Commit graph

13443 commits

Author SHA1 Message Date
Oliver Breitwieser
4c4aba5f9e ack: Fix install modifying download cache (#13836)
This makes several installs from the same download cache impossible once
the hash of the used perl-install changes.

Fixes: #13824

Change-Id: I5f10d9d54ae999d0ca7e4171f989dfca2e6a7169
2019-11-24 17:33:49 -06:00
Christoph Junghans
959f52dbf5
tinker: initial commit (#13869) 2019-11-24 10:31:15 -07:00
Christoph Junghans
8b1d800d53
ncurses: don't run strip internally (#13843)
* ncurses: don't run strip internally

* setup_environment -> setup_build_environment

* fix ABI change
2019-11-23 20:47:59 -07:00
Adam J. Stewart
c3c5abb9cc
py-matplotlib backend dependencies needed at runtime (#13867) 2019-11-23 21:23:45 -06:00
Adam J. Stewart
42a0061cb0
Add py-scipy 1.3.3 (#13866) 2019-11-23 16:50:02 -06:00
Joe Koning
c7472e0cbe Add the py-humanfriendly package (#13853) 2019-11-23 19:12:03 +01:00
Adam J. Stewart
e5588880d5 Fix setuptools dependency in py-snowballstemmer (#13844) 2019-11-23 15:25:24 +01:00
Joe Koning
0a14a0c48d Add the py-billiard package (#13849) 2019-11-23 14:14:28 +01:00
Joe Koning
836b6016e4 Add the py-parse package (#13856) 2019-11-23 09:36:29 +01:00
Joe Koning
2c8a867a81 Add the py-vine package (#13857) 2019-11-23 09:35:07 +01:00
Sajid Ali
ff64004a7b likwid: added version 5.0.0 (#13858) 2019-11-23 09:21:59 +01:00
Joe Koning
99650d6caf py-cached-property: added new package at v 1.5.1 (#13850) 2019-11-23 09:20:24 +01:00
darmac
b95961d26b ethtool: new package at version 4.8 (#13864) 2019-11-23 09:17:49 +01:00
Satish Balay
da883f2270 petsc: add version 3.12.2 (#13859) 2019-11-22 20:35:16 -06:00
George Hartzell
48420d0c24 New package: py-wub, with supporting fixes (#13773)
* Add py-wub, with supporting fixes

- add py-wub
- add py-pycmd because py-wub needs it
- update py-statsmodels, which needs at least v0.9.0 to work with
  python3.7 because cython.

* Update based on Adam's comments

* Fix dependency types for py-six in py-wub

* statsmodels tests fail, update comment w/ Issue #

The statsmodels tests weren't run in the previous version of the
package.  If I enable them, the fail.

Update the package comment with the statsmodels issue I opened to
track the problem:
https://github.com/statsmodels/statsmodels/issues/6263

* Update dependency types in py-wub/package.py

* flake8 cleanups

* Make statsmodels tests work

- need to use patsy@0.5.1:
- need to run the tests from within the build/lib* dir
2019-11-22 20:34:43 -06:00
Greg Becker
6c55a7c85f
cmd/install: remove unused install_status option (#13751)
* cmd/install: remove unused install_status option

* update bash completions for spack install
2019-11-22 11:17:37 -07:00
Massimiliano Culpo
f53abbecd3
Remove mirrors from Travis cache (#13841) 2019-11-22 19:00:00 +01:00
Christoph Junghans
b23d2efd99
votca-*: add v1.5.1 (#13822) 2019-11-21 16:09:03 -07:00
Massimiliano Culpo
0684a58d16 Fixed detection for cascadelake microarchitecture (#13820)
fixes #13803
2019-11-21 13:09:48 -07:00
George Hartzell
73038a3f51 Add mg, a gnu-emacs like fork of microemacs (#13812)
* Add mg, a gnu-emacs like fork of microemacs

* Use Package, since not really an Autotools package

Switch from AutotoolsPackage to Package.  Even though mg has a
configure script, it's not really an Autotools package.

* Need to also provide --prefix to configure
2019-11-21 11:40:13 -07:00
Toyohisa Kameyama
bed7e40dcc cbtf-krell: add rpcsvc-proto and libtirpc dependency. (#13800) 2019-11-21 11:38:09 -07:00
Elizabeth Fischer
9a6a19d464 doxygen: added missing dependencies to the package (#10589)
See http://www.doxygen.nl/manual/install.html
2019-11-21 15:30:31 +01:00
t-karatsu
49b9365205 texinfo: fix unescaped braces, and update locale handling (#13815)
* texinfo: Fix unescaped braces for older version.

* texinfo: update locale handling.
2019-11-20 20:54:55 -07:00
Shintaro Iwasaki
71cd91e4c1 update Argobots and BOLT (#13765)
* argobots: update to 1.0rc2

* bolt: update to 1.0rc3

* argobots/bolt: add maintainers

* argobots: use "master" for the master branch
2019-11-20 19:04:46 -07:00
Douglas Duckworth
100fcc2c8e added hmmer v 3.3 (#13793) 2019-11-20 19:04:27 -07:00
Brian Van Essen
2f069b571d Updated versions numbers for Aluminum and Hydrogen. (#13814) 2019-11-20 19:04:01 -07:00
Paul Ferrell
fb3a3ba95e mirror bug fixes: symlinks, duplicate patch names, and exception handling (#13789)
* Some packages (e.g. mpfr at the time of this patch) can have patches
  with the same name but different contents (which apply to different
  versions of the package). This appends part of the patch hash to the
  cache file name to avoid conflicts.
* Some exceptions which occur during fetching are not a subclass of
  SpackError and therefore do not have a 'message' attribute. This
  updates the logic for mirroring a single spec (add_single_spec)
  to produce an appropriate error message in that case (where before
  it failed with an AttributeError)
* In various circumstances, a mirror can contain the universal storage
  path but not a cosmetic symlink; in this case it would not generate
  a symlink. Now "spack mirror create" will create a symlink for any
  package that doesn't have one.
2019-11-20 17:00:44 -07:00
t-karatsu
9cd778f152 ampliconnoise: Change return type of function. (#13766)
* ampliconnoise: Change function type.

* ampliconnoise: updated api call to setup run environment
2019-11-20 16:03:51 -07:00
健美猞猁
1e52aa750a find-circ: a new package. (#13767)
* find-circ: a new package.

* flake8.
2019-11-20 16:02:34 -07:00
健美猞猁
5e9ca0f939 miranda: a new package. (#13768) 2019-11-20 16:01:41 -07:00
Figroc Chen
ace47cecbe tensorflow-serving-client: add new package (#13771) 2019-11-20 16:01:04 -07:00
t-karatsu
af9281b843 bpp-suite: Clarify 'isinf' function's namespace. (#13777) 2019-11-20 15:52:44 -07:00
David Hows
ad4986be94 Fix for overlong shebang in valgrind (#13779)
Fix for some overlong shebangs in valgrind. Borrowed from verrou/package.py
2019-11-20 15:50:14 -07:00
noguchi-k
894267e02e py-numexpr3: fix version (#13781) 2019-11-20 15:49:13 -07:00
Ken Raffenetti
f25cf16b11 mpich: Add 3.3.2 (#13790) 2019-11-20 15:48:11 -07:00
Justin S
63874db562 genrich: new package at 0.6 (#13791) 2019-11-20 15:47:36 -07:00
Justin S
38ae7ab6cd sentieon-genomics: add 201808.07 (#13794) 2019-11-20 15:46:22 -07:00
Adam J. Stewart
4e4e3d192e
Add old version of py-gast (#13806) 2019-11-20 15:21:03 -07:00
Adam J. Stewart
0d1e9c6e06
Add py-google-pasta package (#13807) 2019-11-20 15:20:47 -07:00
Adam J. Stewart
d43364d679
Add new py-grpcio package (#13808) 2019-11-20 15:20:28 -07:00
Adam J. Stewart
d19eb21181
Add c-ares 1.15.0 (#13809) 2019-11-20 15:20:08 -07:00
Adam J. Stewart
33059daff4
Add old versions and missing dependencies to py-protobuf (#13811) 2019-11-20 15:19:47 -07:00
Adam J. Stewart
ea42d67a9a
Add old version of jdk (#13805)
* Add old version of jdk

* setup_environment -> setup_build_environment
2019-11-20 15:19:22 -07:00
Brian Van Essen
66cf530459 Added package for Clara command line parser (#13763)
* Added package for Clara command line parser
2019-11-20 00:12:43 -07:00
t-karatsu
513fe55fc3 Features/expand microarch for aarch64 (#13780)
* Add process to determine aarch64 microarchitecture

* add microarchitectures for thunderx2 and a64fx

* Add optimize flags for gcc on aarch64 family processors thunderx2 and a64fx.

* Add optimize flags for clang on aarch64 family processors thunderx2 and a64fx

* Add testing for thunderx2 and a64fx microarchitectures
2019-11-20 00:01:12 -07:00
albestro
f25a4ab089 add MAX_CPU_COUNT variant to HPX package (#13769)
* add MAX_CPU_COUNT variant to HPX package

* compatibility with python2

* correct variant description

Co-Authored-By: Mikael Simberg <mikael.simberg@iki.fi>

* add maintainers list
2019-11-19 12:49:32 -07:00
George Hartzell
d00be588e3 zlib: use setup_build_environment for build env (#13786)
zlib was using the deprecated setup_environment call.  Now it's using
the current setup_build_environment.

(noticed this in some `spack -d` output)
2019-11-19 12:29:35 -07:00
ktsai7
bb0667ceaf add more legion version and expose more flecsi options (#13741)
* add more legion version and expose more flecsi options

* formatting

* update version pointing to master to master

* fix indentation

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* Update package.py

* use self.run_tests

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

* Update package.py

* Update package.py

* Update package.py
2019-11-18 23:51:41 -07:00
Greg Becker
99dfff4475
binary distribution: relocate text files properly in relative binaries (#13578)
* Make relative binaries relocate text files properly
* rb strings aren't valid in python 2
* move perl to new interface for setup_environment family methods
2019-11-18 14:13:42 -07:00
健美猞猁
e433a5dc0b py-rnacocktail: a new package. (#13761)
* py-rnacocktail: a new package.

* flake8.

* Add build-time dependencies.
2019-11-18 14:09:39 -07:00