Commit graph

2630 commits

Author SHA1 Message Date
Adam J. Stewart
eeded917cd Rename xpyb to py-xpyb (#2120) 2016-10-25 10:10:16 -07:00
Mayeul d'Avezac
1928d83259 Tells boost explictly about python libraries and headers (#2106)
* Tells boost explictly about libraries and headers

Ideally, bjam would determine the libraries and headers from the
executable. But it doesn't. This rigs a best guess for python libraries
and headers.

* Move glob import to top of file

* variable name change: alllibs --> all_libs

* Use dso suffix rather than hard-coded string

* Use only MAJOR.MINOR when setting up python in bjam
2016-10-25 08:10:52 -07:00
Massimiliano Culpo
b27e78cd78 spack setup : fixed regression after #1186 (#2117) 2016-10-25 07:53:11 -07:00
Denis Davydov
d7b624457f gmp: fix a bug (#2114) 2016-10-25 07:08:52 -07:00
Todd Gamblin
0f6a5cd385 Merge pull request #1186 from epfl-scitas/features/install_with_phases
do_install : allow for an arbitrary number of phases
2016-10-24 17:13:49 -07:00
Todd Gamblin
c1ad4bde28 Rename EditableMakefile to MakefilePackage 2016-10-24 16:41:20 -07:00
Barry Smith
453ad8df9d Get netlib-lapack to compile with Intel and add deprecated routines (#2103)
Funded-by: IDEAS
Project: IDEAS/xSDK
Time: .4 hours
2016-10-24 14:25:59 -07:00
Mayeul d'Avezac
509bbd7067 Adds new versions to eigen (#2105)
* Adds new versions to eigen

* Reorder versions from oldest to newest
2016-10-24 11:09:17 -07:00
alalazo
7bd735416d package.py : moved each specialized package to its own module file 2016-10-23 22:38:19 +02:00
alalazo
fa3f07c092 CMakePackage, AutotoolsPackage : added default behavior on check 2016-10-23 19:02:46 +02:00
alalazo
ebbbed166e Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase 2016-10-23 13:35:12 +02:00
Barry Smith
9d3d492214 mumps: Add support for Intel compiler and insure both lapack and blas… (#2076)
* mumps: Add support for Intel compiler and insure both lapack and blas libraries are passed to the examples

Likely it was not discoverged before that the examples require both lapack and blas libraries because it
was tested with Openblas which is one large library containing everything.
Funded-by: IDEAS
Project: IDEAS/xSDK
Time: .3 hours

* flake8 fix.
2016-10-22 15:57:44 -07:00
Joseph Ciurej
9f3a46c6c1 Add Package : OpenSceneGraph (#2075)
* Created the initial version of the 'OpenSceneGraph' package.

* Added 'zlib' as a dependency and linked it during the build step.

* Fixed a few minor PEP8 style violations in the 'OpenSceneGraph' package.

* Added cmake as a build dependency and improved the build procedure.

* Made a few important argument updates to improve package compatibility.

* Fixed up a few remaining style issues in the 'openscenegraph' package.

* Added a description for the 'openscenegraph' package.

* Fixed a bug that was causing some 'openscenegraph@3.2.3%gcc' installs to fail.

* Fixed a number of small issues with the 'openscenegraph' package.

* Removed a number of superfluous flags from the 'openscenegraph' install.
2016-10-22 15:14:29 -07:00
Jean-Paul Pelteret
7565f9dcdb Add new package "gource" and dependencies "glew, sdl, sdl-image". (#2084) 2016-10-22 14:28:59 -07:00
George Hartzell
cfbacdb41e Updated the texlive digest value (#2073)
The texlive tarball, install-tl-unx.tar.gz is unversioned and changes
periodically.  When it does, the digest needs to change too.  This does
that.
2016-10-21 16:57:42 -07:00
alalazo
482f60d1d3 packages : moved decorators into AutotoolsPackage and CMakePackage 2016-10-22 01:03:07 +02:00
Joseph Ciurej
6464d6682c Update Package : Qt (Add 'WebKit' Support) (#1455)
* Added the '+webkit' variant to the 'qt' package.

* Made 'qmake' an available executable to 'qt' depdendents.
2016-10-21 14:13:56 -07:00
Matthew LeGendre
9f36ae4e20 Extend concretization test to excercise bug in concretize's provider sorting 2016-10-21 11:57:57 -07:00
Adam J. Stewart
52158d9316 Add new Version property to handle joined version numbers (#2062)
* Add new version property to handle joined version numbers

* Add unit test for new joined property

* Add documentation on version.up_to() and version.joined
2016-10-21 07:49:36 -07:00
Adam J. Stewart
c513fd72fb Add latest version of Armadillo (#2061) 2016-10-21 07:39:48 -07:00
Massimiliano Culpo
aa86432ec6 patch directive : fixed retrieval from urls ( fixes #1584 ) (#2039)
* patch directive : fixed retrieval from urls fixes #1584

 - add support for 'gz' archives
 - fixed bugs with URL patches
 - updated nwchem

* patch directive : added checksum to UrlPatch

 - refactored classes in patch.py
 - updated nwchem

* patch directive : added caching
2016-10-21 07:32:52 -07:00
alalazo
213e3f0860 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase
Conflicts:
	lib/spack/spack/cmd/install.py
	lib/spack/spack/cmd/setup.py
2016-10-21 12:38:43 +02:00
Matthew LeGendre
8de143a994 Fixes needed to build gcc on Linux/ppc64le (#2057)
* Fixes needed to build gcc on Linux/ppc64le

* flake8 fix.
2016-10-19 23:29:59 -07:00
George Hartzell
027632cbac Fix cdd package definition, dotted is a property (#2054)
Things that accessed the cdd package, such as `spack info cdd run
tripped over a buglet in the *cdd* package, causing them to exit with
something like this:

```
Caused by:
TypeError: 'str' object is not callable
  File "/rss/spack/lib/spack/spack/repository.py", line 584, in get
    self._instances[key] = package_class(copy)
  File "/rss/spack/lib/spack/spack/package.py", line 398, in __init__
    f = fs.for_package_version(self, self.version)
  File "/rss/spack/lib/spack/spack/fetch_strategy.py", line 852, in for_package_version
    attrs['url'] = pkg.url_for_version(version)
  File "/rss/spack/var/spack/repos/builtin/packages/cdd/package.py", line 40, in url_for_version
    str(version.dotted()).replace('.', ''))
```

@tgamblin pointed out that `dotted` is a property, not a functin call
and that the parentheses are therefor inappropriate.

This deletes the parentheses.  `spack info cdd` now works for me.
2016-10-19 12:28:26 -07:00
George Hartzell
dbbef6ba23 Add package for htop (#2051)
Add package for htop, an interactive text-mode process viewer for
Unix systems.  Think top, with pretty colors and dyanmic bar graphs.

More info [here](https://github.com/hishamhm/htop).
2016-10-19 10:33:49 -07:00
Denis Davydov
0e59ade030 petsc: minor fixes... (#2036)
* petsc: require boost for :3.5 only

* petsc: turn off download for c2html and hwloc
2016-10-18 08:09:18 -07:00
Eric
306eea5e59 Support for bazel (#2023)
* Add package bazel

* Add support for bazel-based builds
2016-10-18 07:46:42 -07:00
Denis Davydov
4c2af4f888 superlu-dist: add 5.1.0 and 5.1.1 (#2038) 2016-10-18 07:45:48 -07:00
Denis Davydov
dd28f5b5eb mumps: add 5.0.2 (#2041) 2016-10-18 07:38:30 -07:00
Denis Davydov
5f20c43315 hypre: add 2.11.1 (#2040) 2016-10-18 07:38:15 -07:00
Jim Galarowicz
87adcfeea8 Update the Krell Institute products to use the latest features of spa… (#1984)
* Update the krell institute products to use the latest features of spack for building on cluster platforms.

* Address travis error messages and resubmit the pull request.

* Update the contents of openspeedshop package.py so it passes the flake8 tests.

* Fix flake8 error-whitespack issue in mrnet package.py file.

* Add updates based on spack reviewer feedback.

* More fixes based on comments from reviewers.  Switch using extend to using append, remove additional setting of PATH and LD_LIBRARY_PATH that should not be required due to RPATH.

* More review related changes.  Update MPIOption.append lines and take out xercesc references.

* Create a base options function for common openspeedshop base cmake options to reduce redundencies.
2016-10-17 01:18:30 -07:00
Pramod Kumbhar
b5e20018b5 fix download url for paraver (#2033)
* fix download url for paraver

* added note to remove older version
2016-10-17 01:17:01 -07:00
Pramod Kumbhar
e93c9060f5 fix sqlite download url (#2031) 2016-10-15 16:31:23 -07:00
Elizabeth Fischer
3dbde09747 Workaround for illegal package merging in py-matplotlib/py-basemap (#1964)
* Workaround for illegal package merging in py-matplotlib/py-basemap

# Conflicts:
#	var/spack/repos/builtin/packages/py-basemap/package.py

* flake8

* flake8

* Be conservative: only apply the namespace package fix for Python >= 3.5.2

* flake8

* Bug fix
2016-10-14 16:09:54 -07:00
Adam J. Stewart
fbe9142b7e Fix list_url for fish shell (#2022) 2016-10-14 12:46:59 -07:00
John Finigan
4be224238e py-macs2: New package (#2011)
* py-macs2: New package

* py-macs2: add py-numpy@1.6: dependency
2016-10-14 12:00:56 -07:00
Kelly Thompson
e359a7ca59 Add missing 'import os'. (#2012) 2016-10-14 12:00:43 -07:00
Denis Davydov
48f23aadbe dealii: remove extra test which are now mostly integrated in make test (#2013) 2016-10-14 09:49:31 -07:00
Denis Davydov
0d89e5e32b Package/petsc slepc new versions (#2019)
* petsc: add 3.7.4

* slepc: add 3.7.3
2016-10-14 08:25:22 -07:00
Elizabeth Fischer
b27f4e3aeb py-matplotlib: Add variants for optional dependencies. (#2008) 2016-10-12 14:55:38 -07:00
Elizabeth Fischer
67ef6df4db Made optional CGAL dependencies optional. (#2006)
* Made optional CGAL dependencies optional.

* cgal: Added note explaining that the CORE library is not the same as core CGAL functionality.

* Bug fix and flake8

* flake8
2016-10-12 13:02:06 -07:00
Ben Boeckel
b369be65d7 Mock up Xcode devdir to make Qt5 work on Mac OS X (#1832)
* build_environment: allow compilers to set up an environment

* clang: mock up a toolchain directory for xcode

Some projects ignore CC and CXX flags and instead use xcode to find the
toolchain. Clang on Apple should set up the environment properly.
Arguably, every compiler could do this on Apple, but let's see how this
works out just for AppleClang for now.

The Documentation directory is ~1.7G and the excluded platforms add up
to about 7G. Ignoring swift saves another 500M. The resulting Xcode.app
copy is in the 2G range.

* compiler: set member variables early

This is required so that later methods can query things such as the
version of the compiler.

* compiler: support finding the real path of the compiler

On Apple, the /usr/bin compilers are actually wrapping tools themselves
which query xcrun for the currently selected Xcode installation. Pierce
this veil and get the real, full path the to underlying compilers
instead.

* icu4c: install with rpath

On macOS, icu installs with a library ID of the library name. Enabling
rpath makes its ID its full installed path which lets Qt5 link against
it successfully.

* qt: no -no-gtkstyle flag on Qt5 on macOS
2016-10-12 09:58:12 -07:00
Todd Gamblin
488e1bab2c Make insecure option work with curl AND git. (#1786) 2016-10-11 23:13:40 -07:00
Elizabeth Fischer
a6f85f51d0 patchelf: Add version (#1540)
* patchelf: Add version

* flake8

* Removed unnecessary url_for_version() function.

* Restored old URL
2016-10-11 23:11:25 -07:00
Denis Davydov
025b914079 oce: fix for Sierra (#1934) 2016-10-11 23:10:51 -07:00
gmatteo
949766d92e Abinit: Added package(s) (#1995)
* First version of Abinit package

* Ignore *.swp files

* Add libxc, etsf_io packages

* AtomPaw package

* Make Abinit depend on mpi@2: and external version of libxc, netcdf, hdf5, etsf_io

* etsf_io: install Fortran modules in prefix.include

* Remove etsf_io from abinit requirements

* Add libxc2.2.1 (required by Abinit and atompaw)

* Cleanup

* Run make check

* Cleanup

* Use ld_flags instead of hard-coded libs, fix pep8, add copyright

* Put scalapack before lapackblas
2016-10-11 15:22:46 -07:00
Joseph Ciurej
37d125b890 Update Package : ExodusII (#1504)
* Added support for the 'maxdims' and 'maxvars' flags for 'NetCDF'.

* Added the '+mpi' variant and improved dependencies for 'exodusii'.
Improved the 'exodusii' package so that it's less reliant on patches.

* Added better type checking to variant values in the 'netcdf' package.

* Corrected the required CMake version for the 'exodusii' package.

* Fixed the dependencies of the '+mpi' variant of the 'exodusii' package.
2016-10-11 14:53:02 -07:00
Adam J. Stewart
6dc8bbcb3a Package all of Xorg/X11/XCB (#1740)
* Updates to Mesa and other Xorg packages

* Add packages for all Xorg Protocol extensions

* Add packages for first half of Xorg libraries

* Add packages for remaining Xorg libraries

* Add packages for all Xorg utilities

* Add packages for Xorg documentation tools

* Add build deps to Xorg protocol headers

* Add packages for XCB

* Add build deps to Xorg libraries

* Add build deps to Xorg utilities

* Add packages for Xorg fonts and font-related utilities

* Change font deptype from build to default

I wasn't sure which deptype was appropriate at first since none of
the packages are actually linked together. I initially chose the
build deptype for this reason. However, the font packages don't
install into their own prefix. They install into font-config. If
font-config is a build dependency, that means you can uninstall it
without uninstalling the font packages, which wouldn't make sense
since they install into font-config. So I switched them back to
the default deptype.

* Minor formatting changes to ncview

* Add half-way done xorg-server package

* Add packages for Xorg test suites, not yet tested!

* Add packages for Xorg data

* Add first quarter of Xorg apps

* Add more packages for Xorg apps

* Add dependencies to mesa

* Remove comments from mesa package

* Flake8

* Add more packages for Xorg apps

* Add more packages for Xorg apps

* Add more packages for Xorg apps

* Add more packages for Xorg apps

* Add more packages for Xorg apps

* Add package for Sublime Text

* Add packages for remaining Xorg apps

* Revisit testing packages, add missing dependencies

* Add dependencies, clean up FIXMEs
2016-10-11 09:42:20 -07:00
alalazo
c7a5dd36e2 qa : flake8 issues 2016-10-11 16:30:06 +02:00
alalazo
ab995df777 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases_rebase
Conflicts:
	lib/spack/spack/build_environment.py
	lib/spack/spack/cmd/install.py
	lib/spack/spack/cmd/setup.py
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/gmp/package.py
	var/spack/repos/builtin/packages/hdf5/package.py
2016-10-11 16:28:08 +02:00