Commit graph

25301 commits

Author SHA1 Message Date
kwryankrattiger
1599d841c0
ECP-SDK: ParaView 5.11: required for CUDA (#29054)
* ECP-SDK: ParaView 5.11: required for CUDA

* Add conflict with ParaView@master

Because of the additional constraints for cuda, ParaView@master may be
selected unintentionally. Prefer older versions of ParaView without cuda
to master with cuda.
2022-03-02 13:17:25 -05:00
QuellynSnead
e6dcd382ee
Paraview: Use 'UNIX Makefiles' instead of ninja as the CMake generator for XL (#29163)
* hypre: Add releases 2.21.0 and 2.22.0

* Revert "hypre: Add releases 2.21.0 and 2.22.0"

This reverts commit 8921cdb3ac772794f82ff07b0aa816c204aca921.

* Address external linkage failures in elfutils 0.185:
  https://bugs.gentoo.org/794601
  https://sourceware.org/pipermail/elfutils-devel/2021q2/003862.html
Encountered while building within a Spack environment.

* Revert "Address external linkage failures in elfutils 0.185:"

This reverts commit 76b93e4504defd856b62027371064a5e65a027a5.

* paraview: The ninja generator has problems with XL and CCE

See https://gitlab.kitware.com/paraview/paraview/-/issues/21223

* paraview: Add variant to allow choice of cmake generator.
This will be necessary until problems with cmake+ninja on XL and
CCE builds can be resolved.

See https://gitlab.kitware.com/paraview/paraview/-/issues/21223

* paraview: ninja generator problems with XL/CCE
    By popular preference, abandon the idea of a special variant
    and select the generator based on compiler.

* Greg Becker suggested using the dedicated "generator" method to
pass the choice of makefile generator to cmake.

* paraview: The build errors I saw before with paraview%cce + ninja
have not reappeared in subsequent testing, so I'm dropping it from this
PR. If they re-occur I'll report the issue separately to KitWare.
2022-03-02 11:26:31 -05:00
Manuela Kuhn
a94f11a2b2
py-nibabel: add 3.2.2 (#29266)
* py-nibabel: add 3.2.2

* fix dependencies
2022-03-02 09:50:09 -06:00
Manuela Kuhn
a1f32cdaff
py-msgpack: add 1.0.3 (#29216)
* py-msgpack: add 1.0.3

* remove dependencies
2022-03-02 09:49:38 -06:00
Massimiliano Culpo
8d118104c7
Fix typos when forwarding arguments to traverse_edges (#29261)
A few calls use `deptypes=...` instead of `deptype=...`
2022-03-02 08:43:26 +01:00
Phil Carns
a43e3f3ffb
bmi package: add version 2.8.1 (#29274) 2022-03-01 18:56:44 -08:00
Wouter Deconinck
bab331ff34
assimp package: add version 5.2.2 (#29240) 2022-03-01 18:48:18 -08:00
Wouter Deconinck
d9113eb5ec
gaudi package: add version 36.4 (#29241) 2022-03-01 18:47:21 -08:00
Valentin Volkl
4831daa2dc
sherpa package: deprecate old versions with build failures (#29268) 2022-03-01 18:46:00 -08:00
Phil Carns
d5dd6471fc
mochi-margo package: add version 0.9.7 (#29275) 2022-03-01 18:44:03 -08:00
Glenn Johnson
277f578707
Fix tags attribute for tar (#29189) 2022-03-01 18:35:44 -07:00
iarspider
3478b06262
py-gosam: use legacy setup.py invocation (fixes #29260) (#29264) 2022-03-01 18:31:48 -06:00
Richarda Butler
7268ab75f4
Superlu: Update Spack test dir (#27844)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-03-01 16:20:47 -08:00
Harmen Stoppels
f2c5092588
llvm: add missing system libs (#29270)
```
$ ./bin/llvm-config --link-static --system-libs
-lrt -ldl -lpthread -lm -lz -ltinfo -lxml2
```

`libz` and `libxml2` were missing.
2022-03-01 15:35:38 -07:00
Jen Herting
d05560ee32
New package: py-deepsig (#28480)
* [py-deepsig] New package and several cherry picks

* [py-deepsig] Cleanup of testing comments

* finished package with git reference

* fixed flake8 issue

* [py-deepsig] fixed copyright

* [py-deepsig] switched to version with functional requirements.txt. Ignoring missing README_RAW.md

* [py-deepsig] updated version in pypi variable

* [py-deepsig] simplifying missing readme workaround

Co-authored-by: Doug Heckman <dahdco@rit.edu>
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-03-01 13:21:04 -07:00
Manuela Kuhn
71f081366b
py-neurora: add 1.1.6.1 (#29265) 2022-03-01 13:51:49 -06:00
Manuela Kuhn
327fcf7a54
py-nest-asyncio: add 1.5.4 (#29262) 2022-03-01 13:48:45 -06:00
Manuela Kuhn
8cefe38b0e
py-keyrings-alt: add 4.1.0 (#29177) 2022-03-01 07:20:52 -07:00
Manuela Kuhn
88eb437d94
py-keyring: add 23.5.0 (#29176) 2022-03-01 06:54:10 -07:00
Manuela Kuhn
a155975b8b
mesa: add conflict with llvm@13 (#28870)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2022-03-01 11:10:58 +01:00
Tamara Dahlgren
b20df12d09
test_env_install_two_specs_same_dep: properly check installed specs (#29222) 2022-03-01 10:35:14 +01:00
Harmen Stoppels
f60c6ca485
libuv: remove bash dependency (#29251) 2022-03-01 10:15:22 +01:00
Wouter Deconinck
a3947381c7
assimp: patch for issue that prevents 5.1: from working with qt (#29257) 2022-02-28 18:42:08 -07:00
Manuela Kuhn
6eef12cd10
py-nbclassic: add 0.3.5 (#29220)
* py-nbclassic: add 0.3.5

* Update var/spack/repos/builtin/packages/py-nbclassic/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fix style

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-28 16:36:06 -07:00
Cory Bloor
2bd016895d
rocblas: add spack test support (#27436)
* rocblas: add spack test support

* rocblas: limit spack test support to @4.2.0:

* rocblas: simplify define
2022-03-01 00:26:08 +01:00
Jen Herting
10f3113b3c
New package: py-ci-sdr (#28644)
* clean py-ci-sdr

* [py-ci-sdr] updated copyright

* [py-ci-sdr] added upper bound for python version

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-02-28 15:27:44 -06:00
Massimiliano Culpo
9b298fd7e4
Add a new test to catch exit code failure (#29244)
* Add a new test to catch exit code failure

fixes #29226

This introduces a new unit test that checks the return
code of `spack unit-test` when it is supposed to fail.

This is to prevent bugs like the one introduced in #25601
in which CI didn't catch a missing return statement.

In retrospective it seems that the shell test we have right
now all go through `tty.die` or similar code paths which
call `sys.exit(a)` explicitly. This new test instead checks
`spack unit-test` which relies on the return code from
command invocation in case of errors.
2022-02-28 12:55:24 -08:00
Toyohisa Kameyama
8f4e029e3a
qt: Fix build with Fujitsu compiler. (#29199) 2022-02-27 22:12:36 -05:00
iarspider
d29253bd7a
Add 'master' version for dmtcp (#29211)
* Add 'develop' version for dmtcp

* Update var/spack/repos/builtin/packages/dmtcp/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-02-27 13:34:09 -06:00
iarspider
8eefab4033
New version: py-onnx 1.8.1 (#29214)
* New version: py-onnx 1.8.1

* Update package.py
2022-02-26 11:50:17 -06:00
Ondřej Čertík
abfd300eef
libtermkey: Update to the latest release (#29229)
And add a missing dependency.

Fixes #26672.
2022-02-26 10:15:02 -07:00
Ondřej Čertík
dd5943bc6f
libluv: update to the latest release (#29228)
Fixes #26673.
2022-02-26 10:11:53 -07:00
Seth R. Johnson
00ed99dc16
darwin: propagate build environment variables for Autotools (#28948)
GraphViz has failures due to overriding the default autoconf build
environment variables.
2022-02-26 11:19:40 -05:00
Harmen Stoppels
db2340007a
openmpi: ~gpfs by default (#29218) 2022-02-25 17:51:07 -07:00
Manuela Kuhn
2610423e78
r-rlang: add 1.0.1 (#29040) 2022-02-25 18:19:57 -06:00
Manuela Kuhn
888eb11565
r-foreach: add 1.5.2 (#29062) 2022-02-25 18:19:29 -06:00
Manuela Kuhn
1cc5391443
r-cli: add 3.2.0 (#29005) 2022-02-25 18:18:31 -06:00
Scott Wittenburg
b082c33c85
commands: Propgate command return value as exit code (#29223) 2022-02-25 10:49:56 -08:00
Manuela Kuhn
d62b8f0bf3
py-jupyterlab: add 3.1.19 and 3.2.9 (#29174) 2022-02-24 23:24:13 -06:00
Kinh Nguyen
c17f8d938e
r-units 0.8-0 (#29183) 2022-02-24 17:54:38 -08:00
Glenn Johnson
c6556b7a06
Adjust binutils detection (#29188)
The `spack external find binutils` command was failing to find my system
binutils because the regex was not matching. The name of the executable
follows the string 'GNU' that I tested with three different
installations so I changed the regex to look for that. On my CentOS-7
system, the version had the RPM details so I set the version to capture
the first three parts of the version.
2022-02-24 17:52:45 -08:00
Tim Haines
31c8567007
capstone: update URL (#29190)
* capstone: Change GitHub URL

* capstone: Remove 'master' branch

Only the 'next' branch is used for development/release now.
2022-02-24 17:51:28 -08:00
Harmen Stoppels
8c1e54180e
disable gpfs through --with-gpfs=no (#29181) 2022-02-24 22:39:38 +01:00
Manuela Kuhn
dc01f9597e
py-jedi: add 0.18.1 (#29130)
* py-jedi: add 0.18.1

* fix py-parso version
2022-02-24 15:09:58 -06:00
Manuela Kuhn
8f372fc88f
py-jupyterlab-server: add 2.10.3 (#29172) 2022-02-24 15:07:24 -06:00
Manuela Kuhn
6cc2e7bcd4
py-ipython: add 8.0.1 (#29175) 2022-02-24 15:04:28 -06:00
Manuela Kuhn
d7b9ad6456
py-lxml: add 4.8.0 (#29184) 2022-02-24 14:57:29 -06:00
Seth R. Johnson
ceea479b56
vecgeom: add patch for @1.1.18 +cuda (#29185) 2022-02-24 09:34:42 -07:00
Harmen Stoppels
8bd9527a71
mpich: add pmi=cray support (#29160)
* mpich: add pmi=cray support

After marking `cray-pmi` as external:

```yaml
packages:
  cray-pmi:
    externals:
    - spec: cray-pmi@5.0.17
      prefix: /opt/cray/pe/pmi/5.0.17
```

You can now install

```
spack install something ^mpich pmi=cray
```

and

```console
srun $(spack location -i something)/bin/your_app
```
2022-02-24 16:35:01 +01:00
Manuela Kuhn
205e9f7d73
py-jupyter-client: add 7.1.2 (#29135) 2022-02-24 05:18:18 -07:00