Commit graph

25351 commits

Author SHA1 Message Date
Steven Smith
ee63cfe0fd
New Package: EcoSLIM (#25975)
Co-authored-by: Steven Smith <Steven Smith>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-09-27 10:38:53 -07:00
psakievich
df9d1dd1cb
Correct path comparisons for fs view (#25891)
* Fix path comparisons in copy views

* Get correct permissions

* Set group id though os

Co-authored-by: Philip Sakievich <psakiev@sanida.gov>
2021-09-27 09:51:38 -07:00
jacorvar
33957f2745
add mantainer to bedops (#26141) 2021-09-27 16:23:50 +00:00
bernhardkaindl
0cc80f5118
spindle: It seems it needs mpi.h to compile, adding depends on mpi. (#26151)
Workaround this compile error for gcc by adding -Wno-narrowing for it:
spindle_logd.cc:65:76: error: narrowing conversion of '255' from 'int' to 'char'
spindle_logd.cc:65:76: error: narrowing conversion of '223' from 'int' to 'char'
spindle_logd.cc:65:76: error: narrowing conversion of '191' from 'int' to 'char'

spindle 0.8.1 wants to compile tests with mpi.h, newer versions need mpicc,
thus add: depends_on("mpi"). Spindle supports the --no-mpi to disable MPI.
2021-09-27 08:58:47 -07:00
Edward Hartnett
ffedc3637c
added NOAAs UPP package (#26198) 2021-09-27 08:56:05 -07:00
Adam J. Stewart
4d3becdfd9
py-torch: add v1.9.1 (#26159) 2021-09-27 09:30:47 -05:00
bernhardkaindl
4a130b9185
perl: Fix test case bug perl#15544: Don't fail with PATH >1000 chars (#26245)
Fix the perl test case bug Perl/perl5#15544
Variable PATH longer than 1000 characters (as is usual with spack) fails a perl test case
The fix is: Don't test PATH in testcase perlbug.t
Fixes `spack install --test=all` for specs triggering a build and test of perl!
2021-09-27 15:18:36 +02:00
Manuela Kuhn
2acfe55b74
exempi: fix expat dependency (#26221)
* exempi: fix expat dependency and fix test with --test=root

Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-09-27 14:52:23 +02:00
iarspider
8710353336
pythia8: update to v8.306, change url, set environment variables for dependents (#26255) 2021-09-27 09:05:51 +00:00
Jen Herting
514d04c8f1
New package: r-klar (#25390) 2021-09-27 02:53:03 +00:00
Jen Herting
87e91178a6
New package: r-questionr (#25395) 2021-09-26 21:35:24 -05:00
Manuela Kuhn
e90534d45e
py-python-gitlab: add 2.10.1 (#26229) 2021-09-27 01:24:05 +02:00
Wouter Deconinck
caa33b7b05
[acts] eigen is not only a build dependency (#26257)
The ActsConfig.cmake includes a `find_dependency(Eigen3)` line. Requiring depends_on type='build' does not expose eigen to dependents during their build.

Ref: https://github.com/acts-project/acts/blob/v13.0.0/cmake/ActsConfig.cmake.in#L59
2021-09-27 01:23:44 +02:00
lorddavidiii
8fa6597d43
cfitsio: add version 4.0.0 (#26218) 2021-09-27 01:18:09 +02:00
Seth R. Johnson
7e2fc45354
trilinos: default gotype=long_long (#26253)
"Long long" is the default type when building trilinos on its own, and
many downstream packages (both in and out of spack) rely on it. E4S
already sets this explicitly to long_long.
2021-09-26 16:51:23 +02:00
Desmond Orton
3e7cee27d7
masurca: add versions up to v4.0.5 (#26171)
Co-authored-by: las_djorton <las_djorton@babybuild.las.iastate.edu>
2021-09-26 15:53:59 +02:00
Wouter Deconinck
798ef2bdb0
vtk: depends_on freetype @:2.10.2 through @:9.0.1 only (#26180)
The issues in https://gitlab.kitware.com/vtk/vtk/-/issues/18033 were fixed in:
- dae1718d50
- 31e8e4ebeb

These fixes are in vtk@9.0.2 https://github.com/Kitware/VTK/releases/tag/v9.0.2 and beyond.
2021-09-26 15:52:51 +02:00
Brian Van Essen
cc658c5f1e
lbann: add support for building with the ONNX C++ library (#26130) 2021-09-26 15:50:09 +02:00
Valentin Volkl
1f972f90c8
podio, edm4hep: fix tests (#26116)
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2021-09-26 15:49:10 +02:00
Brian Van Essen
123c105771
onnx: fix python version in environments (#26131)
When using the ONNX package inside of an environment that specifies a
python3 executable, it will attempt to use a system installed
version.  This can lead to a failure where the system python and the
environment python don't agree and the system python ends up with an
invalid environment.  Forces ONNX to use the same version of python as
the rest of the spec.

Co-authored-by: Greg Becker <becker33@llnl.gov>
2021-09-26 15:48:45 +02:00
Brian Van Essen
b909560ed5
Added CMake command to export compiler directories to support emacs LSP mode. (#26118) 2021-09-26 15:47:46 +02:00
Paul Spencer
0e6e9c23a1
libsignal-protocol-c: new package (#26121)
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2021-09-26 15:47:15 +02:00
Hadrien G
a99d8463ac
diffutils: Add v3.8, fixes an incompatibility with newer glibc (#26237) 2021-09-26 12:30:16 +02:00
Harmen Stoppels
e76462da38
Compiler conflict in umpire as a range (#26161) 2021-09-26 12:28:30 +02:00
Harmen Stoppels
fbda52d1b0
Curl 7.79.0 (#26075) 2021-09-26 12:28:05 +02:00
Manuela Kuhn
ab85961e73
py-datalad-hirni: add new package (#26227) 2021-09-26 09:20:36 +00:00
Nikolay Simakov
72cabcf454
enzo: build extra tools, add optimization variant (#25401)
* added inits and rings tools to be built
* added opt variant
2021-09-26 10:59:06 +02:00
iarspider
344b37730b
jemalloc: add more variants (#26144) 2021-09-26 10:56:27 +02:00
bernhardkaindl
5967a10432
candle-benchmarks: depend_on()s: Fix obsoleted and renamed variants (#26250)
Fix solving/concretizing candle-benchmarks:
py-theano: The requested variant +gpu us now named +cuda
opencv: The requested variants +python and +zlib are now fixed deps
2021-09-26 10:37:01 +02:00
bernhardkaindl
6ccda81368
log_parser.py: Find failed test case messages in error logs (#25694)
- Match failed autotest tests show the word "FAILED" near the end
- Match "FAIL: ", "FATAL: ", "failed ", "Failed test" of other suites
- autotest "   ok"$ means the test passed, independend of text before.
- autoconf messages showing missing tools are fatal later, show them.
2021-09-26 10:35:04 +02:00
bernhardkaindl
34415f6878
swiftsim: Fix build with version bump and depends_on('gsl') (#26166)
swiftsim-0.7.0 didn't build because of a configure script issue and
more. Fix the build by a version bump and adding `depends_on('gsl')`.
2021-09-26 10:32:44 +02:00
bernhardkaindl
a947680e37
dropwatch: make check starts a daemon which does not stop: Skip it (#26164)
dropwatch is a network packet drop checker and it's make check starts
a daemon which does not terminate.

- Skip this test to not block builds.
- Add depends_on('pkgconfig', type='build')
  It is needed in case the host does not have pkg-config installed.
- Remove the depends_on('m4', type='build'):
  The depends_on('autoconf', type='build') pulls m4 as it needs it.
2021-09-26 10:32:04 +02:00
bernhardkaindl
2154786b61
dnstop: needs ncurses and it forgot to add -ltinfo (#26163)
dnstop misses a depends('ncurses') and it needs
to link with libtinfo from ncurses as well.
2021-09-26 10:30:42 +02:00
bernhardkaindl
9a64a229a0
xfwp: Fix build using: env.append_flags('CPPFLAGS', '-D_GNU_SOURCE') (#26157)
Without -D_GNU_SOURCE, the build of xfwp has many compilation errors.
Example: io.c:1039:7: error: implicit declaration of function 'swab'
2021-09-26 10:29:43 +02:00
bernhardkaindl
7189a69c70
rivet: Fix of build and tests on Ubuntu 18.04 w/ version bump (#26152)
When using Ubuntu's gcc-8.4.0 on Ubuntu 18.04 to compile rivet-3.1.3,
compilation errors related to UnstableParticles(), "UFS" show up.

Compilation with this compiler is fixed in rivet-3.1.4, adding it.

Adding type='link' to the depends on 'hepmc' and 'hepmc' fixes
the tests to find libHepMC.so.4 in `spack install --tests=all`

Co-authored-by: Valentin Volkl <valentin.volkl@cern.ch>
2021-09-26 10:29:08 +02:00
bernhardkaindl
fee0831b63
acct: skip installcheck: fails checking if all progs have --help (#26093)
Checks if all programs support --help and --version but not all do.
2021-09-26 10:26:21 +02:00
bernhardkaindl
919a893c08
mountpointattr: Fix checksum of 1.1.1 and fix build(patch is only for 1.1) (#26087) 2021-09-26 10:25:50 +02:00
bernhardkaindl
91ce8354a2
cairo: pass tests: devs wrote that other people shouldn't attempt them (#26086)
The cairo test suite is huge, has many backends and the README states
that running and attempting to pass it is not a goal for normal users,
it has so many dependencies into the system, including fonts, that
passing it is not a goal realistically in reach soon:
Skip it, it takes far too long to be practical.
2021-09-26 10:25:26 +02:00
bernhardkaindl
c411779c51
libfuse: Fix build when meson doesn't get host's udev pkg (#26147)
Despite the patch disabling installation of rules, meson's setup
stage looks up the udev package to get `/lib/udev/rules.d`, but as
spack has no `systemd/udev` package, it would fail to build.

Fix such builds by passing `-Dudevrulesdir` and bump version to 3.10.5
2021-09-26 10:24:30 +02:00
Manuela Kuhn
17857083b0
py-datalad-container: add new package (#26222) 2021-09-26 10:18:17 +02:00
Manuela Kuhn
dbbc2879e5
py-datalad-neuroimaging: add new package (#26223) 2021-09-26 10:17:22 +02:00
Manuela Kuhn
d627026910
py-datalad-webapp: add new package (#26226) 2021-09-26 09:50:01 +02:00
Manuela Kuhn
3b323d6c90
py-datalad-metalad: add new package (#26225)
Added py-nose for import and a simple installtest from appveyor.yml

Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-09-26 07:44:18 +00:00
bernhardkaindl
7ca657aef6
libidl builds using flex and bison: Add them as build-depends (#26183) 2021-09-26 09:40:18 +02:00
Jen Herting
27e6032f73
New package: py-gpyopt (#26232)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
Co-authored-by: Bernhard Kaindl <bernhardkaindl7@gmail.com>
2021-09-26 07:34:18 +00:00
Adam J. Stewart
76ca57bb2f
py-scikit-learn: add v1.0 (#26243) 2021-09-26 08:33:58 +02:00
Jen Herting
56858eb34e
first build of py-doe2 a fork of py-doe (#26235)
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-09-26 08:12:40 +02:00
Carlos Bederián
b4b3b256bc
ucx: use bfd instead of lld with %aocc (#26254) 2021-09-26 04:47:07 +02:00
Jen Herting
3c14d130ca
New package: r-styler (#25399) 2021-09-25 20:50:22 +00:00
Sreenivasa Murthy Kolam
b56e1d1f6d
limit the amd_target_sram_ecc to rocm-3.9.0-4.0.0 (#26240) 2021-09-25 19:18:44 +00:00