Commit graph

31629 commits

Author SHA1 Message Date
Sam Grayson
f0ec625321
singularityce: add v3.11.3 (#38055) 2023-06-02 08:04:39 +02:00
Manuela Kuhn
d406c371a8
py-formulaic: add 0.6.1 (#38035) 2023-06-01 19:23:15 -04:00
Sean Koyama
42d374a34d
double-batched-fft-library: patch to add search paths to findOpenCL.cmake (#36355)
* double-batched-fft-library: PATCH: add search paths to find libOpenCL

* Apply patch up to version 0.3.6
2023-06-01 16:17:04 -07:00
Sean Koyama
d90e4fcc3d
lua-luafilesystem: update source URL and improve rockspec detection (#36692)
* lua-luafilesystem: updated sources to new URL. Changed versioning to dot-separated versions.

* lua-luafilesystem: override install phase to find correct rockspec

* lua-luafilesystem: improved rockspec detection

* lua-luafilesystem: added lua version constraint for older versions
2023-06-01 16:15:42 -07:00
Manuela Kuhn
a44fde9dc9
py-docutils: add 0.20.1 (#38001) 2023-06-01 18:18:29 -04:00
Manuela Kuhn
9ac8841dab
py-fonttools: add 4.39.4 (#38027) 2023-06-01 18:13:20 -04:00
Manuela Kuhn
a1f87638ec
py-future: add 0.18.3 (#38041)
* py-future: add 0.18.3

* Update var/spack/repos/builtin/packages/py-future/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-06-01 17:48:13 -04:00
Manuela Kuhn
3b55e0a65d
py-executing: add 1.2.0 (#38019) 2023-06-01 17:38:09 -04:00
Massimiliano Culpo
42667fe7fa
Memoize a few hot functions during module file generation (#37739) 2023-06-01 13:36:42 -07:00
Ted Stern
cd27611d2f
Adding libpsm3 package (#37444)
* Adding libpsm3 package
* Make changes suggested by flake8
* Make one more flake8-suggested change, blank line after 'import os'
* Change to standard header to pass flake8 tests
* Update doc string, remove unnecessary comments
* Reviewer-recommende changes
* Alphabetize variants
* Use helper functions
* Change quotes to pass spack style check
2023-06-01 13:01:43 -07:00
Massimiliano Culpo
b111d2172e
py-archspec: add v0.2.1 (#38014) 2023-06-01 14:58:45 -05:00
Tobias Ribizel
055263fa3c
Fix OpenCV detection on Ubuntu (#35336)
* fix OpenCV detection on Ubuntu

* Update package.py

* Simplify version detection

* remove superfluous `return`
2023-06-01 14:38:17 -05:00
Manuela Kuhn
f34f207bdc
py-datalad-neuroimaging: add 0.3.3 (#38017) 2023-06-01 14:31:54 -05:00
snehring
0c9f0fd40d
openssh: depend on krb5+shared when +gssapi (#38034) 2023-06-01 13:17:44 -04:00
pauleonix
24d5b1e645
asio: Add stable versions up to 1.28.0 (#38007)
Co-authored-by: Mikael Simberg <mikael.simberg@iki.fi>

- Add pkgconfig dependency from 1.23.0 onward.
- Add conflict of old versions with new gcc due to missing includes.
- Deprecate uneven minor versions because they are not regarded as stable.
- Add maintainer
2023-06-01 11:09:27 +02:00
Mikael Simberg
616f7bcaef
pika: add 0.16.0 and pika-algorithms 0.1.3 (#38021)
* pika: add 0.16.0

* pika-algorithms: add 0.1.3

---------

Co-authored-by: Alberto Invernizzi <9337627+albestro@users.noreply.github.com>
2023-06-01 04:18:26 -04:00
Greg Becker
dace0316a2
Spec.format: print false attributes if requested (#37932) 2023-06-01 09:08:45 +02:00
Greg Sjaardema
3bb86418b8
seacas: add 2023-05 release, update fmt dependency (#38008)
The fmt dependency for the previous release was incorrect as does not work with latest lib::fmt.  Fixed that specification
2023-06-01 02:48:50 -04:00
Veselin Dobrev
6f6489a2c7
xSDK examples v0.4.0 (#37295)
* [xsdk-examples] Initial commit for v0.4.0

* [xsdk-examples] v0.4.0 depends on xsdk@0.8.0

* add in missing xsdk dependencies

* [xsdk-examples] remove repeated 'depends_on' directive

* [xsdk-examples] simplify and extend a bit the package

[mfem] process more optional dependencies of HiOp

[strumpack, superlu-dist] add a workaround for an issue on Mac

* [mfem] fix the handling of the hiop dependency

* [@spackbot] updating style on behalf of v-dobrev

* [xsdk-examples] enable 'heffte' and 'tasmanian' if enabled in 'xsdk'

* [xsdk-examples] Add PUMI dependency

* [xsdk-examples] Add preCICE dependency

* [xsdk-examples] add +rocm

* heffte: add in a backport fix for building xsdk-examples with cuda

* [xsdk] Remove the explicit requirement for deal.II to be built +hdf5

* ENABLE_ROCM -> ENABLE_HIP

* [hiop] Workaround for CMake not finding Cray's BLAS (libsci)

[xsdk-examples] Set CUDA/HIP architectures; sync cuda/rocm variants with xsdk

* [@spackbot] updating style on behalf of v-dobrev

* [exago] Workaround for CMake not finding Cray's LAPACK/BLAS, libsci

[mfem] Tweaks for running tests under Flux and PBS

* [slate] Pass CUDA/HIP architectures to CMake

* [heffte] For newer CMake versions, set CMAKE_CUDA_ARCHITECTURES

* [hypre] Patch v2.26.0 to fix sequential compilation in 'src/seq_mv'

* [xsdk-examples] Some tweaks in dependencies and compilers used

* [xsdk] Make the 'trilinos' variant sticky

[xsdk-examples] Tweak dependencies

* [slate] Fix copy-paste error

* [xsdk-examples] Workaround for CMakePackage not having the legacy
   property 'build_directory'

* [xsdk-examples] Replace the testing branch used temporarily for v0.4.0 with
                the official release

---------

Co-authored-by: Satish Balay <balay@mcs.anl.gov>
2023-05-31 21:57:53 -04:00
Brian Van Essen
543b697df1
CachedCMakePackage: add CUDA/HIP options and improve independent builds (#37592)
* Add CMake options for building with CUDA/HIP support to
  CachedCMakePackages (intended to reduce duplication across packages
  building with +hip/+cuda and using CachedCMakePackage)
* Define generic variables like CMAKE_PREFIX_PATH for
  CachedCMakePackages (so that a user may invoke "cmake" themselves
  without needing to setthem on the command line).
* Make `lbann` a CachedCMakePackage.

Co-authored-by: Chris White <white238@llnl.gov>
2023-05-31 17:35:11 -07:00
QuellynSnead
042dc2e1d8
libtheora: enforce math library (libm.so) linkage (#37891) 2023-05-31 13:45:11 -07:00
Mosè Giordano
f745e49d9a
julia: add patch to fix printing of BigFloat with MPFR v4.2 (#37992) 2023-05-31 15:32:12 -04:00
Michael Kuhn
eda21cdfba
gcc: add 11.4.0 (#37988) 2023-05-31 09:15:45 -04:00
Adam J. Stewart
bc8b026072
py-pandas: add v2.0.2 (#38005) 2023-05-30 22:48:51 -04:00
Tiziano Müller
0f84782fcc
Bugfix: cray manifest parsing regression (#37909)
fa7719a changed syntax for specifying exact versions, which are
required for some compiler specs (including those read as part
of parsing a Cray manifest). This fixes that and also makes a
couple other improvements to manifest parsing.

* Instantiate compiler specs with exact versions (fixes #37893)
* fix slingshot network detection (CPE 22.10+ has libcxi.so
  in /usr/lib64)
* "spack external find": add arg to ignore default dir for cray
  manifests
2023-05-30 18:03:44 -07:00
AMD Toolchain Support
43b86ce282
HPL: amdalloc with AOCC 4.0 (#37757)
* adding amdalloc when using aocc 4


* adding and libm for aocc3.2
2023-05-30 16:40:41 -07:00
AMD Toolchain Support
d30698d9a8
cp2k fixes for aocc (#37758) 2023-05-30 16:33:00 -07:00
Massimiliano Culpo
8e9efa86c8
Simplify implementation of "get_compiler_config" (#37989) 2023-05-30 15:11:33 -07:00
Jack Morrison
84faf5a6cf
intel-mpi-benchmarks: Add MPI implementation check variant (#37363)
* Add MPI implementation check variant to Intel MPI Benchmarks

* [@spackbot] updating style on behalf of jack-morrison
2023-05-30 16:37:58 -05:00
Eric Berquist
9428749a3c
Update SST packages to 13.0.0 (#37467)
* add sst-{core,elements,macro} v13.0.0

* Add newest DUMPI versions and remove unavailable ones

* update maintainer lists

* sst-core: tracking and profiling flags

* sst-elements with Pin requires the Pin location

* sst-core: Zoltan integration was removed in version 12

* spack style fixes

* sst-core: ensure Python is in the sst{sim,info}.x rpaths

* sst-macro: update homepage and maintainers

* spack style --fix
2023-05-30 16:35:33 -05:00
Michael Kuhn
efdac68c28
julia: fix build for @1.8.4:1.8.5 (#37990)
julia@1.8.4:1.8.5 fails to build because it does not find libstdc++ (see https://github.com/JuliaLang/julia/issues/47987).
2023-05-30 13:49:15 -07:00
Carlos Bederián
5398c31e82
ucx: add 1.14.1 (#37991) 2023-05-30 13:46:39 -07:00
Thomas Madlener
188168c476
podio: Add 0.16.5 tag (#37994) 2023-05-30 13:39:15 -07:00
Michael Kuhn
4af84ac208
gobject-introspection: add 1.76.1 (#37995) 2023-05-30 13:37:53 -07:00
Manuela Kuhn
deb8b51098
py-dunamai: add 1.17.0 (#38003) 2023-05-30 15:34:15 -04:00
Manuela Kuhn
0d582b2ea9
py-duecredit: add 0.9.2 (#38002) 2023-05-30 15:33:54 -04:00
Manuela Kuhn
f88b01c34b
py-datalad-container: add 1.2.0 (#38000) 2023-05-30 15:28:34 -04:00
Manuela Kuhn
0533c6a1b8
py-datalad-metalad: add 0-4-17 and new dep py-datalad-deprecated (#37993)
* py-datalad-metalad: add 0-4-17 and new dep py-datalad-deprecated

* Fix style
2023-05-30 15:18:15 -04:00
Manuela Kuhn
f73d5c2b0e
py-cryptography: add 40.0.2 (#37925)
* py-cryptography: add 40.0.2

* Add pkgconfig dependency
2023-05-30 10:26:17 -05:00
Tamara Dahlgren
567d0ee455
tests/hdf5: convert to new stand-alone test process (#35732) 2023-05-29 16:56:17 +02:00
Tamara Dahlgren
577df6f498
sqlite: convert to new stand-alone test process (#37722) 2023-05-29 07:59:23 -04:00
Harmen Stoppels
8790efbcfe
Remove patchelf self-relocation (#33834) 2023-05-29 13:14:24 +02:00
Tamara Dahlgren
212b1edb6b
tests/biobambam2: convert to new stand-alone test process (#35696) 2023-05-29 12:54:38 +02:00
snehring
d85a27f317
sentieon-genomics: replacing square brackets in help (#37622) 2023-05-29 12:52:36 +02:00
Chris White
5622afbfd1
amgx: add v2.2.0 and v2.3.0 (#37567) 2023-05-29 12:42:36 +02:00
Carlos Bederián
f345038317
nwchem: fix non-fftw fftw-api providers (#37442) 2023-05-29 12:41:41 +02:00
Michael Kuhn
e43d4cfee0
glib: add 2.76.3 and 2.76.2, update build systems (#37226)
This also converts the package to the new way of handling multiple build
systems.

Co-authored-by: michaelkuhn <michaelkuhn@users.noreply.github.com>
2023-05-29 06:38:57 -04:00
Vanessasaurus
7070658e2a
Automated deployment to update package flux-core 2023-05-15 (#37684)
Co-authored-by: github-actions <github-actions@users.noreply.github.com>
2023-05-29 12:35:22 +02:00
dependabot[bot]
fc4b032fb4
build(deps): bump codecov/codecov-action from 3.1.3 to 3.1.4 (#37688)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 3.1.3 to 3.1.4.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](894ff025c7...eaaf4bedf3)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-05-29 12:34:34 +02:00
Vanessasaurus
8c97d8ad3f
add flux-security variant to flux-core (#37689)
This will build flux-security separately to have a flux-imp
that can be defined in a flux broker.toml. Note that the user
that wants a multi-user setup is recommended to create a view,
and then a system/broker.toml in flux config directory that
points to it.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
Co-authored-by: vsoch <vsoch@users.noreply.github.com>
2023-05-29 12:34:07 +02:00