Commit graph

15015 commits

Author SHA1 Message Date
Adam J. Stewart
dd8afca9d8
Add Checksum for 1.4.1.4 Release (#15363)
* Add Checksum for 1.4.1.4 Release

Add checksum for 1.4.1.4 release.  Mark myself as maintainer.  List develop version.

* Update var/spack/repos/builtin/packages/libhio/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-05 17:28:42 -06:00
Adam J. Stewart
aa0ab13a73
Python: add 3.8.2 (#15365) 2020-03-05 17:02:13 -06:00
Adam J. Stewart
656d1ac5ab
Update legion versions (#15364) 2020-03-05 16:28:35 -06:00
eugeneswalker
8cce884078
unifyfs: add patch to fix #15292 (#15315)
It was reported that UnifyFS had a bug with the --enable-mpi-mount
config option, which corresponds to the auto-mount variant. This bug
was fixed in the UnifyFS dev branch, however remains broken for the
0.9.0 version.

This adds a patch to the unifyfs package to fix the auto-mount
variant when installing with version 0.9.0.

This also removes the openssl dependency as unifyfs does not directly
depend on it. This was said to be a non-explicit dependency in #15258.
However, if it is needed, it is likely a non-explicit dependency of
one of unifyfs's dependencies and should be added there.

Fixes: #15292
2020-03-05 13:54:25 -08:00
Adam J. Stewart
da853a5daa
lammps: add most recent stable release (#15335)
* lammps: add most recent stable release

* Update var/spack/repos/builtin/packages/lammps/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-03-05 15:19:18 -06:00
Patrick Gartung
820d147e08
Allow buildcaches keys to find public keys on the e4s mirror (#15361) 2020-03-05 15:15:40 -06:00
Adam J. Stewart
28a75a4c35
lastz: declare ch as type int (#15350) 2020-03-05 15:06:20 -06:00
Adam J. Stewart
fde1b2088a
update maintainers for bmi, darshan, and margo (#15356)
Signed-off-by: Phil Carns <carns@mcs.anl.gov>
2020-03-05 15:00:52 -06:00
Axel Huebl
24e6155bac
New package: fd-find (#15344)
* New package: fd-find

Add package for fd-find:

    A simple, fast and user-friendly alternative to 'find'.

* Update copyright date
2020-03-05 10:14:40 -08:00
Axel Huebl
3a8800b6b4
New package: ripgrep (#15343)
Add package for ripgrep:

    ripgrep is a line-oriented search tool that recursively searches
    your current directory for a regex pattern.  ripgrep is similar to
    other popular search tools like The Silver Searcher, ack and grep.
2020-03-05 10:14:18 -08:00
Adam J. Stewart
9940392c2b
New package: opensubdiv (#15310)
* [opensubdiv] created stub for opensubdiv

* [opensubdiv] added homepage and description

* [opensubdiv] removed boilerplate

* [opensubdiv] working on dependencies and variants

* [opensubdiv] fixed syntax error

* [opensubdiv] defined spec

* [opensubdiv] added dev version

* [opensubdiv] building on CudaPackage

* [opensubdiv] always build with open gl and depends_on('gl')

* [opensubdiv] applying cuda flags

* [opensubdiv] worked on doc variant

* [opensubdiv] added some x11 libraries

* [opensubdiv] depends on glfw

* [opensubdiv] locating glew

* [opensubdiv] added openmp variant

* [opensubdiv] flake8 fixing

* [opensubdiv] fixed develop version name

* [opensubdiv] fixed description to not need @
2020-03-05 10:52:20 -06:00
Massimiliano Culpo
752092f46a
Correct pytest.raises matches to match (#15346) 2020-03-05 11:16:02 +01:00
Massimiliano Culpo
d9626cca50
Bugfix: resolve StopIteration message attribute failure (#15341)
Testing the install StopIteration exception resulted in an attribute error:

AttributeError: 'StopIteration' object has no attribute 'message'

This PR adds a unit test and resolves that error.
2020-03-05 10:26:50 +01:00
Adam J. Stewart
9edf812745
py-matplotlib: add 3.2.0 (#15349) 2020-03-04 21:56:00 -06:00
Peter Scheibel
c5dc4a722e
xgboost: add version 0.90 (#15321) 2020-03-04 18:19:03 -08:00
Axel Huebl
1757ec9eae
New version of simplejson (#15325) 2020-03-04 20:34:06 -05:00
Adam J. Stewart
b813887585
ADIOS2: Cleanup, Development Branch Name (#15334)
* ADIOS2: Version `master`

Rename branch version to supported, real development branch `master`.
The old name is legacy Spack when alternative development branch
names were not yet supported.

* ADIOS: Simplify via spec Variable

use the already defined local variable `spec` to shorten
lines
2020-03-04 19:24:16 -06:00
Adam J. Stewart
136a4897b7
ADIOS2: Testing Depends on Python (#15336)
Add the python dependency and CMake hints when build with tests.
`spack install --tests=root adios2`
2020-03-04 19:23:12 -06:00
Patrick Gartung
e2b3d52999
Add function replace_prefix_nullterm for use on mach-o rpaths. (#15347)
This recovers the old behavior of replace_prefix_bin that was
modified to work with elf binaries by prefixing os.sep to new prefix
until length is the same as old prefix.
2020-03-04 19:21:15 -06:00
Adam J. Stewart
d7f84c738e
Fixed the sha has for 1.3.3. (#15331) 2020-03-04 19:19:16 -06:00
Adam J. Stewart
1973d1c53e
libfabric: default 1.8.1 (#15337)
Since 1.9.0 is broken for Darwin, which impacts many developers, and
the fix is still a RC, let's keep the previous release as default.

This avoids distruption for OSX developers and CI.
2020-03-04 19:11:54 -06:00
Peter Scheibel
cf7dbbf65c
Remove DB conversion of old index.yaml (#15298)
Removed the code that was converting the old index.yaml format into
index.json. Since the change happened in #2189 it should be
considered safe to drop this (untested) code.
2020-03-04 16:39:10 -08:00
Patrick Gartung
3ea0e91533
use os.sep instead of null byte to pad replacement paths in binaries (#15338)
* use os.sep instead of null byte to pad replacement paths in binaries

* Prefix the pading os.sep's
2020-03-04 17:15:09 -06:00
Adam J. Stewart
8eda1db50f
precice: Add version 2.0.1 (#15318) 2020-03-04 13:19:41 -06:00
Adam J. Stewart
60439a5040
pgi-19.10 update version (#15330) 2020-03-04 13:18:46 -06:00
Adam J. Stewart
3be3b2d0e3
gcc: Add 8.4.0 (#15323) 2020-03-04 13:18:02 -06:00
Adam J. Stewart
1ade506f54
Add extra version of py-contextlib2 (#15322) 2020-03-04 13:17:09 -06:00
Adam J. Stewart
5cfd862f47
suite-sparse: fix installation for v5.X (#15326)
fixes #15184

GraphBLAS depends on m4 according to CMake error message
Do not use INSTALL= when compiling the library
2020-03-04 13:16:42 -06:00
Christoph Junghans
32a0f3274f
ecp-proxy-apps: version bump (#14680) 2020-03-04 10:45:23 -07:00
Sergey Kosukhin
b472c13803
Fix FCFLAGS handling for Autotools packages (#14788)
Spack's fflags are meant for both f77 and fc. Therefore, they must
be passed as FFLAGS and FCFLAGS to the configure scripts of
Autotools-based packages.
2020-03-03 13:13:38 -08:00
sknigh
370e7c211d
intel-xed does not support python>3.7 (#15308) 2020-03-03 13:38:55 -06:00
sknigh
cec341594d
Added UQTk package (#14801)
* added UQTk package

* Add missing expat dependency to uqtk
2020-03-03 12:50:20 -06:00
Mark W. Krentel
fddb3f291c
elfutils: increase connect timeout (#15262)
Increase the connect timeout for elfutils to 60 sec.  Elfutils (and
bzip2) tar files are on sourceware.org which is often slow to respond.
2020-03-03 11:27:57 -06:00
Brian Van Essen
f83d98a62d
Protobuf's cmake environment does not properly handle being exported (#15293)
and found when using the RelWithDebInfo build type.  Change protobuf
to only support Release and Debug build types.
2020-03-03 11:27:01 -06:00
Mathias Anselmann
d6b0cf75ed
cherry-picking global ordinal type variant from https://github.com/spack/spack/pull/14215 and setting dealii to GO int, to make it compile again (#15288)
Co-authored-by: Andrey Prokopenko <andrey.prok@gmail.com>
2020-03-03 11:26:20 -06:00
Dr. Christian Tacke
c4237e4a10
fairlogger: add version, other improvements (#15300)
* @develop needs the full git repo to use "git describe"
  properly

* If not specifying the cxxstd variant, let cmake use its
  default

* Improve fmt dependencies: fairlogger < 1.6.2 does not
  work with fmt >= 6.

* Small other stuff
2020-03-03 11:24:37 -06:00
Patrick Schratz
71855707ef
Update package.py (#15299) 2020-03-03 11:02:02 -06:00
Jennifer Herting
a237781c48
Created package glfw (#15296)
* Created stub

* added description and homepage

* added dependencies

* removed extra boilerplae

* switched to the pkgconfig provider
2020-03-03 11:01:29 -06:00
Sergey Kosukhin
2d1592cca7
OpenMPI: patch for NAG. (#15301) 2020-03-03 11:00:27 -06:00
Mathias Anselmann
518d1439c7
Suite sparse compilation fix for 5.7.0 and 5.7.1 (#15289)
Suite-sparse 5.7.0 and 5.7.1 need separate make and make install run to be able to compile, too
2020-03-03 12:06:58 +01:00
George Hartzell
dc4e43682c
Tmux should look for tinfo in -ltinfo (#15282)
Just `depend_on('ncurses')`, pkgconfig seems to cause the right thing
to happen if the package is built +termlib or ~termlib (tested both
ways on a CentOS 7 system).

Additional details in: https://github.com/spack/spack/issues/15281

Tested by building all of the releases of tmux on a CentOS 7 box.
2020-03-03 09:12:06 +01:00
Dr. Christian Tacke
b43812c7c4
boost: Add "container" library (#14878)
"container" is partly a misnomer, as it's realy
the extended allocators part of container.

But every part calls it container, so we do too.
2020-03-02 19:48:07 -06:00
Erik Schnetter
059203b2fd
amrex: New version 20.03 (#15294) 2020-03-02 16:09:50 -06:00
Tamara Dahlgren
73f7301ec4
bugfix: ensure proper dependency handling for package-only installs (#15197)
The distributed build PR (#13100) -- did not check the install status of dependencies when using the `--only package` option so would refuse to install a package with the claim that it had uninstalled dependencies whether that was the case or not.

- [x] add install status checks for the `--only package` case.
- [x] add initial set of tests
2020-03-02 11:16:20 -08:00
Kai Torben Ohlhus
1db1ae6887
openblas: Add version 0.3.9. (#15287)
[OpenBLAS 0.3.9](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.9) was released.
2020-03-02 11:58:54 -06:00
Cody Melton
7df761564a
Qmcpack: new variant +afqmc (#14882)
* add preliminary afqmc support in qmcpack

* afqmc updates

* fix spack typos

* edit AFQMC to only allow up 3.7 or above

* added NCCL library support for AFQMC build

* add CMAKE args for BUILD_AFQMC_WITH_NCCL

* update for just AFQMC support. No AFQMC+GPU support

* remove nccl for afqmc

* flake8 whitespace fix
2020-03-02 11:58:33 -06:00
Gregory Lee
8a4f02fb2d
stat: new version 4.0.2 (#15290) 2020-03-02 09:51:28 -08:00
Sergey Kosukhin
e3b357ad87
Update flag_handler for 'netcdf-fortran'. (#14789)
* Update flag_handler for 'netcdf-fortran'.

* Refactoring.

* Enable old versions of netcdf-fortran for NAG.

* Disable parallel 'make check' for versions before 4.5.0.

* Fix shared libraries built with NAG instead of conflicting it.

* Add 'skosukhin' as a maintainer of 'netcdf-fortran'.
2020-03-02 08:40:37 -06:00
noguchi-k
aae59f4866
lastz: set compile commands for each compiler (#15284) 2020-03-02 08:05:31 -06:00
Glenn Johnson
c0032a3660
Update tcsh package (#15283)
This PR adds some fixes for the tcsh package.

- Adds new version
- adds list_url so fetching works for current and old tarballs
- sets ncurses dependency explicitly to `ncurses+termlib`

If `+termlib` is not set then it will link against the system libtinfo.
2020-03-01 22:00:57 -06:00