* Add py-wub, with supporting fixes
- add py-wub
- add py-pycmd because py-wub needs it
- update py-statsmodels, which needs at least v0.9.0 to work with
python3.7 because cython.
* Update based on Adam's comments
* Fix dependency types for py-six in py-wub
* statsmodels tests fail, update comment w/ Issue #
The statsmodels tests weren't run in the previous version of the
package. If I enable them, the fail.
Update the package comment with the statsmodels issue I opened to
track the problem:
https://github.com/statsmodels/statsmodels/issues/6263
* Update dependency types in py-wub/package.py
* flake8 cleanups
* Make statsmodels tests work
- need to use patsy@0.5.1:
- need to run the tests from within the build/lib* dir
* Add mg, a gnu-emacs like fork of microemacs
* Use Package, since not really an Autotools package
Switch from AutotoolsPackage to Package. Even though mg has a
configure script, it's not really an Autotools package.
* Need to also provide --prefix to configure
* Some packages (e.g. mpfr at the time of this patch) can have patches
with the same name but different contents (which apply to different
versions of the package). This appends part of the patch hash to the
cache file name to avoid conflicts.
* Some exceptions which occur during fetching are not a subclass of
SpackError and therefore do not have a 'message' attribute. This
updates the logic for mirroring a single spec (add_single_spec)
to produce an appropriate error message in that case (where before
it failed with an AttributeError)
* In various circumstances, a mirror can contain the universal storage
path but not a cosmetic symlink; in this case it would not generate
a symlink. Now "spack mirror create" will create a symlink for any
package that doesn't have one.
* Add process to determine aarch64 microarchitecture
* add microarchitectures for thunderx2 and a64fx
* Add optimize flags for gcc on aarch64 family processors thunderx2 and a64fx.
* Add optimize flags for clang on aarch64 family processors thunderx2 and a64fx
* Add testing for thunderx2 and a64fx microarchitectures
* Make relative binaries relocate text files properly
* rb strings aren't valid in python 2
* move perl to new interface for setup_environment family methods
* fix metis src dl url
* update ascent, vtk-h and vtk-m recipes
* update conduit package
* fix vtk-m shas
* mfem conduit fix
* use vtk-h develop
* fix issue with stripped include paths in mfem
* more metis fixes
* simpler fix for mfem conduit include issue
* finish mfem changes
* pin to cmake 3.14, since we hit cuda issues with 3.15
* add rtd theme as dep for ascent
* add vtk-h 0.5.0 release, update ascent to use it
* add ascent 0.5.0 release
* fix cmake pin to allow all vers of 3.14
* fix format string error in mfem pkg
* review fixes for mfem pkg
* review fixes for vtk-h and vtk-m packages
* address review comments for ascent pkg
* changing default off of develop broke downstream use
* revert prefed
* guile package: Handling the threads option.
Currently guile by default tries to compile its thread variant.
However, the threaded version can only be compiled if bdw-gc is
compiled with some threads support. Currently, the default
compilation of the bdw garbage collector is compiled without any
thread support resulting in a compilation error.
I have changed the the default guile compilation to the non-threaded
version. I have also added the appropiated options for the bdw-gc
compilation in case the user prefers the threaded variant.
* guile package(flake8): fixed identation issues
* remove reference to `spack.store` in method definition
Referencing `spack.store` in method definition will cache the `spack.config.config` singleton variable too early, before we have a chance to add command line and environment scopes.
Add a configuration option to suppress gpg warnings during binary
package verification. This only suppresses warnings: a gpg failure
will still fail the install. This allows users who have already
explicitly trusted the gpg key they are using to avoid seeing
repeated warnings that it is self-signed.
* z3:
* Fixed python dependency to always be required.
* bugfix about fallthrough annotation.
* z3: Add patch for before ver.4.4.1.
* Update var/spack/repos/builtin/packages/z3/package.py
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
* Mark compiler/version conflict for CMake
Intel 14 lacks some C++11 features needed to compile new versions of
cmake.
```
/tmp/s3j/spack-stage/spack-stage-cmake-3.15.5-46lgp4ybhopy2p4rr66rxnew5iaddvmg/spack-src/Source/
cm_static_string_view.hxx(28): error: expected an operator
friend static_string_view operator"" _s(const char* data, size_t
^
```
* Mark compiler/version conflict for icu4c
With Intel 14.0.4 on Linux for icu4c 60.1 and higher:
```
locid.cpp(1156): error #1140: a using-declaration may not name a constructor or destructor
using KeywordEnumeration::KeywordEnumeration;
```
* Mark compiler/version conflict for nasm
Error installing `nasm@2.14.02%intel@14.0.4`:
```
In file included from nasmlib/crc64.c(35):
./include/nasmlib.h(116): error: expected a ";"
fatal_func nasm_assert_failed(const char *, int, const char *);
```
* Mark compiler/version conflict for bison
Installing `bison@3.4.2%intel@14.0.4`:
```
In file included from /tmp/s3j/spack-stage/spack-stage-bison-3.4.2-
uzjszv4owvqsymjpxtxvvegfavc6k5my/spack-src/lib/quotearg.c(33):
/tmp/s3j/spack-stage/spack-stage-bison-3.4.2-uzjszv4owvqsymjpxtxvvegfavc6k5my/spack-src/lib/
xalloc.h(51): warning #303: explicit type is missing ("int" assumed)
extern _Noreturn void xalloc_die (void);
```
* Mark compiler/version conflict for icu4c
With `icu4c@60.1%intel@16.0.4` and `icu4c@64.1%intel@16.0.4`:
```
In file included from ucurr.cpp(26):
static_unicode_sets.h(130): error #913: invalid multibyte character sequence
{POUND_SIGN, u'£'},
^
```
* Change conflict comments into messages
