BlasPP by ECP SLATE will fail to install by default
(`spack install blaspp`) because:
- the default BLAS installation in Spack is OpenBLAS
- BlasPP conflicts with `threads=none` for all recent OpenBLAS releases
OpenBLAS introduced a threadsafe compile option
with 0.3.7+ aka `USE_LOCKING`:
```
61 # If you want to build a single-threaded OpenBLAS, but expect to call this
62 # from several concurrent threads in some other program, comment this in for
63 # thread safety. (This is done automatically for USE_THREAD=1 , and should not
64 # be necessary when USE_OPENMP=1)
65 # USE_LOCKING = 1
```
According to tests, with `spack install --test root blaspp`,
this exactly addresses the issues in BlasPP tests.
It also seems to be a good option to set by default for OpenBLAS and
users that do not need this safety net can always disable it.
Solve issues with newer OpenBLAS by requiring
`+locking` over none-default threading options.
* Improve error message for inconsistencies in package.py
Sometimes directives refer to variants that do not exist.
Make it such that:
1. The name of the variant
2. The name of the package which is supposed to have
such variant
3. The name of the package making this assumption
are all printed in the error message for easier debugging.
* Add unit tests
* Also removed LBANN CUDA CMake flags that are set by the
version of Hydrogen that is compiled against.
* Updated recipes to use HWLOC 2.3 with ROCm to enable
topology awareness.
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
* genesis: New package.
* fujitsu-ssl2: fix unit test error
* genesis: Fix for comments and add test method
* genesis: Fix for comments
* genesis: Fix for comments
* libblastrampoline: new package
* Apply suggestions from code review
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
It turns out there are certain cases where having Open MPI use an external hwloc messes up other
applications that also rely on hwloc, but a different version.
Signed-off-by: Howard Pritchard <howardp@lanl.gov>
* VTK-m: No `pic` variant
A leftover conflict between `shared` and `pic` variants, the
latter is not part of the package anymore, leads to a solver
error with clingo.
This removes the outdated conflict section.
* VTK-m: Kokkos AMD GPU variant changed
Set the minimun C++ standard for LBANN, Hydrogen, and DiHydrogen to
C++17. The minumim C++ standard for Aluminum is C++14. Add new
versions for Aluminum, Hydrogen, and DiHydrogen. Added support for
high performance linkers in LBANN recipe (gold and lld). Added
variants to LBANN for enabling embedded Python support independently
from the Python front end.
* py-fenics-instant: new package for legacy fenics 2016 and 2017 versions
* Update var/spack/repos/builtin/packages/py-fenics-instant/package.py
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
Keep spack.store.store and spack.store.db consistent in unit tests
* Remove calls to monkeypatch for spack.store.store and spack.store.db:
tests that used these called one or the other, which lead to
inconsistencies (the tests passed regardless but were fragile as a
result)
* Fixtures making use of monkeypatch with mock_store now use the
updated use_store function, which sets store.store and store.db
consistently
* subprocess_context.TestState now transfers the serializes and
restores spack.store.store (without the monkeypatch changes this
would have created inconsistencies)
The dependencies needed a little clean up as several dependencies are
only needed for the +X variant. This PR consolidates all of the
dependencies that actually require +X and explicitly disables them when
~X to prevent accidentally picking up system libraries.
- modified the description of the +X variant
- arranges dependencies to group them
- added missing dependency on xz
- removed unneeded dependencies
- freetype
- glib
- set dependencies when +X
- cairo
- jpeg
- libpng
- libtiff
- tcl/tk
- R uses tcl/tk together, so only tk needs to be depended on, and only
when +X
- moved tcl/tk resources to with/without-x test
- added explicit with/without settings for
- cairo
- jpeglib
- libpng
- libtiff
- tcltk
* py-typing: new version, avoid issues with newer versions of python
https://pypi.org/project/typing/
"For package maintainers, it is preferred to use
typing;python_version<"3.5" if your package requires it to support
earlier Python versions."
* update conflict version / more message detail
* change the depends_on, leave a comment suggesting correct usage
The actual, documented minimum version of the cfitsio dependency,
v3.181, is now neither available for (easy) download from NASA, nor as
a Spack package. No upper bound on version number exists (at this time).
Add `manual_download = True` to packages that need to do manual
downloads but do not have the `manual_download attribute set. This
provides a message when installing these packages rather than a generic
fetch error.
Add versions 2020.12 and 2021.01. The viewer and trace viewer are now
integrated into a single program and one tar ball. Now available on
arm/aarch64 and now uses Java 11.
Update some things in hpctoolkit to prepare for a 2021.02.x release:
1. allow binutils to be built with +nls.
2. require libmonitor to be built with +dlopen.
3. allow rocm in more than just develop branch.
4. remove some conflicting setenv's in hpctoolkit module.
* add new flag when compiling mumps with %gcc@10.
* Fix style
* Try to fix formatting
* Use flag_handler approach suggested by @michaelkuhn
in the PR review.
* Delete former approach
* Another style issue
* Add another space
* More fixes
We still need mesa18 for some of our builds.
Those builds require python@2, normal mesa only works with
python@3.
* Remove the deprecation tag
* Add myself as a maintainer: I volunteer to help with this
package for the time being.
* There is only one version, no need to prefer it.
* fixed install with ver 3 and python 3.0
* replaced @3 with @2.999
* [py-pyspark] added version requirements for py-py4j
* [py-pyspark] all versions require at least version 2.7 of python
* [py-pyspark] fixed comma syntax
Co-authored-by: Sid Pendelberry <sid@rit.edu>
