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7702 commits

Author SHA1 Message Date
Eric Martin
ec45c22808 netgen: update broken URL (#10882) 
* netgen: update broken URL

* netgen: fix url_for_version URL
 2019-03-22 10:01:07 -05:00
Michael Kuhn
b6185d4ad7 openfoam-com: Fix flex dependency (#10956) 
openfoam-com needs flex's FlexLexer.h, which can only be found if flex
is also a link dependency.
 2019-03-22 12:46:53 +01:00
Eric Martin
ba5f37ee26 vdt: Add version 0.4.3 (#10982) 2019-03-22 11:57:30 +01:00
Michael Kuhn
ea227b9974 py-hpccm: New package (#10957) 2019-03-22 11:39:10 +01:00
Eric Martin
1599dce2ae canu: Add versions 1.8 and 1.7 (#10978) 2019-03-22 11:27:36 +01:00
Eric Martin
563e573b13 megahit: Add version 1.1.4 (#10979) 2019-03-22 11:19:28 +01:00
Eric Martin
d9eaad80c3 racon: Add versions 1.3.2 and 1.3.1 (#10980) 2019-03-22 11:19:13 +01:00
Eric Martin
487fa5713c trimgalore: Add versions 0.6.0 and 0.6.1 (#10981) 2019-03-22 11:18:45 +01:00
Eric Martin
46e0ad3269 bowtie: Add missing zlib dependency (#10984) 2019-03-22 11:17:16 +01:00
Matthias Diener
133d4ca9ce gdb: add version 8.2.1 (#10988) 2019-03-22 11:00:28 +01:00
Hadrien G
cc8a086082 ACTS: add version 0.8.2 (#10974) 2019-03-22 10:59:45 +01:00
Denis Davydov
6d971c4493 add ginkgo package, use it in dealii along with symengine (#10917) 2019-03-22 10:58:48 +01:00
Stephen McDowell
7bc899d9ca add eigen v3.3.7 (#10955) 2019-03-21 12:16:26 -05:00
Patrick Schratz
bffe3a605f update R to v3.5.3 (#10928) 
* update R to v3.5.3
 2019-03-20 13:06:57 -05:00
Michael Kuhn
e02eb3633e mpich: Do not use libfabric@1.7: with ch3 ofi netmod (#10919) 2019-03-20 10:01:39 -07:00
Michael Kuhn
c66a24f22d pkgconf: add 1.6.0 (#10942) 2019-03-20 14:10:11 +01:00
bfovet
81f699eca3 Update GMSH to 4.2.2 with OpenMP variant (#10914) 2019-03-20 05:12:57 +01:00
Patrick Schratz
f51bce5636 saga-gis: new versions up to 7.3.0 (#10922) 2019-03-20 05:03:14 +01:00
Denis Davydov
de3ff1a96b gettext: fix dependency type of xz (#10935) 2019-03-20 04:57:08 +01:00
sknigh
e717230bf8 added yara (#10901) 2019-03-20 04:55:02 +01:00
fcannini
9a8c4cf071 gromacs: make sure cuda support is disabled when cuda=False (#10936) 
* abinit: Fix building with hdf5/netcdf.

* gromacs: Fix attempt to build with cuda support when 'cuda=False'

If for some reason there's a cuda toolkit installed by other means,
(i.e. not by spack) cmake will still try to build with cuda support,
even though 'cuda=False' is the default of the spec.

* Revert "abinit: Fix building with hdf5/netcdf."

This reverts commit e16f725e37b91193fe519b1821446c76ab551928.

This should not be here.
 2019-03-20 04:54:03 +01:00
Michael Kuhn
1db5a3e0a3 libfabric: add 1.6.2 (#10918) 2019-03-20 04:52:50 +01:00
Matthias Diener
d935048982 git: add version 2.21.0 (#10937) 2019-03-20 04:49:47 +01:00
Michael Kuhn
b48a6f22be strace: add 5.0 (#10940) 2019-03-20 04:48:13 +01:00
Michael Kuhn
09d57d8cee libeatmydata: new package (#10941) 2019-03-20 04:47:45 +01:00
Kelly (KT) Thompson
a1eeeadfd8 Branson: provide new versions. (#10926) 
* Branson: provide new versions.

+ Also update dependencies (newer version have fewer dependencies).

* fix style issue
 2019-03-19 08:49:58 -06:00
Kelly (KT) Thompson
29ce8eb892 Draco: add variants (#10925) 
* Draco: add variants

+ This package has many optional build dependencies that were not registered in
  older versions of this recipe.  I've added (and tested) this more complete
  list of optional dependencies: parmetis, superlu-dist, qt.

* fix style issues
 2019-03-19 08:49:30 -06:00
Owen Solberg
3618d405b1 added checksum for new bowtie2 version (#10930) 2019-03-19 15:14:25 +01:00
Christoph Junghans
a6ccd99054
cabana: cuda backend (#10660) 2019-03-18 14:02:28 -06:00
Massimiliano Culpo
4aead5e35b
redis: new package (#10915) 
Added versions from 4.0.11 to 5.0.3

closes #9180
 2019-03-16 14:47:11 +01:00
Mark W. Krentel
e811e23f2e hpcviewer: new package (#10878) 
* hpcviewer: new package

Add binary package for hpcviewer and hpctraceviewer for the Rice
hpctoolkit on Linux x86_64, ppc64 and ppc64le.

* ibm-java: add property 'home' so that spec['java'].home will work.

* Flake

* More flake.

* Test that the version, machine type pair exists before using it in the
sha dictionaries so that 'spack info' doesn't crash on unsupported
configurations.
 2019-03-15 15:47:22 -05:00
Chris Green
6de6d5396c New package: mariadb-c-client (#7729) 
* mariadb-c-client is a new package using the distinct, LGPL,
  MySQL-compatible client library from mariadb.com. It provides the
  virtual package mariadb-client
* mariadb is recorded as a provider of the mariadb-client virtual
* The mysql-client virtual package is also added, and mariadb-c-client
  is recorded as a provider for it
 2019-03-15 14:12:30 -05:00
Adam J. Stewart
82e3380049
Add latest version and missing dependencies of MySQL (#10904) 
* Add latest version and missing dependencies of MySQL

* m4 only needed on solaris
 2019-03-15 14:01:54 -05:00
Christoph Junghans
4baf3d9d02 py-espressopp: add v2.0.2 (#10909) 2019-03-15 12:59:23 -05:00
Matthias Diener
dd09ab697b cmake: add version 3.14.0 (#10908) 2019-03-15 11:49:59 -05:00
Adam J. Stewart
cba5a8058e
Add ladot package (#10905) 2019-03-15 01:13:25 -05:00
Adam J. Stewart
4e6285a19b
Ensure that every package has a description (#10896) 2019-03-14 20:49:07 -05:00
Jordan Ogas
1d73868333 charliecloud: added version 0.9.8 (#10900) 2019-03-14 20:36:53 +01:00
Chris Green
6a9f02c96f cppunit: support cxxstd. (#10888) 2019-03-14 16:17:31 +01:00
Elizabeth Fischer
f15f3076db libxaw: added version 1.0.12 (#10591) 2019-03-14 12:55:56 +01:00
Levi Baber
a71664a42d py-pybigwig: needs curl at link time (#10892) 2019-03-14 11:07:50 +01:00
Cody Balos
4025ec9508 sundials: add new version (4.1.0) (#10890) 2019-03-14 11:00:22 +01:00
Nichols A. Romero
ec5bf38245 QMCPACK More CUDA Fixes (#10864) 
* Throw InstallError if more than one GPU architecture is passed to cuda_arch. Previous cuda_arch test was not actually working because comparison with none string was on the cuda_arch list instead of the first entry of the list.

* Removing redundant cuda_arch statement.
 2019-03-13 16:03:28 -05:00
Eric Martin
2bca687605 py-treehash: Create new package (#10872) 2019-03-13 16:03:09 -05:00
Levi Baber
39c40ee3fc revbayes: new version (#10873) 2019-03-13 21:36:13 +01:00
Michael Kuhn
d3365e4356 libplist, libusbmuxd: Fix pkgconfig dependency (#10876) 
pkgconfig is the correct virtual provider.
 2019-03-13 14:55:23 -05:00
Michael Kuhn
db79317eb9 cubelib, cubew: Add missing pkgconfig dependency (#10875) 2019-03-13 20:15:02 +01:00
Michael Kuhn
3019068e0c mpich: Add patch to fix node list parsing (#10870) 
mpich@3.3 introduced a new regex-based function for node list parsing
that does not recognize hostnames without a dash properly.
 2019-03-13 10:58:05 -07:00
Eric Martin
358226b946 py-biomine: new package (#10868) 2019-03-13 15:17:06 +01:00
Eric Martin
6a87b6215f help2man: Add version 1.47.8 and perl runtime dependency (#10862) 2019-03-13 15:11:45 +01:00