Satish Balay
2b07379831
petsc: when hdf5 depends on zlib - petsc+hdf5 should also be configur… ( #6189 )
...
* petsc: when hdf5 depends on zlib - petsc+hdf5 should also be configured with zlib
* petsc: fix dependency [of zlib to be on hdf5 - and not on petsc]
* petsc: use the fact that hdf5/package.py has a hard dependency on zlib [so no need to check for this dependency in code]
recommended-by: @davydden
* petsc: change hdf5 dependency to 'hdf5+hl' as petsc configure is looing for -lhdf5_hl
https://github.com/spack/spack/issues/5846
2017-11-09 11:34:59 -08:00
Satish Balay
8d512ce9ae
magma: cuda updates [from xsdk-0.3.0 branch] ( #6160 )
...
- add gcc dependency per cuda versions
- Fix for cuda-9.0 as it does not support sm20
nvcc fatal : Unsupported gpu architecture 'compute_20'
2017-11-09 11:34:40 -08:00
lingnanyuan
ee867db5de
r-log4r: Create new package. ( #6133 )
2017-11-09 10:23:48 -07:00
Simone Bnà
c79a0fbbf2
mesa: fixed url for version ( #5818 )
2017-11-09 10:16:52 -07:00
Benedikt Riedel
266de67c24
ROOT needs to have a consistent version of binutils, as it is very sensitive to the version of libopcodes. You can't move the code from one system (with the same OS) as another. ( #6226 )
2017-11-09 06:49:27 -08:00
lingnanyuan
935a6b00d7
r-analysispageserver: Create new package. ( #6135 )
2017-11-09 07:23:10 -07:00
Levi Baber
74d38b3150
py-dlcpar ( #6229 )
...
* py-dlcpar: new package
* py-dlcpar: whitespace
2017-11-09 07:21:56 -07:00
baip
acf6653933
pexsi: add version 0.10.2 ( #6232 )
2017-11-09 07:21:39 -07:00
David Gardner
d9fc26b2a5
add sundials 3.1.0 ( #6230 )
2017-11-09 14:04:03 +01:00
Luigi Calori
24bb3c61de
fix perl dependent modules, #5900 ( #5937 )
...
* FIX perl dependent environmwent setup to avoid void lines in generated modules as #5900
* remove debug prints
* fix flake8
2017-11-08 22:10:50 -07:00
Alfredo Adolfo Gimenez
a754bd7eee
Package/sosflow ( #6122 )
...
* Added missing deps to libffs
* SOSflow spack package pointing to sos_flow feature/spack branch
* Using tag for spack build
* Change url to spack/spack
2017-11-08 22:07:37 -07:00
David Gardner
a656bc300a
add patch for building sundials ( #6161 )
...
* add patch for building sundials on mac
* add upper limit on the patch
2017-11-08 22:06:34 -07:00
Yifan Zhu
3159841e33
r-callr: created new package ( #6223 )
2017-11-08 21:59:21 -07:00
lingnanyuan
72bec9a7a0
r-rex: Create new package. ( #6221 )
2017-11-08 21:57:09 -07:00
Yifan Zhu
ca2ffd9299
r-rvest: created new package ( #6220 )
2017-11-08 21:56:50 -07:00
Levi Baber
ef126523f1
fastme: new package ( #6219 )
2017-11-08 21:56:32 -07:00
Yifan Zhu
edc1e6a0d8
r-selectr: created new package ( #6218 )
2017-11-08 21:56:02 -07:00
lingnanyuan
e57564e899
r-tseries: Create new package. ( #6216 )
2017-11-08 21:55:45 -07:00
sknigh
699748a2be
Added missing build dependency to json-c ( #6211 )
2017-11-08 21:55:28 -07:00
lingnanyuan
e2004076b1
r-allelicimbalance: Create new package. ( #6044 )
2017-11-08 21:52:46 -07:00
Yifan Zhu
ac7f5a1af1
r-mzr: created new package ( #6206 )
2017-11-08 19:53:00 -07:00
Yifan Zhu
cd4b19ffa8
r-msnbase: new package ( #6207 )
2017-11-08 19:52:38 -07:00
lingnanyuan
912d39908d
r-sqldf: Create new package. ( #6208 )
2017-11-08 19:52:08 -07:00
lingnanyuan
4585d6426a
r-gsubfn: Create new package. ( #6209 )
2017-11-08 19:51:51 -07:00
Yifan Zhu
b110cd0b12
r-vsn: new package ( #6210 )
...
* r-hexbin: updated md5
* r-vsn: created new package
2017-11-08 19:51:35 -07:00
lingnanyuan
7848e0d4b6
r-quantmod: Update version to 0.4-11 ( #6212 )
2017-11-08 19:51:13 -07:00
Yifan Zhu
ecdaea1c8e
r-xml2: created new package ( #6217 )
2017-11-08 19:50:53 -07:00
lingnanyuan
1c2292dcd4
r-timedate: Create new package. ( #6215 )
2017-11-08 19:50:37 -07:00
lingnanyuan
5558cce438
r-fracdiff: Create new package. ( #6214 )
2017-11-08 19:50:18 -07:00
lingnanyuan
2cd57876c7
r-forecast: Create new package. ( #6213 )
2017-11-08 19:49:58 -07:00
Christoph Junghans
b3f678c1c0
gasnet: add 1.30.0 ( #6167 )
...
* gasnet: add 1.30.0
* gasnet: expose more options as variants
* gasnet: change defaults
2017-11-08 19:43:13 -07:00
Audrey Thoma
877bee3cb5
guidance: new package ( #6079 )
...
* guidance: new package
* not really fixed yet
* adding loop
* fixing url
* dang typos
2017-11-08 14:07:13 -07:00
lingnanyuan
dd3a6d7f18
r-ampliqueso: Create new package. ( #6132 )
2017-11-08 14:05:53 -07:00
Yifan Zhu
96f70606e8
r-tiff: created new package ( #6134 )
2017-11-08 14:05:33 -07:00
lingnanyuan
f73b409968
r-anaquin: Create new package. ( #6138 )
2017-11-08 14:05:17 -07:00
lingnanyuan
2cba0d4d5f
r-qvalue: Create new package. ( #6137 )
2017-11-08 14:05:00 -07:00
baip
4273ebac3c
libxsmm: add libs property ( #6193 )
2017-11-08 14:04:26 -07:00
lingnanyuan
17b9a479b6
r-aneufinderdata: Create new package. ( #6192 )
2017-11-08 14:03:35 -07:00
lingnanyuan
bb619aa091
r-aneufinder: Create new package. ( #6191 )
2017-11-08 14:03:22 -07:00
Christoph Junghans
d8db861fec
flecsi: fix build ( #6168 )
2017-11-08 14:03:05 -07:00
lingnanyuan
04f32377b2
r-rhtslib: Create new package. ( #6164 )
2017-11-08 14:02:12 -07:00
Audrey Thoma
3fcc911737
kraken: new package ( #6163 )
2017-11-08 14:01:55 -07:00
Audrey Thoma
743a87abb3
fpc: new package ( #6162 )
2017-11-08 14:01:31 -07:00
lingnanyuan
6556a5c914
r-cowplot: Create new package. ( #6190 )
2017-11-08 13:58:57 -07:00
Yifan Zhu
5f70d578ec
r-maldiquant: created new package ( #6188 )
2017-11-08 13:58:43 -07:00
lingnanyuan
860834e094
r-reordercluster: Create new package. ( #6187 )
2017-11-08 13:58:21 -07:00
Yifan Zhu
605c8e65b3
r-mzid: created new package ( #6186 )
2017-11-08 13:58:04 -07:00
Yifan Zhu
98baf49ba6
r-xde: created new package ( #6185 )
2017-11-08 13:57:46 -07:00
lingnanyuan
3943bc945b
r-ggdendro: Create new package. ( #6184 )
2017-11-08 13:57:30 -07:00
lingnanyuan
241e1b56b5
r-dnacopy: Create new package. ( #6183 )
2017-11-08 13:57:15 -07:00
Yifan Zhu
92a582d5f8
r-mergemaid: created new package ( #6182 )
2017-11-08 13:56:59 -07:00
lingnanyuan
146db9adef
r-bamsignals: Create new package. ( #6181 )
2017-11-08 13:56:34 -07:00
Yifan Zhu
87aafeb78a
r-xmapbridge: created new package ( #6180 )
2017-11-08 13:56:15 -07:00
Sergey Kosukhin
c7a855ba57
Missing dependency for 'cdo'. ( #6175 )
2017-11-08 13:55:57 -07:00
baip
ed00757265
gcc: add 5.5.0 ( #6171 )
2017-11-08 20:27:08 +01:00
vishalkenchan
392929ba77
lammps: add more packages ( #6174 )
...
* lammps : adding new varients and dependencies therein
* Update package.py
* removing trailing whitespaces
2017-11-08 09:01:14 -07:00
Matthew Scott Krafczyk
00d48e60bf
Fix for nghttp2 installation ( #5904 )
...
nghttp2 depends on python, and requires the install directory to exist,
and contain the python module directory which it will eventually
install the python modules into.
2017-11-07 15:59:15 -08:00
James Dickson
841d42b308
TyphonIO: new package + Updated MACSio package ( #6177 )
2017-11-07 13:13:06 -07:00
Audrey Thoma
8bae192d5c
repeatmasker: new package ( #6108 )
2017-11-06 17:27:42 -07:00
Michael Kuhn
ca73103dac
Introduce static_to_shared_library function ( #6092 )
...
The static_to_shared_library function takes an existing static library
and produces a shared library based on it.
2017-11-06 17:21:46 -07:00
Satish Balay
dc78e60c83
trilinos: update hdf5 dependency to use 'hdf5+hl' ( #6025 )
...
* trilinos: update hdf5 dependency to use 'hdf5+hl'
Without this change - I get the following error [triggered by 161dca6d5c9810f808
2017-11-06 13:03:06 -08:00
Luigi Calori
f0d33df3a9
some missing X11 "*proto" dependencies ( #6158 )
...
* fix xinput deps
* adding other x11 proto missing deps, see #6157
2017-11-06 13:02:05 -08:00
Satish Balay
436ebc4490
petsc: update petsc dependency on superlu-dist ( #6159 )
2017-11-06 12:52:10 -08:00
Yifan Zhu
cd4d26705e
Bioconductor package url change ( #5797 )
2017-11-06 11:17:59 -07:00
Michael Kuhn
450f2fa034
likwid: Use external lua if possible ( #6009 )
2017-11-06 11:14:34 -07:00
Douglas Duckworth
47b15feec3
added new package - MotionCor2 ( #6151 )
2017-11-06 11:09:46 -07:00
Denis Davydov
f538b7ac3e
dealii: make sure bundled libs are not used ( #6106 )
2017-11-06 12:38:59 +01:00
Besnard Jean-Baptiste
84c6fea32e
Graphviz : Add a GTS variant ( #6149 )
...
Enable support for the GNU Triangulated Surface Library
- New variant +gts for graphviz
- Optionnal dependency for GTS (already packaged)
2017-11-05 16:55:44 -08:00
Douglas Duckworth
ccc51cea7d
added relion v 2.1 ( #6023 )
...
* added relion v 2.1
* relion 2.1 - misssed comma
* relion now pulling from master branch - removed 2.03 - added cuda 8 as dependency given 9 does not yet work with relion per https://github.com/3dem/relion/issues/296
2017-11-05 15:01:21 -08:00
Ben Boeckel
22df09315f
Re-add list_url for all R packages ( #6110 )
...
* r-igraph: find old packages in the archive
Fixes #6104 .
* r-irlba: find old packages in the archive
Fixes #6101 .
* r-lazyeval: find old packages in the archive
Fixes #6102 .
* packages: set list_url for all packages hosted on CRAN
* packages: consistently use the CRAN archive URLs
2017-11-05 13:42:24 -08:00
Adam Moody
2a8c97d440
dtcmp: add v1.1.0 ( #6146 )
2017-11-05 09:25:03 -08:00
Satish Balay
d34d0d6cbc
petsc: update to version 3.8.1 ( #6150 )
...
* petsc: update to version 3.8.1
* petsc: add in conflict between petsc-3.8.0 & mkl
2017-11-05 09:24:42 -08:00
Axel Huebl
5d9dd24daa
ISAAC 1.3.3 ( #6152 )
...
Add a new release of ISAAC.
2017-11-05 09:24:18 -08:00
Todd Gamblin
05fa302655
Replace github.com/llnl/spack with github.com/spack/spack ( #6142 )
...
We moved to a new GitHub org! Now make the code and docs reflect that.
2017-11-04 17:08:04 -07:00
vishalkenchan
386e0af089
add rol variant ( #6105 )
2017-11-04 12:14:46 -07:00
Yifan Zhu
9d234c4f8e
r-yapsa: created new package ( #6121 )
2017-11-03 14:21:00 -06:00
Yifan Zhu
fb1160d052
r-keggrest: created new package ( #6120 )
2017-11-03 14:20:36 -06:00
lingnanyuan
3921948b03
r-statmod: Create new package. ( #6119 )
2017-11-03 14:20:14 -06:00
lingnanyuan
b204c7e793
r-deseq: Create new package. ( #6118 )
2017-11-03 14:19:38 -06:00
lingnanyuan
f91c25ddee
r-samr: Create new package. ( #6117 )
2017-11-03 14:19:16 -06:00
lingnanyuan
d54627659a
r-impute: Create new package. ( #6116 )
2017-11-03 14:18:46 -06:00
lingnanyuan
95e290eaf3
r-altcdfenvs: Create new package. ( #6115 )
2017-11-03 14:18:17 -06:00
lingnanyuan
64689bdb01
r-makecdfenv: Create new package. ( #6114 )
2017-11-03 14:17:58 -06:00
lingnanyuan
b614c7970b
r-hypergraph: Create new package. ( #6113 )
2017-11-03 14:17:36 -06:00
Axel Huebl
5a4544ab05
ISAAC 1.3.2 ( #6129 )
...
Add a new release of ISAAC.
2017-11-03 14:58:38 +01:00
Ben Boeckel
be01b2d5f0
aspell: refuse to work with non-global extensions
...
Aspell compiles in the paths it looks for rather than looking relative
to its binary location. There are also no environment variables to
redirect it other than changing the path to the configuration file it
looks at.
2017-11-02 18:45:40 -07:00
Ben Boeckel
a81485cb3f
perl: support extensions in views
2017-11-02 18:45:40 -07:00
Oliver Breitwieser
643a28aac5
python: extensions support for easy-install.pth
2017-11-02 18:45:40 -07:00
Ben Boeckel
d5a3d9d20e
view: test conflicting packages in views
2017-11-02 18:45:40 -07:00
Ben Boeckel
13b669de8e
view: test that extension paths exist
2017-11-02 18:45:40 -07:00
Ben Boeckel
41dfba0ba1
extension1: add a second version
2017-11-02 18:45:40 -07:00
Ben Boeckel
a7925bb927
bdftopcf: require xproto and fontsproto at build time ( #6112 )
...
These are technically "link" depends of libxfont, but they have no
actual libraries.
Fixes #5936 .
2017-11-02 15:47:18 -06:00
lingnanyuan
13f1781bea
Add package r-reportingtools and update url for its dependencies. ( #6071 )
...
* r-reportingtools: Create new package.
* r-go-db: Update url.
* r-gseabase: Update url.
* r-pfam-db: Update url.
2017-11-02 14:21:32 -06:00
Michael Kuhn
d1db161aeb
adios: Fix hdf5 and sz dependencies ( #6016 )
...
- hdf5's +hl variant is required because the build uses libhdf5_hl.
- sz is only compatible up to version 1.4.10 because the library has
been renamed to libSZ in 1.4.11.
2017-11-02 13:41:25 -06:00
Brice Goglin
3a1b013291
hwloc: add version 1.11.8 ( #6099 )
...
Signed-off-by: Brice Goglin <Brice.Goglin@inria.fr>
2017-11-02 13:40:46 -06:00
Audrey Thoma
f9341857c7
arlecore: new package ( #6109 )
2017-11-02 13:40:03 -06:00
Christoph Junghans
c4db3d384e
gromacs: add develop version ( #6098 )
2017-11-02 15:16:21 +01:00
Adam J. Stewart
e47ceefc43
sundials+hypre depends on hypre ( #6075 )
2017-11-02 08:16:43 +01:00
Denis Davydov
11ba60413b
the-silver-searcher: add missing dependency ( #6095 )
2017-11-02 08:10:40 +01:00
Michael Kuhn
61ed583266
xqilla: Use append instead of extend ( #6094 )
2017-11-02 08:09:24 +01:00
