynamic search when
'mirror_only' is set to false.
2016-11-24 12:21:05 -08:00
Adam J. Stewart
e60bccd95c Fix indentation for newly created packages (#2391) 2016-11-23 10:58:13 -08:00
Adam J. Stewart
f351e4402c Update external distro package to 1.0.1 (#2381) 2016-11-22 14:01:01 -08:00
Todd Gamblin
1901b05b9c Forgot http:// in tutorial link. 2016-11-22 01:24:48 -08:00
Todd Gamblin
c394046971 Fix broken doc links. 2016-11-22 00:55:04 -08:00
Matthew Krafczyk
f1b26cb72e Improve stacktrace printing
Sometimes files in the stacktrace are not from spack. Remove these
files before finding the spack root.
2016-11-17 12:51:41 -05:00
Matthew Krafczyk
de7171db8a Use better scheme for getting root directory 2016-11-16 12:14:25 -05:00
Matthew Krafczyk
6c854246aa Fix some formatting errors caught by flake8. 2016-11-16 11:58:36 -05:00
Matthew Krafczyk
8e6d890a19 -s now includes the file and line number with info
The option -s now causes file and line number information to be printed
along with any invocation of msg, info, etc...

This will greatly ease debugging.
2016-11-16 11:58:36 -05:00