Commit graph

15415 commits

Author SHA1 Message Date
Adam J. Stewart
cb258daf88
Add new r-graphlayouts package (#14046) 2019-12-08 09:06:04 -06:00
Adam J. Stewart
4593b7b693
Add new r-tidygraph package (#14045) 2019-12-08 09:05:46 -06:00
Adam J. Stewart
3547776921
py-torch: comment out non-existing deps (#14044) 2019-12-08 09:05:21 -06:00
Adam J. Stewart
aca67581e8
Add new py-requests-mock package (#14043) 2019-12-08 09:05:04 -06:00
Adam J. Stewart
99d2bcf64e
py-luigi: fix test dependencies (#14042) 2019-12-08 09:04:45 -06:00
Christoph Junghans
16a61d1422 elpa: port to microarch (#13655)
* elpa: port to microarch

* flake8

* Update package.py

* Update var/spack/repos/builtin/packages/elpa/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-08 09:03:59 -06:00
Adam J. Stewart
4e24c4ca5f
Add new py-pytest-mypy package (#14041) 2019-12-08 00:10:46 -06:00
Adam J. Stewart
4fb03f7222
Add new py-sphinxcontrib-issuetracker package (#14040) 2019-12-08 00:10:32 -06:00
Adam J. Stewart
8d21e39f00
py-python-htmlgen -> py-htmlgen (#14039) 2019-12-08 00:10:17 -06:00
Adam J. Stewart
fdc3176920
Add new py-asserts package (#14038) 2019-12-08 00:10:02 -06:00
Adam J. Stewart
4f7c28e9cd
py-brian2: py-nosetests -> py-nose (#14037) 2019-12-07 23:21:27 -06:00
Adam J. Stewart
ab250a2e3a
polymake: fix dependency name (#14034) 2019-12-07 22:14:48 -06:00
Adam J. Stewart
0a1d2a45f4
Add py-jupyter package (#14035) 2019-12-07 22:14:34 -06:00
Adam J. Stewart
db1026cb62
Add new py-wxmplot package (#14036) 2019-12-07 22:14:20 -06:00
Adam J. Stewart
891ccbea3f
Add new py-stestr package (#14029) 2019-12-07 15:40:08 -06:00
Adam J. Stewart
c1826d9d32
Add new py-testrepository package (#14030) 2019-12-07 15:39:53 -06:00
Adam J. Stewart
129e548ac0
Add new py-testresources package (#14031) 2019-12-07 15:39:38 -06:00
Adam J. Stewart
71ec2db3a9
Add new py-testscenarios package (#14032) 2019-12-07 15:39:24 -06:00
Adam J. Stewart
e77a557ca1
Add new py-testtools package (#14033) 2019-12-07 15:39:11 -06:00
Adam J. Stewart
cec03c2db4
Add new py-python-subunit package (#14028) 2019-12-07 15:38:56 -06:00
Quinn
1a662f428e Add New package feh and supporting packages (#14013)
* Adding libid3tag package for supporting feh

* Adding libexif package for supporting feh

* Adding imlib2 package for supporting feh

* Adding the feh package

* Rewording the cleanup function for libid3tag

* Fixing some flake8 issues for imlib2 and libid3tag

* Adding sources for the patches and swapping rm for os.remove

* Flake8 fixes

* swapping md5sums for sha256sums
2019-12-07 15:38:41 -06:00
Adam J. Stewart
a9f6caf863
Add new py-hacking package (#14027) 2019-12-07 14:04:06 -06:00
Adam J. Stewart
c88b95bd28
Add new py-fixtures package (#14026) 2019-12-07 14:03:41 -06:00
Adam J. Stewart
e78865b3ab
Add new py-extras package (#14025) 2019-12-07 14:03:06 -06:00
Adam J. Stewart
b6a6f28482
Add py-tox package (#14024) 2019-12-07 14:02:39 -06:00
Adam J. Stewart
9ece63242a
Add latest version of py-importlib-metadata (#14023) 2019-12-07 14:02:16 -06:00
Adam J. Stewart
31b45d40d9
flann: fix missing dependencies (#14022) 2019-12-07 14:01:39 -06:00
Christoph Junghans
969bc948b5 votca*: add v1.6_rc1 (#14017)
* votca*: add v1.6_rc1

* votca: prefer v1.5.1
2019-12-07 10:04:15 -06:00
Axel Huebl
15bb5da99f openPMD-api: 0.10.1 (#14018)
Add the latest release of openPMD-api.
2019-12-07 10:02:53 -06:00
Axel Huebl
d705e96a63
Spec Header Dirs: Only first include/ (#13991)
* CUDA HeaderList: Unit Test

* Spec Header Dirs: Only first include/

Avoid matching recurringly nested include paths that usually
refer to internally shipped libraries in packages.
Example in CUDA Toolkit, shipping a libc++ fork internally
with libcu++ since 10.2.89:
`<prefix>/include/cuda/some/more/details/include/` or
`<prefix>/include/cuda/std/detail/libcxx/include`

regex: non-greedy first match of include

Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* CUDA: Re-Enable 10.2.89 as Default
2019-12-06 23:47:03 -08:00
Mark W. Krentel
9d9737f765 ibm-java: add version 8.0.6.0 (#14003)
* ibm-java: add version 8.0.6.0

Add version 8.0.6.0 and remove 8.0.5.30.  IBM is fairly aggressive
about removing old versions, and 8.0.5.30 is no longer available from
their download site.

* Restore version 8.0.5.30, although it is no longer available for
download from IBM.
2019-12-06 18:11:24 -06:00
Francesco Di Natale
01d35a4f3b Packages/py-maestrowf (#14010)
* Addition of repository branches to maestrowf.

* Addition of 1.1.5dev pre-release.

* Correction of a merge conflict.

* Addition of Maestro release 1.1.5

* Addition of Maestro release 1.1.6 (removal of 1.1.5)

* Sets 1.1.6 to the preferred version.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Tweak to the url to point to latest.
2019-12-06 18:10:58 -06:00
Adam J. Stewart
66a169e2a5
Add py-parameterized package (#14016) 2019-12-06 18:09:00 -06:00
Adam J. Stewart
350a5422ed
Update py-theano dependencies (#14015) 2019-12-06 18:08:34 -06:00
nicolas le goff
d173ec6a35 mesquite: fix build of the no mpi variant. (#14012)
* mesquite: fix build of the no mpi variant.

* mesquite: added the --without-mpi option to configure.
2019-12-06 18:08:13 -06:00
Tamara Dahlgren
842e9d9375 docs: Alphabetize create cmd template options (#13993)
* Bugfix: Display template options for create command.

* Alphabetize "spack create" template options for readability

* Revert template choices format; alphabetize list

* flake8 fix
2019-12-06 18:07:45 -06:00
Greg Becker
99c9365974 Bugfix: spack find -p fails in environment (#13972)
* force spack find -p to print abstract specs without prefixes
* hashes have the same issue; improve handling of find -L to match find -l
2019-12-06 12:29:57 -08:00
Teodor Nikolov
65a292fbbf [Package: HPX] Fix Apex and OTF2 support (#13982)
* Fix Apex and OTF2 support

- Comment out apex as a dependncy: it is bundled with HPX.
- Apply a patch to v1.3.0 to correctly build with APEX.
- Add otf2 as a dependency when APEX is enabled.

* Remove depends_on('apex')
2019-12-06 12:41:55 -06:00
t-karatsu
06042ec7ec augustus: Set compile commands for each compiler and Fix for using 'boost' on Spack (#13975)
* augustus: Set compile commands for each compiler and Fix for using 'boost' on Spack

* fix for flake8

* delete 'string' args

* Fix args of filter_file func

* Fix args of other filter_file func
2019-12-06 12:39:23 -06:00
Galen Shipman
5d523dd689 Add patch to fix issue building current llvm develop master on power9 (#13986)
* Add patch to fix issue building current llvm develop master on power9

* Conform to proper block commenting

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-06 12:38:58 -06:00
Tamara Dahlgren
dd26cc4004 Fastmath: Added required version (#13990)
* Fastmath: Added required version

* Changed the version to 'latest' (per balay).
2019-12-06 12:38:29 -06:00
Tamara Dahlgren
5e49b76dd7 Ceed: Added required version (#14006) 2019-12-06 12:38:00 -06:00
t-karatsu
246799d4ce sz: Change optimization flags for Fujitsu compiler (#14007) 2019-12-06 12:05:16 -06:00
Paul
67e45096c8 Specify self for internal setup method (#14008) 2019-12-06 12:04:57 -06:00
Brian Homerding
5e20bd86e4 Convert llvm Spackage to use the monorepo (#11392)
* [WIP] Convert llvm spackage to use the monorepo

* Correcting python dependencies

* Adding develop version for llvm monorepo

* Python 2.6 Fix

* Build Flang fork in a different root_cmakelists_dir

* Formatting Fix

* Including flang package changes

* Removing explicit llvm dependencies variants

* flake8 fix

* Updating patches and llvm+flang logic

* Updating env setup API

* Add top level git

* Conflicting flang variant with other variants
2019-12-06 12:01:30 -06:00
Seth R. Johnson
f069a3feda Add h5sh python package (#14001)
* Add h5sh package

* Fix requirements and update version
2019-12-06 11:58:59 -06:00
Tamara Dahlgren
b0f59484d3 docs: Minimal BundlePackage build system doc (#13992)
* Minimal BundlePackage build system doc

* Add link to new bundlepackage file

* Fixed link bug and added create command example
2019-12-06 07:26:59 -08:00
Mark W. Krentel
f84ad57fe7 hpcviewer: add version 2019.09 (#14004)
Add version 2019.09.  Adjust the iteration through versions to
eliminate the need for version_list.
2019-12-05 18:59:30 -06:00
Dominik Dold
c3eafde7bf Add new TensorFlow package (#13112)
* add tensorflow

Change-Id: Id778c68d148cc42f0b478a9d10a8f937cb54cdc6

* make bazel and tensorflow build

Change-Id: Iae9005e8f4dcc8f1ed36ea9337d2430aeebb291f

* fix flake8

Change-Id: Ib05529dd796eab4a8855a5d7775cc4efea8e479d

* 2nd flake8 attempt

Change-Id: I46224be3a374b2a65793048b0c5178ea64adbd78

* replace md5 sums with sha256

* add version 1.13.2

* bazel() -> bazel('build',...

* specify versions of bazel dependency

* build with CUDA

* add TODOs

* add more todo"s

* improve enum34 dependency

* py-future is a dependency as of v1.14

* Update var/spack/repos/builtin/packages/tensorflow/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/tensorflow/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/tensorflow/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/tensorflow/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* enable nccl, cuda by default

* explain patches

* add todo

* remove unnecessary copt_flag

* use join

* join argument must be an iterable

* split long line; use same opts for non-cuda build

* without opt flags, configure hangs

* introduce build phases; re-arrange

* undo mistake

* restore unset tmp_path

* as of v1.14, nccl_install_path is parsed correctly, hence change ...prefix.lib to ...prefix

* now, version 1.14 compiles successfully with cuda

* add version 2.1.0

* specify bazel dependency for version 2.1.0-rc0

* account for deprecated bazel opts for v2.1.0-rc0

* disable mkldnn contraction kernel

* Flake8 fixes

* md5 -> sha256

* Fix TF and TF-estimator version deps

* Don't just comment out patch

* Add myself as a maintainer

* Patch py-astor to support newer py-setuptools

* Add more versions and bazel version constraints

* Add a build phase

* Add note about configure interactivity

* dev-build -> build-env

* Disable iOS build

* Use correct optimization flags

* Add variants for all possible features

* nccl isn't always a dependency

* Specify correct dependency versions for each release

* Libs may not be in lib or lib64

* Add py-opt-einsum package

* Add newer version of py-protobuf

* Add newer version of py-wrapt

* Fix Python 2.6 syntax error

* Code review

* Set more env vars for older versions

* Add more env vars, fix bazel versions, add conflicts

* Fix config options

* Specify version that support --config args

* Add py-future dependency for Python 2

* Fix cuda config flag and compute capabilities

* Fix installation on macOS, add unit tests

* Override cuda variant default to True on non-macOS

* Rename tensorflow to py-tensorflow

* Has to extend something

* Fix os.symlink call

* convert cuda_arc values to capabilities

* restore nccl prefix path for v1.13.1

* Revert to v2

* Remove extraneous period

* Add new version of jdk/openjdk

* More stable cuda_arch formatting

* Fix bazel unit tests

* Fix symlinking

* Fix unit tests

* +gcp by default until build error figured out
2019-12-05 18:48:20 -06:00
Scott Wittenburg
a288449f0b cdash: fix reporting issue with python 3 2019-12-05 11:37:03 -07:00