Adam J. Stewart
82e3380049
Add latest version and missing dependencies of MySQL ( #10904 )
...
* Add latest version and missing dependencies of MySQL
* m4 only needed on solaris
2019-03-15 14:01:54 -05:00
Christoph Junghans
4baf3d9d02
py-espressopp: add v2.0.2 ( #10909 )
2019-03-15 12:59:23 -05:00
Matthias Diener
dd09ab697b
cmake: add version 3.14.0 ( #10908 )
2019-03-15 11:49:59 -05:00
Adam J. Stewart
cba5a8058e
Add ladot package ( #10905 )
2019-03-15 01:13:25 -05:00
Adam J. Stewart
4e6285a19b
Ensure that every package has a description ( #10896 )
2019-03-14 20:49:07 -05:00
Jordan Ogas
1d73868333
charliecloud: added version 0.9.8 ( #10900 )
2019-03-14 20:36:53 +01:00
Chris Green
6a9f02c96f
cppunit: support cxxstd. ( #10888 )
2019-03-14 16:17:31 +01:00
Elizabeth Fischer
f15f3076db
libxaw: added version 1.0.12 ( #10591 )
2019-03-14 12:55:56 +01:00
Levi Baber
a71664a42d
py-pybigwig: needs curl at link time ( #10892 )
2019-03-14 11:07:50 +01:00
Cody Balos
4025ec9508
sundials: add new version (4.1.0) ( #10890 )
2019-03-14 11:00:22 +01:00
Nichols A. Romero
ec5bf38245
QMCPACK More CUDA Fixes ( #10864 )
...
* Throw InstallError if more than one GPU architecture is passed to cuda_arch. Previous cuda_arch test was not actually working because comparison with none string was on the cuda_arch list instead of the first entry of the list.
* Removing redundant cuda_arch statement.
2019-03-13 16:03:28 -05:00
Eric Martin
2bca687605
py-treehash: Create new package ( #10872 )
2019-03-13 16:03:09 -05:00
Levi Baber
39c40ee3fc
revbayes: new version ( #10873 )
2019-03-13 21:36:13 +01:00
Michael Kuhn
d3365e4356
libplist, libusbmuxd: Fix pkgconfig dependency ( #10876 )
...
pkgconfig is the correct virtual provider.
2019-03-13 14:55:23 -05:00
Michael Kuhn
db79317eb9
cubelib, cubew: Add missing pkgconfig dependency ( #10875 )
2019-03-13 20:15:02 +01:00
Michael Kuhn
3019068e0c
mpich: Add patch to fix node list parsing ( #10870 )
...
mpich@3.3 introduced a new regex-based function for node list parsing
that does not recognize hostnames without a dash properly.
2019-03-13 10:58:05 -07:00
Eric Martin
358226b946
py-biomine: new package ( #10868 )
2019-03-13 15:17:06 +01:00
Eric Martin
6a87b6215f
help2man: Add version 1.47.8 and perl runtime dependency ( #10862 )
2019-03-13 15:11:45 +01:00
Eric Martin
7d50567423
py-advancedhtmlparser: new package ( #10867 )
2019-03-13 15:06:01 +01:00
Eric Martin
ffbc4f199e
fqtrim: Create new package ( #10861 )
2019-03-12 21:30:30 -05:00
David Hows
c629a6f780
Fix mysqldb1 ( #9978 )
...
* Update package.py
* Add MYSQL Package file
* Fixes for linter
2019-03-12 20:57:29 -05:00
Elizabeth Fischer
82e9c01b5c
New package: py-mysql-connector ( #10327 )
...
* New package: py-mysql-connector
* Fixed docstring
* 1. Determined that py-setuptools was not needed at all, so removed.
2. Added py-protobuf. Docs seem to imply that only C protobuf library is required; however, the Python setup.py says differently, and some Python code seems to reference protobuf too. I don't know why this worked for me, but it looks like including py-protobuf is the right thing to do.
* Applied solution detailed in:
https://github.com/mysql/mysql-connector-python/pull/9
Uncommenting this patch will make `error: option --single-version-externally-managed not recognized` reappear.
* Clean up / reorder lines
* flake8
2019-03-12 20:52:43 -05:00
Eric Martin
3d7164c13f
varscan: set VARSCAN_HOME variable to jar file location ( #10744 )
2019-03-12 20:29:48 -05:00
Eric Martin
0ebd81bd15
py-pytables: Add hdf5 1.10.x support for versions above 3.4.0 ( #10746 )
2019-03-12 20:29:24 -05:00
David Poliakoff
d5c3ce790f
Update caliper package ( #10750 )
...
* Updating Caliper package with a shared lib option
* Tightened version bounds on Caliper package
* Removed testing. Loosened version constraints
* Add Caliper 2.0.1, cleanup dependency specs
2019-03-12 20:28:13 -05:00
Rob Latham
da28b592fc
"Werror" too strict for recent compilers ( #10802 )
...
rapidjson gives warnings with gcc-7.3 and branch fall through
2019-03-12 20:10:51 -05:00
Michael Kuhn
65f37746af
qt: Use more system dependencies and fix build with new gcc versions ( #10817 )
...
qt currently falls back to bundled versions of sqlite, harfbuzz, pcre,
double-conversion and xcb. This adds the appropriate dependencies and
configure arguments. A new variant adds multibyte support to pcre and
pcre2, which is required by qt.
Additionally, newer versions of gcc (starting with @8.3.0) cause build
failures. This adds a patch to fix the problem.
The changes have been tested with all versions of qt currently available
in Spack. 5.2 and 5.3 do not build for reasons that seem to be unrelated
to these changes, though.
2019-03-12 20:04:11 -05:00
健美猞猁
a79230c832
casacore does not support fftw+mpi . ( #10839 )
2019-03-12 19:59:48 -05:00
健美猞猁
d32a342fc6
Aoflagger: a new package. ( #10840 )
...
* A new package: aoflagger.
* aoflagger does not support boost>1.66.0 .
* Add fftw~mpi dependency.
* flake8.
* Flake8.
* Update package heder.
* md5 -> sha256.
2019-03-12 19:59:24 -05:00
Axel Huebl
fd6d3f6b8c
openPMD-api: shared variant ( #10847 )
...
Add a variant to control shared/static builds (one at a time) and
make shared the default.
2019-03-12 19:58:44 -05:00
Alberto Chiusole
46fb6ed5b6
Revert to manual flag enabling, due to RegCM bug in configure. ( #10863 )
...
The configure of RegCM treats --disable-FEATURE as --enable-FEATURE,
so we cannot use enable_or_disable.
2019-03-12 19:48:45 -05:00
Owen Solberg
dc5b16a8e9
added checksum for 20190222 release of gnu parallel ( #10865 )
2019-03-12 19:40:29 -05:00
Eric Martin
50193229ea
py-llvmlite: Add versions 0.26.0 and 0.27.1 ( #10866 )
2019-03-12 19:40:01 -05:00
Mark W. Krentel
3ed6e78338
New package: ibm-java ( #10777 )
...
* Add binary package of the IBM Java SDK for big and little-endian
powerpc (power7, 8 and 9). The jdk and openjdk packages only install
on x86_64.
* Add ibm-java as a java provider
* The jdk and openjdk packages only install on x86_64. Add conflicts
for ppc64 and ppc64le to jdk and openjdk.
2019-03-12 18:05:47 -05:00
wspear
e1e5eb29d2
Elfutils package: add m4 dependency and version 0.176 ( #10834 )
...
* Elfutils requires m4 to build
* Add version 0.176
2019-03-12 17:35:59 -05:00
Robert Pavel
1450fe72fa
New package: Draco ( #10844 )
2019-03-11 20:57:00 -05:00
Matthias Diener
5e68af5a78
scons package: add missing dependency to py-setuptools ( #10856 )
2019-03-11 20:30:12 -05:00
Jiawei Zhuang
74b33e9f82
OpenMPI: v4.0.0 + Slurm installation error ( #10853 )
...
shmemrun and oshrun do not exist in OpenMPI v4.0.0
(ref: https://www.open-mpi.org/doc/v4.0/ )
The Spack OpenMPI package was failing the install by trying to
remove them. This guards the removal of several scripts when
using the Slurm scheduler to handle the case where they don't exist.
2019-03-11 20:18:50 -05:00
Michael Kuhn
1e6b13d335
Fix URLs for VI-HPS projects ( #10821 )
...
URLs for the opari2, otf2, and scorep packages have changed (although
the checksums are the same)
2019-03-11 20:12:44 -05:00
Stas Sergienko
9ffd508d7c
mpich: add psm2 fabric support ( #10814 )
...
psm2 is only supported for versions 2.2 and up, so a conflict is
added for earlier versions
2019-03-11 20:10:02 -05:00
健美猞猁
888bb76758
New package: cotter ( #10838 )
2019-03-11 19:46:40 -05:00
Eric Martin
1d51cdf824
STAR: Add versions 2.7.0d and 2.7.0e ( #10831 )
2019-03-11 19:44:54 -05:00
Eric Martin
23b73ca982
py-chardet: Add version 3.0.2 ( #10827 )
2019-03-11 19:44:30 -05:00
Eric Martin
2e47b45d9f
py-urllib3: Add version 1.21.1 ( #10826 )
2019-03-11 19:44:07 -05:00
Greg Sjaardema
204063e21a
cgns package: add version 3.4.0 and update hdf5 dependency ( #10803 )
...
* Add version 3.4.0
* Update checksums for older versions to sha256
* Require hdf5~mpi when building with ~mpi
2019-03-11 19:43:16 -05:00
Eric Martin
dc0b6a0613
samtools package: Add version 1.5 and htslib 1.5 dependency ( #10825 )
2019-03-11 19:29:29 -05:00
Alberto Chiusole
2b591653fa
hdf5 package: add version 1.10.5 ( #10794 )
2019-03-11 15:15:03 -05:00
Justin Stanley
46466381b8
py-crossmap: new package at 0.3.3 ( #10854 )
2019-03-11 15:13:02 -05:00
Michael Kuhn
9425075a23
flex: Apply 2.6.4 patch regardless of gcc version ( #10841 )
...
It seems that this is actually a glibc problem and while 2.6.4 builds
without the patch on newer versions of gcc (@8:), it still sometimes
segfaults (as observed during the doxygen build).
2019-03-11 15:12:28 -05:00
Ce Qin
43525d3445
mpich: remove libpciaccess dependency for MacOS ( #10795 )
2019-03-11 15:06:49 -05:00
Gregory Lee
1fd01af773
added intel 19.0.3 packages ( #10835 )
...
* added intel 19.0.3 packages
* added intel 19.0.3 packages
2019-03-11 07:03:24 -07:00
Chris Green
1931bc8b40
Add 2019.{3,4} and patches for pedantic warnings. ( #10836 )
2019-03-11 09:03:19 -05:00
Chris Green
7e22fdfa21
boost: patch for problem with warnings for 1.69.0. ( #10820 )
2019-03-11 09:02:50 -05:00
Eric Martin
43b45f4140
breseq package: Add version 0.33.2 and zlib dependency ( #10747 )
...
For zlib, also update the `CFLAGS`/`LDFLAGS`
2019-03-08 20:57:00 -06:00
Denis Davydov
c81e68030a
intel: add 2019.3 ( #10843 )
2019-03-08 14:50:58 -08:00
Christoph Junghans
0d07dea2eb
snap: overwrite flags ( #10832 )
2019-03-07 14:53:04 -07:00
Christoph Junghans
c11e745421
cloverleaf3d: overwrite flags ( #10830 )
2019-03-07 14:08:52 -07:00
Christoph Junghans
2f7589adc4
cloverleaf: overwrite flags ( #10829 )
2019-03-07 14:08:36 -07:00
Levi Baber
016945f67a
autofact: fix dependency ( #10818 )
2019-03-07 13:51:40 -06:00
Eric Martin
e750c5af66
trimmomatic package: restrict java dependency to version 8 ( #10741 )
2019-03-07 13:49:57 -06:00
Tristan Carel
dd6e91fcb6
Nix package: update dependencies ( #10646 )
...
* Add 'fiber' as a default library for boost
* Add autoconf/automake etc. dependencies to libseccomp package
* New package: brotli
* New package: editline
* Add brotli, editline, boost dependencies to Nix
2019-03-07 13:32:55 -06:00
Matthias Maiterth
23822e9717
GEOPM package: add version 1.0.0-rc2 ( #10737 )
2019-03-07 13:18:05 -06:00
Eric Martin
d072a1e0e3
py-sip package: Add version 4.19.3 ( #10742 )
2019-03-07 13:16:54 -06:00
Eric Martin
435db9d1a5
seqtk package: Add version 1.3 ( #10743 )
2019-03-07 13:16:20 -06:00
Michael Kuhn
3fb75e1206
flex package: patch for building 2.6.4 with gcc 7 ( #10754 )
...
Remove 2.6.3 as preferred version (but keep it available for
building). The latest version (currently 2.6.4) is now preferred
(according to Spack's defaults).
2019-03-07 13:15:47 -06:00
Eric Martin
49e307398b
py-certifi: Add version 2017.4.17 ( #10828 )
2019-03-07 13:09:26 -06:00
Michael Kuhn
2fed84058d
py-flake8: Add missing dependencies for @3.7.7 ( #10796 )
...
* Update dependencies for py-flake8 when building version 3.7.7
* Add FIXME comment for an example dependency constraint which causes
concretization to hang
* Add py-entrypoints version 0.3
* Add py-pycodestyle version 2.5.0
2019-03-07 12:50:30 -06:00
健美猞猁
42633e34ab
CMake package: update libuv dependency constraints ( #10824 )
...
* Add libuv version 1.10.0
* CMake versions before 3.12.0 do not build with libuv version
1.25.0, so a constraint is added to build earlier versions of
CMake with libuv version 1.10.x
2019-03-07 12:42:24 -06:00
prs513rosewood
32bbffc869
thrust: add versions 1.9.0-1.9.4 ( #10823 )
2019-03-07 14:36:59 +01:00
Eric Martin
efdeb860d1
transdecoder package: Add version 5.5.0 and fix up url and installation paths ( #10745 )
...
* Add version 5.5.0 and fix installation locations
* URL format has changed as of version 5.5.0
* Update paths created for installation
2019-03-06 20:58:50 -06:00
Eric Martin
45856c3660
bsseeker2 package: Add versions 2.1.8 and 2.1.5 ( #10748 )
...
As of version 2.1.8, the url format changed, so also update that
2019-03-06 20:55:06 -06:00
Jeongseok Lee
0e22a94f81
Eigen package: support Spack-external builds using Eigen ( #10751 )
...
Update CPATH in setup_environment for Eigen, so that the
Spack-generated module for Eigen will help builds outside of Spack
use the appropriate include prefix for Eigen headers
(<install_prefix>/include/eigen3/ rather than <install_prefix>/include/)
Note that this only updates the run-time environment, rather than the
build-time environment, so Spack builds depending on Eigen that use
pkgconfig will not be confused by the presence of the Eigen include
directory in CPATH.
2019-03-06 20:48:38 -06:00
Matthias Diener
836f40e30f
scons: add version 3.0.4, cleanup URLs ( #10806 )
2019-03-06 20:39:39 -06:00
HAOCHENG LIU
a3a8ed7234
vtk-m package: turn off mpi support by default ( #10755 )
2019-03-06 20:34:49 -06:00
健美猞猁
9d880b8838
New package: dysco ( #10767 )
2019-03-06 20:25:06 -06:00
Greg Sjaardema
c19df8be5d
NetCDF package: update constraints on hdf5 mpi support ( #10788 )
...
Update NetCDF to require building hdf5 without mpi when NetCDF itself
is built without mpi support.
2019-03-06 20:20:16 -06:00
Satish Balay
35daaa440f
omega-h: add version 9.22.2 and update gcc 8 conflict ( #10776 )
...
* Versions before 9.22.2 compiler with gcc 8.3 or later
* Added version 9.22.2, which compiles with all gcc 8.x versions
(including those before 8.3)
2019-03-06 20:10:47 -06:00
Ryan S. Elliott
39467e4d67
Update kim-api package and add openkim-models-v2 ( #10780 )
...
* Replace kim-api package with kim-api-v2, which has different
versions and removes the 'cmake_args' method
* Add openkim-models-v2 as an extension package
2019-03-06 19:23:05 -06:00
Mark W. Krentel
edecdc3ace
libelf: move url to fossies.org ( #10815 )
...
* libelf: move url to fossies.org
Libelf is no longer maintained and the original mr511.de web site no
longer exists. The final release, 0.8.13 from Nov 2009 is still
archived at fossies.org.
Fixes #10757 .
* Change the homepage to the FSF entry.
2019-03-06 11:42:44 -08:00
Gregory Lee
10b0251af0
added python 2.7.16 ( #10805 )
2019-03-06 11:05:32 -08:00
Gregory Lee
86a1230a60
build fixes for util-linux ( #10811 )
2019-03-06 11:04:53 -08:00
Cameron Stanavige
9f734e0cfd
unifycr: dependency changes and new version ( #10722 )
...
New release of UnifyCR. Remove unsupported pre-1.0 versions
UnifyCR has had a few dependency changes to make the backend more
efficient. A new pre-release version has been released as well to
mark these changes. Prior versions are no longer supported.
2019-03-06 10:56:20 -08:00
Owen Solberg
ff7cd40ca1
update package rsem ( #10813 )
2019-03-06 14:57:54 +01:00
Isaac Whitfield
1605368148
libusbmuxd: new package ( #10726 )
2019-03-06 10:10:02 +01:00
健美猞猁
c5573e660c
intel-parallel-studio package: add version cluster.2019.2 ( #10782 )
2019-03-05 18:08:00 -06:00
健美猞猁
40d66e34d3
New package: pal ( #10766 )
2019-03-05 17:41:54 -06:00
健美猞猁
063f5b63da
New package: erfa ( #10763 )
2019-03-05 17:40:39 -06:00
Greg Sjaardema
4c493b065c
NetCDF package: add version 4.6.3 and update naming ( #10786 )
...
* Add NetCDF version 4.6.3
* Naming scheme for artifacts >= 4.6.2 has changed. Add a
url_for_version function to generate the appropriate URLs
2019-03-05 17:33:47 -06:00
clellsolomon
b72715ed7c
Add fzf utility package ( #10778 )
...
* Add fzf utility package
* Fix "style checks" errors
- var/spack/repos/builtin/packages/fzf/package.py:32:
[E226] missing whitespace around arithmetic operator
2019-03-05 17:17:48 -06:00
Michael Kuhn
5758e49c80
gcc package: Add 8.3.0 ( #10772 )
2019-03-05 17:15:57 -06:00
Gregory Lee
7bd8689f06
openss package: allow all 2.7.x versions ( #10807 )
...
Originally the version constraint range had an upper bound of 2.7.15
This allows all 2.7.x versions
2019-03-05 17:14:32 -06:00
Alberto Chiusole
63e172d2ac
RegCM: intel FC 'hint', 4.7.0 intel warning, fcflags, fix extensions. ( #10797 )
...
This should fix and improve #9934 , which was messed up by a fetch from develop
2019-03-05 21:30:53 +01:00
Gregory Lee
bad485a221
various package version updates and build fixes ( #10775 )
...
* various package version updates and build fixes
2019-03-05 11:59:47 -08:00
Matthias Diener
c939e36ed9
cantera: make sundials dependency optional ( #10764 )
2019-03-05 19:58:00 +01:00
Michael Kuhn
c717f56359
ncl: Add 6.6.2 ( #10800 )
2019-03-05 17:13:51 +01:00
Michael Kuhn
21fb7dadb3
openssl: Add 1.1.1b, 1.1.0j and 1.0.2r ( #10779 )
2019-03-05 16:26:18 +01:00
Matthias Diener
9ba4d4e2af
git-lfs: add version 2.7.1 ( #10770 )
2019-03-05 16:25:20 +01:00
Greg Sjaardema
d580d2a033
seacas: Update NetCDF version requirement ( #10787 )
...
Modified NetCDF requirement to allow NetCDF-4.6.2 and subsequent versions.
2019-03-05 14:05:52 +01:00
Justin Stanley
f19a214a19
libbeagle: add 3.1.2 ( #10789 )
2019-03-05 14:02:52 +01:00
Peter Scheibel
af4a36c4d9
Header subdirectories for Python and Eigen ( #10773 )
...
Fixes #10769
This updates the .headers property to include header subdirectories
for Python and Eigen (as is recommended by these packages).
#10623 updated the default behavior of .headers.directories to
exclude subdirectories (since this can cause clashes with system
headers). This broke some packages which depended on the old behavior
of .headers.directories: for example if you had
<package-prefix>/include/subdir/ex1.h, .headers.directories would
include <package-prefix>/include/subdir.
2019-03-04 12:36:51 -06:00
Brian Van Essen
0ce1500376
Package Updates for ECP CANDLE Supervisor ( #10760 )
...
* Add EQ-R package
* Add Fansi, Pillar, UTF8 (R) packages
* Add new versions for py-mdanalysis, r-cli, r-dplyr, r-pkgconfig,
r-rlang, r-tibble, stc, and turbine packages
* Add hdf5 support for turbine
* Specify configure directory for stc package
2019-03-01 14:46:13 -06:00
Justin Stanley
c8557ba7d8
blast2go: new package at 5.2.5 ( #10725 )
...
* blast2go: new package at 5.2.5
* blast2go: remove redundant url
2019-03-01 12:36:00 -06:00
Matthias Diener
ee5e5ce3c6
new package: intel-pin ( #10546 )
2019-03-01 12:29:01 -06:00
Justin Stanley
1a8161a982
r-bfastspatial: new package at 0.6.2 ( #10734 )
2019-03-01 10:18:14 -06:00
Justin Stanley
cbc6a2070a
r-bfast: new package at 1.5.7 ( #10733 )
2019-03-01 10:17:37 -06:00
Justin Stanley
94357a274c
bedops: avoid static linking with glibc ( #10456 )
2019-03-01 10:17:01 -06:00
Justin Stanley
165d8da0c2
blast-legacy: new package at 2.2.26 ( #10610 )
...
* blast-legacy: new package at 2.2.26
* blast-legacy: compile from source
* blast-legacy: add missing os.symlink import
* blast-legacy: fix build script interpreter
2019-03-01 10:14:37 -06:00
Justin Stanley
f9947333ca
bridger: new package at 2014-12-01 ( #10611 )
2019-03-01 10:09:23 -06:00
Justin Stanley
c4aba6a204
r-spatial: new package at 7.3-11 ( #10728 )
2019-03-01 09:57:59 -06:00
Justin Stanley
16af5f31d9
r-nortest: new package at 1.0-4 ( #10729 )
2019-03-01 09:55:30 -06:00
Justin Stanley
4f1044a072
r-xts: add 0.11-2 ( #10730 )
2019-03-01 09:54:26 -06:00
Justin Stanley
104a8a1422
r-gdalutils: new package at 2.0.1.14 ( #10731 )
2019-03-01 09:53:30 -06:00
Justin Stanley
0766e7fbbb
r-rgdal: add 1.3-9 ( #10732 )
2019-03-01 09:52:07 -06:00
Justin Stanley
89f59f7ab0
hyphy: new package at 2.3.14 ( #10759 )
2019-03-01 09:31:46 -06:00
Jiawei Zhuang
433cc4a972
Fix sha256 sum for IOR ( #10765 )
2019-03-01 09:59:36 +01:00
Sajid Ali
6d20e938da
petsc: add +knl variant
2019-02-28 11:07:04 -06:00
Satish Balay
f8da8dbd0e
Trilinos: add release 12.14.1 ( #10740 )
...
xsdk: switch from 12.14.0-rc1 to 12.14.1
2019-02-28 11:05:05 -06:00
Eric Martin
4e80977506
py-tetoolkit: Add version 2.0.3 ( #10749 )
2019-02-28 12:59:30 +01:00
Owen Solberg
fac2dbda07
git-lfs: patch Makefile for v2.7.0 ( #10720 )
...
Fixes #10702
Same fix merged upstream in git-lfs/git-lfs#3545 -- it may appear
in future release v2.7.2 according to package maintainer.
2019-02-27 16:02:25 -06:00
Justin Stanley
2f4f828b45
wtdbg2: new package ( #10639 )
...
* wtdbg2: new package at 2.3
* wtdbg2: flake8 fix
2019-02-27 13:27:45 -06:00
Michael Kuhn
b1a04b7699
mpich: Improve package ( #10643 )
...
- Add missing pkg-config, libpciaccess and libxml2 dependencies
- Add slurm variant for nodelist parsing
- Add missing configure flag for libfabric
- Unset F90 and F90FLAGS
- Allow selecting different PMI interfaces
2019-02-27 13:13:44 -06:00
Paschalis Korosoglou
ab499a958d
otf2 package: fix download URL ( #10735 )
2019-02-27 12:47:56 -06:00
Gregory Lee
d60106a3f6
Add newer versions for 51 Python packages ( #10738 )
2019-02-27 12:45:28 -06:00
Massimiliano Culpo
7eec038690
Update environment-modules package ( #10717 )
...
The environment modules package has been updated to include
versions up to 4.0.0. The url of the package and the homepage
have been updated accordingly.
The `spack bootstrap` command now builds version 3.2.10 of
the environment-modules package, and will do until #10708
is fixed.
2019-02-27 14:00:46 +01:00
Isaac Whitfield
5efff5d2fc
new package: libusb ( #10682 )
2019-02-26 20:52:47 -06:00
Isaac Whitfield
938939b7e4
new package: libtasn1 ( #10681 )
2019-02-26 20:52:04 -06:00
Nichols A. Romero
d9b7c1faea
QMCPACK package: cuda/hdf5 fixes ( #10701 )
...
* Make use of new QE multi-valued HDF5 variant interface
* Remove explicit CUDA dependency (which is handled by inheriting
from CudaPackage)
* Update cuda_arch unset variant check
2019-02-26 20:50:32 -06:00
Satish Balay
c11f598e0b
petsc: add version 3.10.4 ( #10724 )
2019-02-26 20:41:33 -06:00
Justin Stanley
cbecf9f555
new package: phred ( #10700 )
...
Part of the software collection introduced in #10529 . Developers must
be contacted via email to receive the source code.
2019-02-26 19:14:58 -06:00
Isaac Whitfield
fbdbed1180
new package: libplist ( #10680 )
...
Dependency of Google's Flutter toolchain.
2019-02-26 19:12:41 -06:00
Justin Stanley
df4b77f120
libbeagle package: add cuda support ( #10650 )
...
libbeagle compiles against CUDA by default but no there is no mention
of it in the package recipe. This PR adds explicit cuda paths and
variants, and fixes the target architecture as well (for those who
don't have compute_13)
2019-02-26 18:50:08 -06:00
Michael Kuhn
0adf1b5405
vampirtrace: patch for new mpich and openmpi versions ( #10665 )
2019-02-26 18:48:14 -06:00
Phil Tooley
018ae371d6
new package: routino ( #10679 )
2019-02-26 18:41:44 -06:00
Janne Blomqvist
312122f169
Don't try to build TARGET=PILEDRIVER on aarch64
...
Piledriver is a codename for an AMD x86-64 processor, it can't
possibly make sense to compile for that if the architecture is
aarch64.
2019-02-26 18:40:39 -06:00
Neil Flood
2831184e41
kealib package: add version 1.4.11 ( #10706 )
2019-02-26 18:39:27 -06:00
Daryl W. Grunau
ecd98d1953
eospac package: add version 6.4.0 ( #10718 )
2019-02-26 18:38:52 -06:00
Justin Stanley
ba2ed96513
beast2 package: add version 2.5.2 ( #10723 )
2019-02-26 18:38:21 -06:00
Nichols A. Romero
5aa6cbf437
Quantum ESPRESSO package: Serial HDF5 Bug Fix ( #10689 )
...
Serial HDF5 in serial QE only works in develop version. This adds
a conflict to the QE package to prevent Spack from trying to build
specs which don't satisfy this constraint.
2019-02-26 18:36:50 -06:00
Massimiliano Culpo
42386dbe94
Use Package.headers for -I options ( #10623 )
...
This restores the use of Package.headers when computing -I options
for building a package that was added in #8136 and reverted in
#10604 . #8136 used utility logic that located all header files in
an installation prefix, and calculated the -I options as the
immediate roots containing those header files.
In some cases, for a package containing a directory structure like
prefix/
include/
ex1.h
subdir/
ex2.h
dependents may expect to include ex2.h relative to 'include', and
adding 'prefix/include/subdir' as a -I was causing errors,
in particular if ex2.h has the same name as a system header.
This updates header utility logic to by default return the base
"include" directory when it exists, rather than subdirectories.
It also makes it possible for package implementers to override
Package.headers to return the subdirectory when it is required
(for example with libxml2).
2019-02-26 12:42:30 -06:00
Justin Stanley
ad25e7f3b0
r-vfs: new package at 1.0.2 ( #10697 )
2019-02-26 12:21:12 -06:00
Justin Stanley
68318ab076
r-nleqslv: new package at 3.3.2 ( #10696 )
2019-02-26 12:19:48 -06:00
Daniel Topa
c832479c65
Add libhio v1.4.1.3, 1.4.1.1 ( #10699 )
...
- Switch all libhio tarball listings to sha256 checksums
- Correct typo in alert message in /lib/spack/spack/util/module_cmd.py: fucntion -> function
https://github.com/hpc/libhio/releases
Released 2019-02-01
Verification builds on LANL Darwin:
**Intel Xeon**
Architecture: x86_64
CPU op-mode(s): 32-bit, 64-bit
Byte Order: Little Endian
CPU(s): 40
On-line CPU(s) list: 0-39
Thread(s) per core: 2
Core(s) per socket: 10
Socket(s): 2
NUMA node(s): 2
Vendor ID: GenuineIntel
CPU family: 6
Model: 63
Model name: Intel(R) Xeon(R) CPU E5-2660 v3 @ 2.60GHz
Stepping: 2
CPU MHz: 1198.779
CPU max MHz: 3300.0000
CPU min MHz: 1200.0000
BogoMIPS: 5193.70
Virtualization: VT-x
L1d cache: 32K
L1i cache: 32K
L2 cache: 256K
L3 cache: 25600K
NUMA node0 CPU(s): 0-9,20-29
NUMA node1 CPU(s): 10-19,30-39
Flags: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss ht tm pbe syscall nx pdpe1gb rdtscp lm constant_tsc arch_perfmon pebs bts rep_good nopl xtopology nonstop_tsc cpuid aperfmperf pni pclmulqdq dtes64 monitor ds_cpl vmx smx est tm2 ssse3 sdbg fma cx16 xtpr pdcm pcid dca sse4_1 sse4_2 x2apic movbe popcnt aes xsave avx f16c rdrand lahf_lm abm cpuid_fault epb invpcid_single pti intel_ppin tpr_shadow vnmi flexpriority ept vpid ept_ad fsgsbase tsc_adjust bmi1 avx2 smep bmi2 erms invpcid cqm xsaveopt cqm_llc cqm_occup_llc dtherm ida arat pln pts
`
[+] /scratch/users/dantopa/new-spack/strawman.pr.libhio/opt/spack/linux-centos7-x86_64/gcc-4.8.5/libhio-1.4.1.3-s4fnmesfp65trhks5qi3it5p73ssfpsp
[+] /scratch/users/dantopa/new-spack/strawman.pr.libhio/opt/spack/linux-centos7-x86_64/gcc-4.8.5/libhio-1.4.1.2-fkgh5vqpijvwqywffmokgmsglqxwfrtl
`
**Arm**
Architecture: aarch64
Byte Order: Little Endian
CPU(s): 256
On-line CPU(s) list: 0-255
Thread(s) per core: 4
Core(s) per socket: 32
Socket(s): 2
NUMA node(s): 2
Model: 0
BogoMIPS: 400.00
L1d cache: 32K
L1i cache: 32K
L2 cache: 256K
L3 cache: 32768K
NUMA node0 CPU(s): 0-127
NUMA node1 CPU(s): 128-255
Flags: fp asimd evtstrm aes pmull sha1 sha2 crc32 atomics cpuid asimdrdm
`
[+] /scratch/users/dantopa/new-spack/strawman.pr.libhio/opt/spack/linux-rhel7-aarch64/gcc-4.8.5/libhio-1.4.1.3-q6nnwiy6bi7ktnghdsngwamom23zpmgy
[+] /scratch/users/dantopa/new-spack/strawman.pr.libhio/opt/spack/linux-rhel7-aarch64/gcc-4.8.5/libhio-1.4.1.2-y6nwovff3qbdy242zc4x2toloz6xpcvm
`
2019-02-25
Signed-off-by: Daniel Topa <dantopa@lanl.gov>
2019-02-26 09:56:20 +01:00
Stephen Hudson
7c38dc06dc
libEnsemble package: add v0.4.1 ( #10688 )
...
Also add v0.4.0 and remove version lower bound on petsc4py
2019-02-25 14:37:51 -06:00
Michael Kuhn
385d108b5d
slurm: Add PMI support ( #10683 )
...
- Add support for pmix (optional)
- Install pmi2 header and library
2019-02-25 13:05:31 -06:00
Elsa Gonsiorowski, PhD
d85a0bae8f
mpiFileUtils v0.9 ( #10676 )
...
* working on updating to cmake
* generic package, any ver of cmake
* install for autotools or cmake
2019-02-25 09:24:52 -08:00
Hadrien G
236180c109
ACTS: new package ( #10600 )
2019-02-25 11:11:01 +01:00
Sinan
691a2f4b71
py-unicycler: new package ( #7727 )
2019-02-25 09:44:05 +01:00
Denis Davydov
2851b3f57c
dealii: fix default of cuda_arch ( #10690 )
2019-02-24 08:53:13 +01:00
Adam J. Stewart
b43e8fcaa7
Python: optional dependencies and post-installation tests ( #10335 )
...
* Add post-installation tests to Python package
* libbsd does not build on macOS
* Make Python dependencies optional
* Add readline dep, remove ncurses patch, fix autoreconf
2019-02-23 12:36:26 -06:00
Justin Stanley
68af6148d1
beast-tracer: new package at 1.7.1 ( #10652 )
2019-02-22 19:22:30 -06:00