Commit graph

34141 commits

Author SHA1 Message Date
Mark W. Krentel
798770f9e5
hpctoolkit: add conflict for recent intel-xed (#41413)
Intel made an incompatible change in XED in 2023.08.21 that breaks
hpctoolkit (at run time).  Hpctoolkit develop can adapt (soon will),
but older versions must use xed :2023.07.09.
2023-12-05 11:17:37 +01:00
Jim Edwards
4a920243a0
cprnc: update sha256 for github artifacts (#41418) 2023-12-05 11:13:14 +01:00
Ben Wibking
8727195b84
openblas: fix macOS build when using XCode 15 or newer (#41420)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2023-12-05 09:53:54 +01:00
Massimiliano Culpo
456f2ca40f
extensions: improve docs, fix unit-tests (#41425) 2023-12-05 09:49:35 +01:00
dependabot[bot]
b4258aaa25
build(deps): bump docker/metadata-action from 5.2.0 to 5.3.0 (#41423)
Bumps [docker/metadata-action](https://github.com/docker/metadata-action) from 5.2.0 to 5.3.0.
- [Release notes](https://github.com/docker/metadata-action/releases)
- [Commits](e6428a5c4e...31cebacef4)

---
updated-dependencies:
- dependency-name: docker/metadata-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-05 09:48:29 +01:00
Mitch B
5d9647544a
arrow: add versions up to v14.0.1 (#41424) 2023-12-05 09:48:03 +01:00
Brian Van Essen
1fdb6a3e7e
Updating the LBANN, Hydrogen, and DiHydrogen recipes (#41390)
* Updating the LBANN, Hydrogen, and DiHydrogen recipes for both new
variants and to make sure that RPATHs are properly setup.

Co-authored-by: bvanessen <bvanessen@users.noreply.github.com>
2023-12-05 09:31:51 +01:00
Robert Cohn
7c77b3a4b2
[intel] deprecate all versions (#41412)
Deprecating intel package, which contains intel classic compilers. This package has not been updated in 3 years. Please use intel-oneapi-compilers instead.
2023-12-04 21:52:55 -07:00
Ye Luo
eb4b8292b6
A few changes to quantum-espresso (#41225)
* gipaw.x installed by cmake if version >= 5c4a4ce.
  gipaw.x will only be installed with cmake if the qe-gipaw version
  is >= 5c4a4ce. Currently, QE source uses the older f5823521 one.
  Here a patch to the submodule_commit_hash_records to use a newer
  qe-gipaw version.
* Update package.py
* Delete var/spack/repos/builtin/packages/quantum-espresso/gipaw-eccee44.patch
* Update package.py
* Restoring gipaw-eccee44 patch
* Update package.py
* Add fox variant in quantum-espresso
* Fix an issue introduced in #36484. Patches are 7.1 only.
* Change plugin handling.
* formatting.
* Typo correction
* Refine conflict

---------

Co-authored-by: S. Alexis Paz <alexis.paz@gmail.com>
2023-12-04 11:37:05 -08:00
John Biddiscombe
16bc58ea49
Add EGL support to ParaView and Glew (#39800)
* Add EGL support to ParaView and Glew

add a package for egl that provides GL but also adds
EGL libs and headers for projects that need them

Fix a header problem with the opengl package

Format files using black

* better description for egl variant description

Co-authored-by: Vicente Bolea <vicente.bolea@gmail.com>

* better check/setup of non egl variant dependencies

Co-authored-by: Vicente Bolea <vicente.bolea@gmail.com>

* Add biddisco as maintainer

* Fix unused var style warning

* Add egl conflicts for other gl providers

---------

Co-authored-by: Vicente Bolea <vicente.bolea@gmail.com>
2023-12-04 10:53:06 -06:00
Alec Scott
6028ce8bc1
direnv: add v2.33.0 (#41397) 2023-12-04 14:12:13 +01:00
Harmen Stoppels
349e7e4c37
zlib-ng: add v2.1.5 (#41402) 2023-12-04 12:44:10 +01:00
Harmen Stoppels
a982118c1f
ci.py: fix missing import (#41391) 2023-12-04 12:14:59 +01:00
Adam J. Stewart
40d12ed7e2
PythonPackage: type hints (#40539)
* PythonPackage: nested config_settings, type hints

* No need to quote PythonPackage

* Use narrower types for now until needed
2023-12-04 10:53:53 +00:00
James Smillie
9e0720207a
Windows: fix kit base path and reference to windows registry key (#41388)
* Proper handling of argument passed as semicolon-separated str
* Fix reference to windows registry key in win-wdk
2023-12-03 15:35:13 -08:00
Jaelyn Litzinger
88e738c343
Allow exago to use hiop@develop past v1.0.1 (#41384) 2023-12-02 14:06:22 -06:00
Cameron Rutherford
8bbc2e2ade
resolve: add package with cuda and rocm support (#40871) 2023-12-01 20:49:11 -06:00
Julien Cortial
1509e54435
Add MUMPS versions 5.6.0, 5.6.1 and 5.6.2 (#41386)
The patch for version 5.5.x still applies to 5.6.x.
2023-12-01 18:48:00 -07:00
Dom Heinzeller
ca164d6619
Fix curl install using Intel compilers (#41380)
When using Intel to build curl, add 'CFLAGS=-we147' to the configure
args to fix error 'compiler does not halt on function prototype
mismatch'
2023-12-01 17:24:05 -07:00
Felix Werner
a632576231
Add XCDF. (#41379) 2023-12-01 14:56:18 -08:00
Felix Werner
70b16cfb59
Add PhotoSpline. (#41374) 2023-12-01 14:44:53 -08:00
Brian Vanderwende
1d89d4dc13
MET fixes for 11.1 and HDF4 support (#41372)
* MET fixes for 11.1 and HDF4 support
* Fix zlib reference in MET
2023-12-01 14:42:36 -08:00
Dewi
bc8a0f56ed
removed cmake build version pointing to fork (#41368) 2023-12-01 14:39:45 -08:00
Jack Morrison
4e09396f8a
Libfabric: Introduce OPX provider conflict for v1.20.0 (#41343)
* Libfabric: Introduce OPX provider conflict for v1.20.0
* Add message to libfabric 1.20.0 opx provider conflict
2023-12-01 14:35:54 -08:00
Weiqun Zhang
0d488c6e4f
amrex: add v23.12 (#41385) 2023-12-01 22:45:58 +01:00
Erik Heeren
50e76bc3d3
py-pyglet: version bump (#41082)
* py-pyglet: version bump

* py-pyglet: use zip instead of whl, update dependencies

* py-pyglet: 2.0.9 and 2.0.10 zips should be downloaded from github

* py-pyglet: style

* py-pyglet: use virtual packages in dependencies

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* py-pyglet: doesn't depend on py-future any more

* py-pyglet: remove glx dependency

* py-pyglet: back to the pypi zipfiles with patch instead

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
2023-12-01 21:44:30 +01:00
Dave Keeshan
a543fd79f1
verible: add new package (#41270)
* Add initial version of verible to spack
* Update to use explict url path for each release, as the release tagh includes extra data, also added the bottom most point of gcc, gcc9
2023-12-01 10:48:52 -08:00
Adam J. Stewart
ab50aa61db
py-keras: add v3.0.0 (#41356)
* py-keras: add v3.0.0

* Older keras actually requires protobuf

* Correct url_for_version

* Capitalization is important

* Keep pil and pydot deps
2023-12-01 18:23:58 +00:00
Richard Berger
d06a102e69
Various FleCSI updates (#41068)
* flecsi: remove deprecated versions
* flecsi: add explicit conflict for backend=hpx +hdf5
* flecsi: propagate +openmp to kokkos and legion
* flecsi: remove doc variant prior to @2.2
   It wouldn't do anything meaningful and won't install the documentation.

---------

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-12-01 09:41:33 -08:00
Rohit Goswami
b0f0d2f1fb
dftbplus: Update and add upstream maintainer (#33243)
* dftbp: Update and add upstream maintainer
* dftbp: Trust in the hybrid cmake builds
* dftbp: Handle scalapack better
* dftbp: Refactor as per review
* dftbp: Build shared for python
* dftbp: Address review comments
* dftbp: Add another maintainer
* dftp: Fix typo
* dftbp: Arpack for serial builds only
* dftbp: Update option docs
* dftbp: Update documentation for elsi
* dftbp: Add comment for context
* dftbp: Tighter bounds on python
* dftbp: Add negf only when shared
* dftbp: Fix typo
* dftbp: Update sha256
* dftpb: Add when directive for cmake and ninja
* dftbp: Enforce comment

---------

Co-authored-by: Tamara Dahlgren <dahlgren1@llnl.gov>
Co-authored-by: awvwgk <awvwgk@users.noreply.github.com>
Co-authored-by: iamashwin99 <iamashwin99@users.noreply.github.com>
Co-authored-by: Ashwin Kumar Karnad <46030335+iamashwin99@users.noreply.github.com>
Co-authored-by: Sebastian Ehlert <28669218+awvwgk@users.noreply.github.com>
Co-authored-by: tldahlgren <tldahlgren@users.noreply.github.com>
2023-12-01 09:34:11 -08:00
Victoria Cherkas
6029b600f0
eccodes: add v2.32.0, v2.31.0 (#40770)
* eccodes new versions and dependencies
* Suggested changes for multiple variant defaults
* Update var/spack/repos/builtin/packages/eccodes/package.py

---------

Co-authored-by: Sergey Kosukhin <skosukhin@gmail.com>
2023-12-01 09:25:31 -08:00
dependabot[bot]
e6107e336c
build(deps): bump docutils from 0.18.1 to 0.20.1 in /lib/spack/docs (#38174)
Bumps [docutils](https://docutils.sourceforge.io/) from 0.18.1 to 0.20.1.

---
updated-dependencies:
- dependency-name: docutils
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 17:16:34 +01:00
Lydéric Debusschère
9ef57c3c86
py-cma: new package (#41326)
* py-pycma: new package

* rename py-pycma in py-cma; py-cma: use pypi instead of github sources

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:54:02 -06:00
Lydéric Debusschère
3b021bb4ac
py-mahotas: new package (#41329)
* py-mahotas: new package

* py-mahotas: relax version constraint on numpy

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:52:37 -06:00
Richard Berger
42bac83c2e
LAMMPS updates (#40879)
* lammps: add new stable version 20230802.1

* lammps: add missing potential download for +mesont

* lammps: fix python package install

* Update var/spack/repos/builtin/packages/lammps/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* lammps: py-numpy and py-mpi4py should be build and run deps

* lammps: add new 20231121 release

- MPIIO package has been removed -> disable mpiio variant
- LAMMPS_EXCEPTIONS is now always on -> disable exceptions variant
- CMake 3.16+ is now required
- Kokkos 4.1.0 is now supported

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-12-01 07:13:56 -07:00
Lydéric Debusschère
7e38e9e515
py-xmlplain: new package (#41324)
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:02:24 -06:00
Lydéric Debusschère
cf5ffedc23
py-requests-file: new package (#41328)
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 08:00:23 -06:00
Lydéric Debusschère
3a9aea753d
[add] py-autodocsumm: new package (#41309)
Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 07:53:57 -06:00
Lydéric Debusschère
c61da8381c
py-sphinx-jinja2-compat: new package (#41310)
* [add] py-sphinx-jinja2-compat: new package

* py-whey-pth: new package, dependence of py-sphinx-jinja2-compat

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 07:53:02 -06:00
Lydéric Debusschère
8de814eddf
py-sphinx-removed-in: new package (#41325)
* py-sphinx-removed-in: new package

* py-sphinx-removed-in: fix dependence

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
2023-12-01 07:43:40 -06:00
Satish Balay
c9341a2532
petsc, py-petsc4py: add v3.20.2 (#41366) 2023-12-01 07:42:48 -06:00
Manuela Kuhn
8b202b3fb2
py-urllib3: add 2.1.0 and 2.0.7 (#41358) 2023-12-01 07:39:18 -06:00
Dom Heinzeller
2ecc260e0e
Update py-cylc-flow (add version 8.2.3) (#41209)
* Add missing runtime dependency on py-colorama to py-ansimarkup

* Add py-metomi-isodatetime@3.1.0

* New package py-graphql-relay

* Update py-cylc-flowi, add version 8.2.3

* Fix merge conflict

* Revert mistake in var/spack/repos/builtin/packages/py-cylc-flow/package.py

* Update py-metomi-isodatetime dependencies for py-cylc-flow

* Add 'climbfuji' to list of maintainers for py-cylc-flow
2023-12-01 07:33:34 -06:00
Christopher Christofi
6130fe8f57
py-beartype: new package with versions 0.15.0 and 0.16.2 (#39759)
* py-beartype: new package with version 0.15.0

* Update var/spack/repos/builtin/packages/py-beartype/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-beartype: depend on python 3.8 or higher

* py-beartype: add new version 0.16.2

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-12-01 07:29:30 -06:00
Adam J. Stewart
d3aa7a620e
py-mpi4py: fix build with Apple Clang (#41362)
* py-mpi4py: fix build with Apple Clang

* [@spackbot] updating style on behalf of adamjstewart

---------

Co-authored-by: adamjstewart <adamjstewart@users.noreply.github.com>
2023-12-01 05:33:14 -06:00
dependabot[bot]
2794e14870
build(deps): bump pygments from 2.17.1 to 2.17.2 in /lib/spack/docs (#41212)
Bumps [pygments](https://github.com/pygments/pygments) from 2.17.1 to 2.17.2.
- [Release notes](https://github.com/pygments/pygments/releases)
- [Changelog](https://github.com/pygments/pygments/blob/2.17.2/CHANGES)
- [Commits](https://github.com/pygments/pygments/compare/2.17.1...2.17.2)

---
updated-dependencies:
- dependency-name: pygments
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 12:29:42 +01:00
dependabot[bot]
cc1e990c7e
build(deps): bump sphinx-rtd-theme in /lib/spack/docs (#41305)
Bumps [sphinx-rtd-theme](https://github.com/readthedocs/sphinx_rtd_theme) from 1.3.0 to 2.0.0.
- [Changelog](https://github.com/readthedocs/sphinx_rtd_theme/blob/master/docs/changelog.rst)
- [Commits](https://github.com/readthedocs/sphinx_rtd_theme/compare/1.3.0...2.0.0)

---
updated-dependencies:
- dependency-name: sphinx-rtd-theme
  dependency-type: direct:production
  update-type: version-update:semver-major
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 12:29:22 +01:00
dependabot[bot]
59e6b0b100
build(deps): bump mypy from 1.7.0 to 1.7.1 in /lib/spack/docs (#41243)
Bumps [mypy](https://github.com/python/mypy) from 1.7.0 to 1.7.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.7.0...v1.7.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 09:22:23 +01:00
dependabot[bot]
ec53d02814
build(deps): bump docker/metadata-action from 5.0.0 to 5.2.0 (#41371)
Bumps [docker/metadata-action](https://github.com/docker/metadata-action) from 5.0.0 to 5.2.0.
- [Release notes](https://github.com/docker/metadata-action/releases)
- [Commits](96383f4557...e6428a5c4e)

---
updated-dependencies:
- dependency-name: docker/metadata-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 09:21:56 +01:00
dependabot[bot]
389c77cf83
build(deps): bump mypy from 1.6.1 to 1.7.1 in /.github/workflows/style (#41242)
Bumps [mypy](https://github.com/python/mypy) from 1.6.1 to 1.7.1.
- [Changelog](https://github.com/python/mypy/blob/master/CHANGELOG.md)
- [Commits](https://github.com/python/mypy/compare/v1.6.1...v1.7.1)

---
updated-dependencies:
- dependency-name: mypy
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2023-12-01 09:20:56 +01:00