Commit graph

33933 commits

Author SHA1 Message Date
Wouter Deconinck
16f4c53cd4
py-bokeh: new version 3.3.1, and supporting packages (#41089)
* py-bokeh: new version 3.3.1

* py-xyzservices: new package

* py-bokeh, py-xyzservices: update homepages

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* py-bokeh: depends on newer py-numpy

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>

* Apply suggestions from code review

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

---------

Co-authored-by: Manuela Kuhn <36827019+manuelakuhn@users.noreply.github.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 08:47:45 -07:00
Moritz Kern
e8f09713be
Update py-elephant (#39200)
* add elephant version v0.12.0 and 0.13.0

* update copyright

* reformat according to black format errors

* restore maintainers directive

* Update var/spack/repos/builtin/packages/py-elephant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* add dependency python 3.8+

* sorted dependencies

* sort dependencies from newest to oldest

* add deps for @master

* removed dependency for master, since it is included in 0.12.0:

* removed dependency for python 3.7+ , since 3.7+ is the lowest supported version anyway

* removed specific deps for master, since master is always newer than all stable releases

* updated numpy dependency for Elephant 0.12.0:

* Update var/spack/repos/builtin/packages/py-elephant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-elephant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* removed upper bounds for py-quantities, omitting v0.14.0

* add elephant v0.14.0

* update required quantities version

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 07:42:57 -07:00
Lydéric Debusschère
063c28e559
py-cleo: add versions 2.0.0 2.0.1; add maintainers (#40611)
* py-cleo: add versions 2.0.0 2.0.1; add maintainers

* py-cleo: add forgotten dependence

* py-cleo: update from review: remove preferred version, remove a dependence, fix py-rapidfuzz version

* py-cleo: deprecated version 1.0.0a5; add version 1.0.0; update dependences

* py-cleo: add version 2.1.0; update version range of dependences

* py-crashtest: add version 0.4.1, dependence of py-cleo

* py-cleo: update dependence

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-cleo: update dependence py-clikit

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-cleo: update dependence py-rapidfuzz

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* py-rapidfuzz: add version 2.2.0 dependence of py-cleo@2

* py-cleo: fix version range of py-crashtest

* py-rapidfuzz: fix dependences; add py-rapidfuzz-capi and py-jarowinkler

---------

Co-authored-by: LydDeb <lyderic.debusschere@eolen.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 08:28:56 -06:00
Hariharan Devarajan
31ec1be85f
Release DLIO Profiler Py 0.0.2 (#41127) 2023-11-18 07:58:56 -06:00
Erik Heeren
7137c43407
py-jsonpath-ng: version bump (#41078)
* py-jsonpath-ng: version bump

* py-jsonpath-ng: fix typo in version number
2023-11-18 07:54:50 -06:00
Erik Heeren
f474c87814
py-gitpython: version bump (#41079) 2023-11-18 07:53:55 -06:00
Juan Miguel Carceller
edf872c94b
py-pyh5py: reorder dependencies from newest version to oldest (#41137)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2023-11-18 07:48:34 -06:00
Michael Kuhn
223e5b8ca2
Fix invalid escape sequences (#41130)
Using Python 3.12 in a freshly cloned Spack repository results in
warnings such as this:
```
==> Warning: invalid escape sequence '\$'
==> Warning: invalid escape sequence '\('
==> Warning: invalid escape sequence '\.'
==> Warning: invalid escape sequence '\.'
```
These will turn into errors in 3.13, so fix them. All of them actually
do not need to be regexes, so convert them into normal strings.
2023-11-18 07:43:35 -06:00
Moritz Kern
cb764ce41c
Update py-quantities (#39201)
* add version 0.14.1

* formatting

* style checks

* fix style errors

* remove old versions

* fix typo

* style

* update maintainers directive

* sort dependencies from newest to oldest

* Update var/spack/repos/builtin/packages/py-quantities/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-quantities/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* sort dependencies from newest to oldest

* removed upper bounds for python version

* Update var/spack/repos/builtin/packages/py-quantities/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* remove dependency on Python 3.7 +, since 3.7 is the lowest supported version anyway

---------

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2023-11-18 07:12:58 -06:00
Brian Van Essen
9383953f76
Hydrogen package: avoid newer openblas on power (#41143) 2023-11-17 14:20:33 -08:00
Stephen Herbener
9ad134c594
Add cxxstd variant to ecflow, update with latest ecflow version (#41120)
* Added recent versions to ecflow/package.py, as well as added a cxxstd variant that is
needed to set BOOST_NO_CXX98_FUNCTION_BASE appropriately when building with C++17 standard.
* Fixed pep8 style error in the ecflow package.py script.
* Remov
* Removed cxxstd variant since the ecflow cmake configuration was already specifying
to use the c++17 standard for newer versions. The use of the BOOST_NO_CXX98_FUNCTION_BASE
define is now triggered by the ecflow version.
2023-11-17 13:34:17 -08:00
Mark Abraham
ec8bd38c4e
Permit packages that depend on Intel oneAPI packages to access sdk (#41117)
* Permit packages that depend on Intel oneAPI packages to access sdk

* Implement and use IntelOneapiLibraryPackageWithSdk

* Restore libs property to IntelOneapiLibraryPackage

* Conform to style

* Provide new class to infrastructure

* Treat sdk/include as the main include
2023-11-17 14:59:04 +00:00
Wouter Deconinck
81e73b4dd4
root: new version 6.30.00 (#41118)
* root: new version 6.30.00

There is a new release of ROOT, v6.30.00, with release notes at https://root.cern/doc/v630/release-notes.html.

In addition to some deprecations of build options, this updates the C++ standard to 17 or higher (well, 20), and increases the vc minimum version.

* vc: new version 1.4.4

* [@spackbot] updating style on behalf of wdconinc

---------

Co-authored-by: wdconinc <wdconinc@users.noreply.github.com>
2023-11-17 08:49:01 -06:00
Thomas Madlener
53c7edb0ad
lcio: Add latest tag 2.20.1 (#41102) 2023-11-17 08:24:43 -06:00
Massimiliano Culpo
54ab0872f2
py-archspec: add v0.2.2 (#41110) 2023-11-17 11:22:32 +01:00
Harmen Stoppels
1b66cbacf0
llvm: patch missing cstdint include (#41108)
* llvm: patch missing cstdint include
2023-11-17 10:17:25 +01:00
Kelly (KT) Thompson
a3d6714c8b
[doxygen] Add versions 1.9.7 and 1.9.8. (#41123)
* [doxygen] Add versions 1.9.7 and 1.9.8.
* Fix has for 1.9.8.
2023-11-16 19:44:17 -07:00
bk
da2e53b2ee
r-rlang: add v1.1.1, v1.1.2 (#41114) 2023-11-16 19:24:20 -07:00
Weiqun Zhang
3e060cce60
Update amrex maintainers (#41122) 2023-11-16 15:06:54 -08:00
Wouter Deconinck
00df2368a3
clhep: new version 2.4.7.1 (#41113) 2023-11-16 15:57:29 -07:00
Massimiliano Culpo
ef689ea586
libgcrypt: add v1.10.3 (#41111) 2023-11-16 15:46:44 -07:00
Thomas Madlener
4991a60eac
podio: Add latest tag 0.17.3 (#41103) 2023-11-16 14:41:24 -08:00
Tim Wickberg
67c2c80cf4
Use preferred capitalization of "Slurm" (#41109)
https://slurm.schedmd.com/faq.html#acronym
2023-11-16 22:40:54 +00:00
Massimiliano Culpo
0cde944ccc
Improve the error message for deprecated preferences (#41075)
Improves the warning for deprecated preferences, and adds a configuration
audit to get files:lines details of the issues.

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2023-11-16 23:30:29 +01:00
Adam J. Stewart
1927ca1f35
Update PyTorch ecosystem (#41105) 2023-11-16 10:59:13 -08:00
Adam J. Stewart
765df31381
py-lightning: add v2.1.2 (#41106) 2023-11-16 10:52:21 -08:00
Sinan
ba091e00b3
package/lemon: improve (#40971)
* package/lemon: improve
* fix bug
* final improvements
* use f strings for boolean options, add soplex as TODO
* leave +coin as TODO
* depends on bzip2 when +coin
* tidy

---------

Co-authored-by: sbulut <sbulut@3vgeomatics.com>
Co-authored-by: Sinan81 <Sinan81@users.noreply.github.com>
2023-11-16 10:36:29 -08:00
afzpatel
8d2e76e8b5
enable rocAL and add MIVisionX tests (#39630)
* initial commit to enable rocAL and add MIVisionX tests
* fix styling
* updated checksum for libjpeg patches
* update for 5.6
* use satisfies for checking spec version
2023-11-16 10:29:00 -08:00
Martin Aumüller
0798bd0915
Updates for Ospray@3.0.0 (#41054)
* rkcommon: add v1.12.0
* openimagedenoise: add v2.1.0
* openvkl: 1.3.2 only compatible with rkcommon@:1.11
* openvkl: add v2.0.0
* ospray: add v3.0.0
* paraview: not yet compatible with ospray@3
2023-11-16 10:04:02 -08:00
Massimiliano Culpo
1e1cb68b84
Add audit check to spot when= arguments using wrong named specs (#41107)
* Add audit check to spot when= arguments using named specs

* Fix package issues caught by the new audit
2023-11-16 14:19:05 +01:00
Auriane R
495252f7f6
Add patch for libffi@3.4.4 since failing to install using clang@15 (#41083) 2023-11-16 10:04:46 +01:00
Sergio Sánchez Ramírez
66dea1d396
Update package.py (#41092) 2023-11-15 17:38:28 -07:00
Daniel Arndt
2f4046308f
deal.II: Require at least taskflow 3.4 (#41095) 2023-11-15 16:16:53 -08:00
Alberto Sartori
95321f4f3a
justbuild: add version v1.2.3 (#41084) 2023-11-15 15:57:06 -08:00
Satish Balay
6eae4b9714
taskflow: add v3.6.0 (#41098) 2023-11-15 15:20:38 -08:00
Harmen Stoppels
2f24aeb7f6
docs: packages config on separate page, demote bootstrapping (#41085) 2023-11-15 15:49:16 +00:00
Rocco Meli
1d30e78b54
cp2k: add hipfft and hipblas explicitly (#41074) 2023-11-15 01:44:38 -07:00
Jonathon Anderson
b3146559fb
hpctoolkit: Add depends on autotools for @develop (#41067) 2023-11-15 09:19:02 +01:00
moloney
84e33b496f
mrtrix3: fix some issues w/ 3.0.3 and add 3.0.4 (#41036) 2023-11-15 09:13:21 +01:00
Jonathon Anderson
de850e97e8
libevent: call autoreconf directly instead of via autogen.sh (#41057) 2023-11-15 09:11:49 +01:00
kwryankrattiger
c7157d13a8
ParaView: Add release candidate 5.12.0-RC1 (#41009)
* ParaView: Add release candidate 5.12.0-RC1

* [@spackbot] updating style on behalf of kwryankrattiger
2023-11-15 08:27:27 +01:00
Gerhard Theurich
d97d73fad1
esmf: add v8.6.0 (#41066) 2023-11-14 22:23:37 -07:00
Julien Cortial
9792625d1f
Fix typo in mumps recipe (#41062)
* Fix typo in mumps recipe
* Adopt mumps package
2023-11-14 10:43:40 -07:00
Satish Balay
43a94e981a
xsdk: add version 1.0.0 (#40825)
xsdk: add +sycl variant - with amrex, arborx, ginkgo, petsc, sundials

xsdk: add +pflotran variant

xsdk: enable hypre+rocm

xsdk: enable superlu-dist for GPU - but use trilinos~superlu-dist [as that breaks builds]

xsdk: dealii: disable oce as it can cause intel-tbb-2017.6 to be picked up for some builds (for ex: gcc=13) and result in subsequent build failures
2023-11-14 11:00:19 -06:00
Thomas-Ulrich
ee1a2d94ad
bison: conflict %oneapi due to possible miscompilation (#40860) 2023-11-14 17:58:17 +01:00
Harmen Stoppels
25eca56909
gmake: fix bootstrap (#41060) 2023-11-14 17:44:48 +01:00
Massimiliano Culpo
2ac128a3ad
Add papyrus to the list of broken tests (#40923)
* Disable papyrus in the neoverse v1 pipeline
   See https://gitlab.spack.io/spack/spack/-/jobs/8983875
   The job is hanging on tests for 6 hrs.
* Add papyrus to broken tests instead of removing it
2023-11-14 07:37:29 -08:00
Massimiliano Culpo
1255620a14
Fix infinite recursion when computing concretization errors (#41061) 2023-11-14 14:44:58 +01:00
Harmen Stoppels
18ebef60aa
R: cleanup recipe and fix linking to lapack libraries (#41040) 2023-11-14 14:44:36 +01:00
Dennis Klein
6fc8679fb4
fairmq: add v1.8.1 (#41007) 2023-11-14 12:55:09 +01:00