Commit graph

27007 commits

Author SHA1 Message Date
Melven Roehrig-Zoellner
67154a1088
cudnn: adjust version dependency on CUDA (#31763) 2022-08-07 08:27:51 -07:00
Vanessasaurus
86be4666fc
flux packages used in a spack view will already be unshallow (#31955)
* flux packages used in a spack view will already be unshallow
and this particular command will error and break the entire build. Instead
we want to catch the ProcessError and allow for a regular fetch.
* final tweaks to add missing sqlite and fallback to fetch

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2022-08-06 12:05:29 -07:00
Ryan Marcellino
75d1cb469f
py-simpleeval: new package (#31968) 2022-08-06 12:48:09 -05:00
eugeneswalker
0efadcae16
curl@7.84.0: patch easy_lock.h (https://github.com/curl/curl/pull/9054) (#31950) 2022-08-06 18:13:12 +02:00
Adam J. Stewart
7966e9bfb6
py-jaxlib: bazel 5 not yet supported (#31962) 2022-08-06 09:12:13 -07:00
Adam J. Stewart
6d021a9878
Perl: set PERL5LIB for test deps (#31685) 2022-08-05 15:31:56 -07:00
牟展佑
c5fb023c41
python: add @3.10.6 (#31951) 2022-08-05 15:29:59 -06:00
iarspider
8ca2ee2bbd
Add checksum for py-numexprt 2.8.3 (#31900) 2022-08-05 15:29:46 -06:00
Luke Diorio-Toth
baf3b7299b
py-flye: added v2.7-2.9 (#31956) 2022-08-05 14:17:31 -07:00
Jen Herting
42de3ff968
jxrlib-debian: new package (#31877)
Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-05 11:49:46 -06:00
Massimiliano Culpo
65a4125dd0
spack mirror: skip non-concretizable specs (#31897)
fixes #31736

Catch errors when concretizing specs and report them as
debug messages. The corresponding spec is skipped.

Co-authored-by: Greg Becker <becker33@llnl.gov>
2022-08-05 19:19:51 +02:00
Eric Brugger
fefab26f01
Add vtkm variant to visit spack package. (#31887) 2022-08-05 10:25:56 -06:00
downloadico
e30a8e70ce
seq-gen: add new package (#31916) 2022-08-05 15:12:06 +00:00
Harmen Stoppels
519a2d2b15
rdma-core: latest (patch) releases (#31943) 2022-08-05 07:28:11 -07:00
Harmen Stoppels
b07b017dc5
patchelf: 0.15.0 (#31946) 2022-08-05 07:27:00 -07:00
dunatotatos
235f27a815
krakenuniq: add new package. (#31944) 2022-08-05 14:31:41 +02:00
Massimiliano Culpo
5bf6b7e6a5
Refactor cmd/install.py for better readability (#31936)
* Extracted two functions in cmd/install.py

* Extracted a function to perform installation from the active environment

* Rename a few functions, remove args from their arguments

* Rework conditional in install_from_active_environment to reduce nesting in the function

* Extract functions to parsespecs from cli and files

* Extract functions to getuser confirmation for overwrite

* Extract functions to install specs inside and outside environments

* Rename a couple of functions

* Fix outdated comment

* Add missing imports

* Split conditional to dedent one level

* Invert check and exit early to dedent one level when requiring user confirmation
2022-08-05 12:36:33 +02:00
Luke Diorio-Toth
901e6cb5e1
bracken: added new version and removed depreciated version (#31904) 2022-08-05 09:16:14 +02:00
Frank Willmore
08f403146e
wps: add mpi dependency (#31855) 2022-08-05 08:58:32 +02:00
Ryan Mulhall
4114a7f91d
Add new fms version 2022.03 (#31901)
Co-authored-by: rem1776 <Ryan.Mulhall@lscamd50-d.gfdl.noaa.gov>
2022-08-05 00:17:53 -06:00
Harmen Stoppels
a80c0e0217
mbedtls, xz: add missing install_name fixes on macOS (#31919) 2022-08-05 08:10:42 +02:00
Nils Vu
bb9744213f
spectre: add v2022.07.18 and v2022.08.01 (#31633) 2022-08-05 08:09:30 +02:00
dunatotatos
739d98801f
qtltools: fix prefix in Makefile (#31929) 2022-08-05 08:03:25 +02:00
psakievich
ddc373b4e1
Fix doc format for code blocks: GitRef versions (#31937)
Rendering was not pretty using `console` from #31914
2022-08-05 02:01:03 +00:00
Axel Huebl
465fa7a5f6
Add: pyAMReX (#31915)
* Add: pyAMReX

Add the new pybind11 project `pyAMReX` as `py-amrex` package.

* Fix PEP8 Style
2022-08-04 16:57:29 -07:00
Jonathon Anderson
6cc5a657fb
Add checksum for py-identify 2.5.3 (#31935)
* Add checksum for py-identify 2.5.3

* Update package.py
2022-08-04 16:57:48 -06:00
Jonathan R. Madsen
6970beb647
Omnitrace version 1.3.1 (#31911) 2022-08-04 15:50:16 -07:00
Olivier Cessenat
1c6830dd7a
ruby-asciidoctor: adding version 2.0.17 (#31927) 2022-08-04 15:46:52 -07:00
downloadico
d458d1feb2
tassel: add version 3.0.174 (#31917)
* tassel: add version 3.0.174
fix naming of 5.2.39 from "2017-07-22"

* changed single quotes to double quotes to appease the gods ;)

* fixed style issues
2022-08-04 15:40:56 -07:00
Cameron Rutherford
68a1d558b1
HiOp: use ginkgo@glu_experimental with develop. (#31934) 2022-08-04 15:08:32 -07:00
eugeneswalker
25b1451ea9
openblas%cce: patch to support -hnofortran (#31931) 2022-08-04 21:12:53 +00:00
Chris Green
20de47a1e2
Move type hint to satisfy Python 3.6, 3.7 interpreters (#31932) 2022-08-04 20:48:05 +00:00
psakievich
d67ead5978
Add documentation for git refs as versions (#31914)
* document git commit versions

Include documentation for manually specifying associated known version

* document spack develop command

Co-authorerd-by: psakievich <psakiev@sandia.gov>
Co-authored-by: Gregory Becker <becker33@llnl.gov>
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-08-04 13:20:33 -07:00
psakievich
3b1401f292
Git Ref versions can be paired to defined versions in the spec (#30998)
The current use of git ref's as a version requires a search algorithm to pick the right matching version based on the tags in the git history of the package.

This is less than ideal for the use case where users already know the specific version they want the git ref to be associated with. This PR makes a new version syntax [package]@[ref]=[version] to allow the users to specify the exact hash they wish to use.
2022-08-04 13:17:34 -07:00
iarspider
19a8bb53f0
Add checksums for py-onnx 1.10.1, 1.11.0, 1.12.0 (#31891)
* Add checksums for py-onnx 1.10.1, 1.11.0, 1.12.0

* Update package.py
2022-08-04 09:56:43 -07:00
iarspider
5512adbfc7
Add checksum for py-notebook 6.4.12 (#31924) 2022-08-04 09:54:44 -07:00
iarspider
ae6734a228
Add checksum for py-ipython 7.31.1 (#31923) 2022-08-04 09:53:15 -07:00
Auriane R
5c3e4f4a92
pika: add v0.7.0 (#31906) 2022-08-04 15:20:15 +00:00
Marie Houillon
2e487a90e9
New version for openCARP packages, v11.0 (#31652)
Co-authored-by: openCARP consortium <info@opencarp.org>
2022-08-04 16:32:12 +02:00
Massimiliano Culpo
0e40804cd0
Deprecate support for Python 3.5 (by removing it from CI) (#31908)
* Deprecate support for Python 3.5 (by removing it from CI)

* Restore Python 3.9
2022-08-04 15:26:56 +02:00
Filippo Spiga
80e6b6647f
Adding JUBE 2.4.1, 2.4.2 and 2.4.3 (#31921) 2022-08-04 12:10:06 +02:00
iarspider
9173e1ad28
Add checksum for py-arrow 1.2.1 and 1.2.2 (#31894)
* Add checksum for py-arror 1.2.1 and 1.2.2

* Update package.py

* Update var/spack/repos/builtin/packages/py-arrow/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

* Update package.py

* Update package.py

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-08-04 02:01:21 +00:00
Massimiliano Culpo
9a48035e49 asp: refactor low level API to permit the injection of configuration
This allows writing extension commands that can benchmark
different configurations in clingo, or try different
configurations for a single test.
2022-08-03 18:01:08 -07:00
Axel Huebl
e90ea79347
AMReX: 1D Option (#31913)
Expose 1D support in AMREX_SPACEDIM.
2022-08-03 16:54:51 -06:00
eugeneswalker
2b04c4f840
sundials@6.1.0:6.2.0 +rocm: patch nvector to use pic (#31910)
* sundials@6.1.0:6.2.0 +rocm: patch nvector to use pic

* e4s ci: add sundials +rocm
2022-08-03 16:01:59 -06:00
Cameron Rutherford
3a62f3aeae
ExaGO: disable Python with rocm+ipopt. HiOp: fix umpire+raja costraints. RAJA: fix option naming for 0.14.0 (#31880) 2022-08-03 15:21:58 -06:00
Jen Herting
43be9a1ac1
New package: py-glymur (#31875)
* [py-glymur] New Package: py-glymur

* [py-glymur] fixed copyright line

* [py-glumur] update import ine

* [@spackbot] updating style on behalf of qwertos

Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-03 10:13:25 -07:00
iarspider
849f01df86
Add checksum for py-smmap 3.0.5,4.0.0,5.0.0 (#31898) 2022-08-03 10:07:22 -07:00
Adam J. Stewart
6b23fe857e
py-torchgeo: lock down pytorch-lightning version (#31886) 2022-08-03 10:26:38 -06:00
Glenn Johnson
26ec46e834
r-rhtslib: fix issue with git commit for v1.28 (#31653)
There is a problem with the git repo for rhtslib that apparently led to
a bad version entry during the previous round of package updates. A git
checkout on the commit also fails so use branch for most recent version.
2022-08-03 10:22:05 -06:00