Commit graph

15285 commits

Author SHA1 Message Date
Andrew W Elble
654914d53e Fix for being able to 'spack load' packages that have been renamed. (#14348)
* Fix for being able to 'spack load' packages that have been renamed.

* tests: add test for 'spack load' of a installed, but renamed/deleted package
2020-03-20 11:21:40 -07:00
Michael Kuhn
3753424a87 modules: store configure args during build (#11084)
This change stores packages' configure arguments during build and makes
use of them while refreshing module files. This fixes problems such as in
#10716.
2020-03-20 11:16:39 -07:00
Greg Becker
32a3d59bfa fetch_strategy: remove vestigial code (#15431) 2020-03-20 11:14:37 -07:00
Adam J. Stewart
6f3983b1c7
py-dgl: add new package (#15594) 2020-03-20 12:42:24 -05:00
Benjamin Fovet
e66a7530a1
Add NLopt version 2.6.1 (#15595) 2020-03-20 12:42:01 -05:00
Kevin Manalo
3b70c932aa
papi: add version 6.0.0 (#15590) 2020-03-20 10:08:54 -07:00
Dr. Christian Tacke
cf45d38d24
root: Add version 6.20.{00,02} (#15487)
* Add version 6.20.{00,02}, don't yet mark it preferred
* It needs zstd
* It needs numpy (at least for 6.20.00:6.20.03)
* Reorder python dependencies a bit

* Add mlp variant, default False
  Older versions always include mlp, so no conflicts there.
* Disable tmva, because it needs mlp
* tmva needs mlp, so add conflict
2020-03-20 16:55:48 +00:00
Dr. Christian Tacke
03945c2541
Show the packaga name for a missing patch sha256 (#15441)
When a patches sha256 is missing, also show the
packagename, so that analyzing is easier.
2020-03-20 11:39:04 -05:00
Matthieu Dorier
d14a6e6bc7
Added two new versions of spdlog (#15586) 2020-03-20 09:19:06 -05:00
darmac
5f63fc5316
add new package: glusterfs (#15565)
* add new package: glusterfs

* fix list_depth for url

* remove list_depth

* add list_url for glusterfs
2020-03-20 09:18:24 -05:00
darmac
6cccce4932
add new package lksctp-tools (#15564)
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-03-20 10:11:12 +01:00
Adam J. Stewart
03a88a2d3f
py-decorator: added v4.4.2 (#15581) 2020-03-20 10:10:19 +01:00
Adam J. Stewart
b4f1f42e4f
py-networkx: add 2.4 (#15582) 2020-03-20 10:09:48 +01:00
Adam J. Stewart
9a71a76461
py-tfdlpack: add new package (#15583) 2020-03-20 10:08:54 +01:00
Hadrien G
fdf363eaad
acts-core: added v0.18, updated boost dependency (#15584) 2020-03-20 10:06:45 +01:00
Andreas Baumbach
3f83d4d8f5
htop: add missing python build dependency (#15585) 2020-03-20 10:05:30 +01:00
Kevin Huck
625bf187d2
perfstubs: added new package (#15547) 2020-03-20 09:41:36 +01:00
Andrew Gaspar
e2cf6f5b1b
Improvements to Rust's Installation (#15395)
* Add sources and resources for each version of Rust

* install bootstrapping compiler into stage

* Add libgit2

* Install bootstrapping compiler correctly

* implement full rust bootstrap

* Remove support for Rust pre-1.14

Also add lots of comments

* Support only Rust 1.17 and newer

* Remove < 1.23 versions of Rust

* Change the layout of rust_releases for maintainability

* Remove LLVM variant

* Address flake8 issues

* Make libgit2 curl variant default False, conflict 0.28 and newer

* Remove binutils dependency

* Add ARM64 while we're at it

* flake8

* use the 'python' routine rather than relying on the correct python to be picked up
2020-03-19 22:57:41 -05:00
darmac
a89c5b36f0
add new package: bcache (#15563)
* add new package: bcache

* add depends: gettext for libintl
2020-03-19 22:57:04 -05:00
darmac
ce7cd7a5ab
add new package: libiscsi (#15579) 2020-03-19 22:35:59 -05:00
Nithin Senthil Kumar
b522296a5a
Update MVAPICH2 package for 2.3.3 release (#15578)
Co-authored-by: senthilkumar.16 <senthilkumar.16@nowlab.cse.ohio-state.edu>
2020-03-19 20:59:00 -05:00
Greg Becker
e5f8b093a9
Cray bugfix: TERM missing while reading default target (#15381)
Bug: Spack hangs on some Cray machines

Reason: The TERM environment variable is necessary to run bash -lc "echo $CRAY_CPU_TARGET", but we run that command within env -i, which wipes the environment.

Fix: Manually forward the TERM environment variable to env -i /bin/bash -lc "echo $CRAY_CPU_TARGET"
2020-03-19 15:11:50 -07:00
Teodor Nikolov
a61c53a5c9
cosma: added package at v2.0.2 (#15497)
* [new package] COSMA

* Use virtual dependencies
2020-03-19 14:50:12 -05:00
Jordan Ogas
f9e58a52da
add charliecloud/0.14; remove umoci/skopeo; remove builder variant (#15573)
* add charliecloud/0.14; remove umoci/skopeo; remove builder variant

* fix typo

* add maintainer; add explicit config doc options; add py-requests as run dependency

* add autoconf build dependencies
2020-03-19 14:49:11 -05:00
Kai Germaschewski
b583b0e112
petsc fix hdf5 (#15572)
* petsc: add checksum for 3.12.4

* petsc: constrain hdf5 to <= 1.10.x

Current petsc will error when being build with hdf5 1.12, so this ensures that
a compatible hdf5 will be used. Fix suggested by @balay.
2020-03-19 11:42:19 -05:00
darmac
ef68d1f5df
add new package: ntirpc (#15561) 2020-03-19 11:22:03 -05:00
darmac
8142b2dc6b
add new package: yarn (#15562) 2020-03-19 11:21:37 -05:00
Yannik Stradmann
bfa72ed926
Add package: py-deprecated (#15571)
https://github.com/tantale/deprecated
2020-03-19 11:15:19 -05:00
Todd Gamblin
3255eaba0d refactor: spack.package.possible_dependencies() handles virtuals
- [x] move some logic for handling virtual packages from the `spack
  dependencies` command into `spack.package.possible_dependencies()`

- [x] rework possible dependencies tests so that expected and actual
  output are on the left/right respectively
2020-03-19 09:00:40 -07:00
Todd Gamblin
7cfa497912 bugfix: spack.package.possible_dependencies() should return virtuals
`spack.package.possible_dependencies()` was forgetting to pass the
`visited` dict to recursive calls; this fixes it
2020-03-19 09:00:40 -07:00
Michael Kuhn
0b1b8c3936
openssl: added v1.1.1e and v1.0.2u (#15568) 2020-03-19 15:34:18 +01:00
darmac
363cf9f9b1
update attr version to 2.4.48 (#15535)
* update attr version to 2.4.48

* attr: remove redundant make() in install()
2020-03-19 09:24:35 -05:00
Toyohisa Kameyama
a3cb1b8e7e
amdblis + blis: fix spack info and libs query (#15566) 2020-03-19 12:28:18 +01:00
Adam J. Stewart
14e2c42bce
py-matplotlib: add 3.2.1 (#15560) 2020-03-18 22:58:39 -05:00
Patrick Gartung
8bffa57ac4
Buildcache: fix relocation of binaries with relative rpaths (#15558) 2020-03-18 22:37:09 -05:00
Mark W. Krentel
69231c7d18
hpctoolkit: restore binutils 2.34 for master (#15556)
Hpctoolkit master was recently updated to test for and allow old
binutils <= 2.33.1 and/or new binutils 2.34.  Older hpctoolkit up to
2030.03.01 will forever require :2.33.1.

Adjust the libunwind dependency for safety with the current
concretizer.
2020-03-18 22:19:25 -05:00
Axel Huebl
7bcc41018f
Split: Fabtest/libfabric (#15557)
Fabtests provides runtime analysis tools and examples of libfabric.

As with other projects that are tightly version-bound, e.g.
`py-adios` and `adios`, the fact that releases stem from the same
repo does not imply they should be the same package.

Remove resources, which complicate the libfabric build, and update
the fabtests package accordingly.
2020-03-18 18:04:01 -07:00
Kai Germaschewski
3df712a385
Upstreams: don't write metadata directory to upstream DB (#15526)
When trying to use an upstream Spack repository, as of f2aca86 Spack
was attempting to write to the upstream DB based on a new metadata
directory added in that commit. Upstream DBs are read-only, so this
should not occur.

This adds a check to prevent Spack from writing to the upstream DB
2020-03-18 16:41:18 -07:00
Kelly (KT) Thompson
1bcc80ec5d
Trilinos: Add more variants (~netcdf ~matio ~glm) (#15483)
* Trilinos: Add more variants

+ Provide three new variants to allow building trilinos without netcdf, matio,
  or glm.
+ No change to defaults.

* Fix style issue.
2020-03-18 17:05:51 -05:00
Neil Flood
432bdeee85
Tuiview movetogithub (#15498)
* py-tuiview: Source has moved to github

* py-tuiview: Explicitly require +python on gdal dependency

* py-tuiview: Versions up to 1.1.99 are qt4 only

* py-tuiview: Add version 1.2.6, which is qt5 only

* Explicit version range on gdal dependency
2020-03-18 17:05:05 -05:00
Satish Balay
6a51d540f1
petsc@3.7 fix dependency of superlu-dist@5.1.3 (#15551) 2020-03-18 17:04:38 -05:00
Adam J. Stewart
51f8744ab7
py-horovod: set appropriate build env vars (#15548)
* py-horovod: set appropriate build env vars

* mxnet: add maintainer

* py-horovod: fetch git submodules

* py-torch: fix CUDA conflicts
2020-03-18 17:01:20 -05:00
ktsai7
77b11433b3
modified spackage for flecsi and cinch (#15555) 2020-03-18 15:46:29 -06:00
gauthier12
ff29599578
adol-c:updating sources location (#15532)
* adol-c:updating sources location

* Update var/spack/repos/builtin/packages/adol-c/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-18 15:13:57 -05:00
Sinan
3bcb5b3a59
package/QGIS: fix cmake/FindPyqt.py (#15455)
* fix cmake/FindPyqt.py

* apply patch

* generalize patch

* rename patch

* fix typo

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@github>
2020-03-18 13:19:46 -05:00
Sinan
056fc99676
Use python extend_path as pyqt sip fix (#15297)
* try extend path to solve PyQt5.sip not found issue

* disable private sip installation in sippackage class

* undo manual PyQt5 dir creation in py-sip site-packages dir

* fix typo

* fix typo

* also apply fix to PyQt4

* tidy up

* flake8 and tidy up

* tidy and undo hardcoding of python_include_dir

* replace hardcoded python inc dir

* fix minor issues

* rethink include dir variable name

* improve style

* add new versions

* implement new sip setup to qsci installation

* set sip-incdir correctly for the new setup

* setup extend_path thing before qsci python bindings

* take care of conflict

* flake8

* also extend for PyQt4

* improve style

* improve style

* SipPackage build sys should depend on py-sip

* consolidate extend_path fixes into SipPackage

* fix typo

* fix bugs

* flake8

* revert sip doc to pre-resource setup

* import os module

* flake8

Co-authored-by: Sinan81 <sbulut@3vgeomatics.com>
2020-03-18 13:19:27 -05:00
Nick Booher
156b59c2f1
revbayes: Update pre-build process (#15485) 2020-03-18 13:18:45 -05:00
Benjamin Tovar
8cdd78cd1d
Cctools 7.1.0 (#15506)
* update to 7.1.0

* adds gettext as dependency (needed to link with python)

* disable python2 or python3 as needed
2020-03-18 13:14:45 -05:00
darmac
9372783de6
add new package: acl (#15514) 2020-03-18 13:12:40 -05:00
darmac
b52b082627
add new package: userspace-rcu (#15515) 2020-03-18 13:12:02 -05:00