Commit graph

18209 commits

Author SHA1 Message Date
iarspider
03611f2e89
Thepeg fix (#19405)
* Add recipe for qgraf

* Revert "Add recipe for qgraf"

This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd.

* Fixes for thepeg

Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20 16:33:17 -05:00
Josh Essman
cee5c2e755
mfem: Fix support for SUNDIALS and PETSc features (#19326)
* mfem: specify PETSC_DIR, link correct sundials libraries

* fix: only use PETSC_DIR directly for static builds

* fix: only use sundials nvecmpiplusx for MFEM 4.2+
2020-10-20 16:26:34 -05:00
eugeneswalker
fa9ad0a3da
tau unwind patch: only patch 2.29, not 2.29.1 (#19409) 2020-10-20 16:25:52 -05:00
iarspider
d9bb90d06e
Lhapdf extends python (#19398)
* Add recipe for qgraf

* Revert "Add recipe for qgraf"

This reverts commit 76783f73867a32b4a96e980e31a433ed3c0037fd.

* LHAPDF should extend Python to get env variables correct

Co-authored-by: Ivan Razumov <ivan.razumov@cern.ch>
2020-10-20 14:59:54 -05:00
Jean-Paul Pelteret
3a56248eba
deal.II: Add more conflicts due to symbol clashes between dependencies (#19408) 2020-10-20 14:55:22 -05:00
Massimiliano Culpo
a51702e3a2
py-archspec: added new package at v0.1.1 (#19395) 2020-10-20 18:40:31 +02:00
darmac
53fc4f92b7
axel: fix build error (#19387) 2020-10-20 11:01:26 -05:00
Chuck Atkins
9241cad299
mesa: Restrict llvm to < 11 (#19393) 2020-10-20 11:59:50 -04:00
darmac
0d1002750e
refine setuptools version to avoid spec conflict (#19384) 2020-10-20 10:56:05 -05:00
GaneshPrasadMA
0253f0af29
Adding AOCC compiler to SPACK community (#19345)
* Adding AOCC compiler to SPACK community

The AOCC compiler system offers a high level of advanced optimizations, multi-threading and processor support that includes global optimization, vectorization, inter-procedural analyses, loop transformations, and code generation. AMD also provides highly optimized libraries, which extract the optimal performance from each x86 processor core when utilized. The AOCC Compiler Suite simplifies and accelerates development and tuning for x86 applications.

* Added unit tests for detection and flags for AOCC

* Addressed reviewers comments w.r.t version checks and url,checksum related line lengths

Co-authored-by: Test User <spack@example.com>
2020-10-20 10:50:09 -05:00
ketsubouchi
f68287afe9
boost: fix building old versions with non-system glib and bzip2 (#19389) 2020-10-20 15:39:57 +02:00
Toyohisa Kameyama
9beadc3c14
krims: disable float80 when non x86_64. (#19388) 2020-10-20 15:37:47 +02:00
Roberto Di Remigio
bac1f94046
MRCPP: added new versions up to v1.3.5 (#19257)
Removed all alpha versions too
2020-10-20 14:07:22 +02:00
Seth R. Johnson
18960435af
py-pyqt4: Require older version of PySIP (#19391)
Fixes #19322, thanks sto @Sinan81.
2020-10-20 14:05:11 +02:00
Greg Becker
bf47045302
Fix python scripts relying on external python in env (#19241) 2020-10-20 10:09:13 +02:00
Glenn Johnson
87da91cef6
add updated version of py-dnaio (#19374)
* add updated version of py-dnaio

* Add py-setuptools-scm build dependency

* Fine tune the py-xopen dependency constraint

The needed version of xopen does not become specific until v0.4 of
dnaio.

* Set constraint on py-setuptools-scm

The py-setuptools-scm dependency is needed beginning with v0.4.
2020-10-19 19:53:12 -05:00
Glenn Johnson
bb87c1ff54
updated version of py-cutadapt (#19373)
* updated version of py-cutadapt

* Update dependency specs

* Add py-setuptools-scm build dependency

* More constraint fixes

* Fix version range for py-xopen
2020-10-19 19:52:27 -05:00
Martin Aumüller
b5ff28522a
Add new package: botan (#19362) 2020-10-19 19:51:15 -05:00
Sajid Ali
3fd3676fc0
gdbm patch (#19380)
* gdbm patching

* compiler name fix

* rename patch
2020-10-19 19:49:31 -05:00
Sajid Ali
7052c65031
external find for cpio (#19379)
* external find for cpio

* address reviewer comments
2020-10-19 17:48:27 -05:00
wspear
92bbc2e789
Added tau version 2.29.1 hash (#19329)
* Added tau version 2.29.1 hash

* Update var/spack/repos/builtin/packages/tau/package.py

Make version name match branch name (master)

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19 16:25:58 -05:00
Scott Wittenburg
f561d3845b
Fix "buildcache update-index --keys ..." when mirror is S3 (#19141) 2020-10-19 15:24:41 -06:00
Glenn Johnson
449604bfe8
add updated version of py-xopen (#19375)
* add updated version of py-xopen

* Update dependency constraints

* Further refine the python constraints

Also, put them all together.

* Put python constraints at top of list
2020-10-19 16:15:20 -05:00
Sergey Kosukhin
75bfdc7335
netcdf-fortran: support for Cray compiler (#18971) 2020-10-19 16:12:09 -05:00
Glenn Johnson
c31e96dcd7
New package - pulseaudio (#19378)
This PR adds the pulseaudio package and the speexdsp package as a
dependency. In addition, this PR adds a `libs` property to the libtool
package.
2020-10-19 16:11:45 -05:00
Glenn Johnson
95b9875e95
New package - Gate (#19377)
* New package - Gate

This PR adds the Gate package as well as the ITK dependency.

* Fix flake 8 errors

* Be more explicit with CMake options

Make sure Cmake values related to variants are explicitly set to either
ON/OFF.

The ITK_USE_MKL flag will turn on the following:
- USE_FFTWD=ON
- USE_FFTWF=ON
- USE_SYSTEM_FFTW=ON

Since the package depends on fftw-api, those options will always be set.
2020-10-19 16:07:47 -05:00
Glenn Johnson
152144f17a
add updated version of trimgalore (#19376) 2020-10-19 14:53:12 -05:00
Glenn Johnson
302c69eb55
Add updated version of fastqc (#19372) 2020-10-19 13:57:43 -05:00
Dr. Christian Tacke
765b41fd34
util-linux: Add version 2.33.1 (#19370) 2020-10-19 13:27:40 -05:00
Robert Pavel
c3f3cea516
Added thrust@1.8.3 (#19368)
Added version 1.8.3 to thrust
2020-10-19 13:26:58 -05:00
Sebastian Schmitt
aef1ff7ec5
Remove version in extends (#19366)
extends expects the package name only.

Cf. #12480.
2020-10-19 13:26:37 -05:00
Andrew W Elble
0df70e217f
A collection of tensorflow fixes and updates (#19371)
* A collection of tensorflow fixes and updates

* tensorflow 2.3.1 requires the workaround for external protobuf as well
* Update tensorflow-estimator to 2.3.0
* Update tensorboard to 2.3.0
* Update tensorboard-plugin-wit to use actual releases
* Patch that potentially fixes #16073

* add myself to maintainer list
2020-10-19 13:15:49 -05:00
G-Ragghianti
9cd2ab48ab
Slate package: resolves missing header issue (#19032)
* Changed make command to support new slate build variable 'blas='

* Updated to use package's "make install" target

* Added variant 'blas' to support switching blas provider and removed legacy 'mkl' variant.

* Fixed problem caused by systems which use a non-bash /bin/sh

* Removed blas= variant in preference for setting blas provider via spec syntax (e.g., ^openblas).

* Fixed formating

* Changed to MakefilePackage and cleaned up make argument generation

* Implemented "edit" method

* Removed blank line

* Sqitched to using mpi compiler wrapper variables

* Update var/spack/repos/builtin/packages/slate/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19 12:16:10 -05:00
darmac
761b79e34f
r-rgeos: fix build error (#19360) 2020-10-19 10:33:32 -05:00
Amjad Kotobi
432772dbb6
openssh: new version 8.4p1 (#19358) 2020-10-19 10:32:43 -05:00
Amjad Kotobi
cbd100819a
anaconda3: new versions (#19357) 2020-10-19 10:31:58 -05:00
darmac
68b05b43e0
Add new package: py-mido (#19355) 2020-10-19 10:22:08 -05:00
darmac
b4f254df5d
Add new package: py-cekit (#18813)
* Add new package: py-cekit

* refine dependencies
2020-10-19 10:21:08 -05:00
darmac
ced73019de
Add new package: tpm2-tss (#18824)
* Add new package: tpm2-tss

* remove patch(), there's no need to use it
2020-10-19 10:14:51 -05:00
darmac
78986c5575
Add new package: percona-server (#18818) 2020-10-19 10:13:55 -05:00
darmac
d48b186500
py-coapthon3: added new package at v1.0.1 (#18990)
* Add new package: py-coapthon3

* remove mistake version
2020-10-19 11:42:48 +02:00
darmac
3807ceec0b
premake-core: added new package at v5.0.0-alpha15 (#18807) 2020-10-19 10:39:40 +02:00
darmac
9799c553e8
wsmancli: added new package at v2.6.0 (#18906) 2020-10-19 10:30:41 +02:00
darmac
fb2aba6f0f
junit4: added new package at v4.13 (#18769)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-10-19 10:11:00 +02:00
Sergey Kosukhin
fd7bfb1a50
filter_compiler_wrappers: a fix for NAG (#17133) 2020-10-18 23:18:18 -05:00
elsagermann
4750d479a0
Add testing option to dev-build command (#17293)
* ADD: testing to dev-build command

* RM: mutally exclusive group for testing in parser

* FIX: test option to subparser and not testing

* ADD: spack-completion.bash

* RM: local devbuildcosmo cmd

* FIX: bad merge --drop-in -b --before options forgotten

* FIX: --test place in spack-completion.bash

* FIX: typo

* FIX: blank line removing

* FIX: trailing white space

Co-authored-by: Elsa Germann <egermann@tsa-ln002.cm.cluster>
2020-10-18 23:17:07 -05:00
ketsubouchi
05ffbbc0be
butterflypack: Support fj Fortran (#17514)
* butterflypack: Support fj Fortran

* butterflypack: split patch

* butteflypack: add ieee_support_nan
2020-10-18 23:16:19 -05:00
Massimiliano Culpo
008b77a2a7
nag: added external detection capabilities (#18153) 2020-10-18 23:12:05 -05:00
Wouter Deconinck
9471e9cb03
[docs] Pkg list: current version, not latest release (#18213)
The package list at https://spack.readthedocs.io/en/latest/package_list.html claims "it is automatically generated based on the packages in the latest Spack release" but it is actually based on the develop branch. This leads to confusion when users find that e.g. herwigpp is included in the list, but it cannot be found when they install the latest release. That latest release has a package list at https://spack.readthedocs.io/en/stable/package_list.html which does indeed not include herwigpp.

Changing the language from "the latest Spack release" to "this Spack version" might make that clearer. Maybe.
2020-10-18 23:11:20 -05:00
Robert Blake
1b558aaa81
mpich: Add external find support (#18330)
* Adding external support to mpich

* Removing debugging print statement.
2020-10-18 23:09:13 -05:00