Commit graph

21613 commits

Author SHA1 Message Date
Rémi Lacroix
ed695f3267
iq-tree: add v2.1.3 (#24235) 2021-06-11 02:19:27 -06:00
Hervé Yviquel
a83b75b878
extrae: fix import and issue with pthread (#24220) 2021-06-11 10:12:18 +02:00
Mark W. Krentel
eefcd3d00d
hpcviewer: add v2021.05 (#24225) 2021-06-11 10:11:06 +02:00
Rémi Lacroix
722376c201
mafft: add v7.481 (#24233) 2021-06-11 09:58:43 +02:00
Jen Herting
269615b9ca
tophat: set the C++ standard (#21737) 2021-06-11 09:54:18 +02:00
Nikolay Petrov
ec2d8a1571
Fixing provides directive for intel-oneapi-onedal package (#24108) 2021-06-11 09:47:27 +02:00
Jen Herting
c630594092
giblib: new package (#24249) 2021-06-11 09:43:39 +02:00
Marc Fehling
e291fa1b1a
p4est: use the official tarball release. (#24219) 2021-06-11 06:46:21 +00:00
Adam J. Stewart
8c7f94db1c
py-fiscalyear: add v0.3.2 (#24262) 2021-06-11 08:27:16 +02:00
Michael Kuhn
f7391c1970
iwyu: add 0.16 (#24258) 2021-06-10 19:28:26 -04:00
Carson Woods
5926056f3a
reframe: add v3.6.1, v3.6.2 (#24239) 2021-06-10 13:01:44 -06:00
Jen Herting
1c81438343
New package: py-python-xlib (#24150)
* [py-python-xlib] created template

* [py-python-xlib] added dependencies

* [py-python-xlib] Final cleanup

- added homepage
- added description
- removed fixmes

* [py-python-xlib] allowed newer versions of python
2021-06-10 12:58:21 -06:00
Peter Lindstrom
31bca57e89
zfp package: ensure openmp variant is processed (#24221)
* zfp: several package improvements

- add variants for build targets, language bindings, backends
- ensure selected variants are compatible with zfp version
- point to GitHub (not LLNL) tar balls
- add dependencies
- update link to homepage
- add maintainers

* zfp: address suggestions by Spack team

- use conflicts() instead of raising exceptions
- use define() and define_from_variant() where applicable

* Apply suggestions from code review

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>

* Fix ZFP OpenMP build.

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-06-10 10:25:46 -07:00
Jen Herting
9da1cb615f
New package: py-keyboard (#23636)
* [py-keyboard] created template

* [py-keyboard]

- updated homepage
- added dependency for OSX
- added description
- removed fixmes

* [py-keyboard] Until py-pyobjc can be created, specifying conflict with platform=darwin

* [py-keyboard] is verb
2021-06-10 16:26:44 +00:00
Olivier Cessenat
e4a79dab47
groff: add v1.22.4, update recipe (#24213)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-06-10 16:58:22 +02:00
Olivier Cessenat
fd5b13b7a4
uchardet: new release + lib image was not found on Mac OSX (#24212)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-06-10 16:50:03 +02:00
Sebastian Schmitt
31c0bcf346
Update py-setuptools-scm (#24217) 2021-06-10 07:31:17 -05:00
Seth R. Johnson
849943c63d
cairo: circumvent missing gtkdocize for autoconf 2.70+ (#23971) 2021-06-09 17:10:13 -06:00
Ryan May
47ef59c885
Bump MetPy to 1.0.1 (#23944) 2021-06-09 15:49:21 -06:00
mcuma
9c0fb86b48
openkim-models: fix typo in the latest version (#24209) 2021-06-09 20:21:12 +00:00
Robert Pavel
29c4d5901a
Update of Flecsi Spackage (#24106)
* Update of Flecsi Spackage

Update of flecsi spackage to reconcile differences between flecsi@1:1.9
and flecsi@2: for future support purposes

* Removing Unnecessary Conditional

Removing unused conditional. Initially the plan was to switch based on
version in `cmake_args` but this was not necessary as build system
variable names remained mostly the same and conflicts prevent the rest.

For the most part, if a variant is there it does not need to check
against what version of the code is being built.

* Updated CI To Reconcile Flecsi Changes

Updated CI to target flecsi@1.4.2 which best matches the previous
release version and reconciled change in variant name
2021-06-09 11:03:50 -07:00
Olivier Cessenat
0dce021f94
jbigkit: adding the library spec for dependents (#24103) 2021-06-09 10:14:28 +02:00
Olivier Cessenat
8f34a66502
texlive: setup dependent build environment (#24102) 2021-06-09 09:46:21 +02:00
Cameron Smith
7499212bc1
pumi: support building tests (#24202)
fix sub directory path to meshes git submodule
2021-06-08 18:28:34 -06:00
Ryan Mast
7e9ed7e56d
helics: Add version 2.7.1 (#24188) 2021-06-08 17:05:32 -07:00
snehring
75db07e674
texlive: update live version to 2021 (#24211) 2021-06-08 16:55:49 -07:00
Mark W. Krentel
968d393f6b
intel-tbb: explicitly set OS var and pass to TBB (#23852)
The common.inc script in TBB uses the environ var 'OS' to determine
the platform it's on.  On Linux, this is normally empty and TBB falls
back to uname.  But some systems set this to 'CentOS Linux 8' which is
descriptive, but not exactly what common.inc is looking for.

Instead, take the value from python and explicitly set OS to what TBB
expects to avoid this problem.
2021-06-08 17:06:16 -05:00
eugeneswalker
ac3b46fc95
e4s ci: re-enable veloc builds after recent fixes (#24190) 2021-06-08 14:10:44 -07:00
Massimiliano Culpo
fd03d539cc
mypy: add types-six to the list of installed packages (#24207)
See https://mypy-lang.blogspot.com/2021/05/the-upcoming-switch-to-modular-typeshed.html
for a broader explanation.
2021-06-08 20:46:25 +00:00
Scott Wittenburg
92bef1da6f
Pipelines: Fix default generated rebuild job script (#24185) 2021-06-08 14:33:45 -06:00
Vanessasaurus
3291be6cb1
singularity: add singularityce fork (#24201)
Since the two packages share a common history, the installation
procedure has been factored into a common base class.

Signed-off-by: vsoch <vsoch@users.noreply.github.com>
2021-06-08 21:31:18 +02:00
Teodor Nikolov
d0fdbc1ab2
[umpire] Fix missing header (#24198) 2021-06-08 21:17:51 +02:00
Adam J. Stewart
92be358582
Python: fix +tkinter+tix support (#23980)
* Tcl: fix TCLLIBPATH

* Fix TCL|TK|TIX_LIBRARY paths

* Fix TCL_LIBRARY, no tcl8.6 subdir

* Don't rely on os.listdirs sorting

For tcl and tk, we also install the source directory, so there are
two init.tcl and tk.tcl locations. We want the one in lib/lib64,
which should come before the one in share.

* Add more patches

* Fix dylib on macOS

* Tk: add smoke tests

* Tix: add smoke test
2021-06-08 12:45:04 -05:00
Massimiliano Culpo
f33c4e7280
ASP-based solver: permit to use virtual specs in environments (#24199)
Extracting specs for the result of a solve has been factored
as a method into the asp.Result class. The method account for
virtual specs being passed as initial requests.
2021-06-08 19:04:49 +02:00
Massimiliano Culpo
e321578bbe
ASP-based solver: reordered low priority optimization criteria (#24184)
Minimizing compiler mismatches in the DAG and preferring newer 
versions of packages are now higher priority than trying to use as 
many default values as possible in multi-valued variants.
2021-06-08 16:10:49 +02:00
Robert Mijakovic
a2e9a1b642
osu-micro-benchmarks: new version 5.7.1 (#23590) 2021-06-08 08:07:20 -06:00
Todd Gamblin
beed6047e8
macOS: add monterey as macOS version 12. (#24192) 2021-06-08 10:07:34 +00:00
Tamara Dahlgren
11fd88ee3c
Update stand-alone tests to use test stage work directory; also added expected ctest output (#24191) 2021-06-08 03:31:40 -06:00
Glenn Johnson
418db4e910
gatk: make r a variant (#24189)
According to the docs, r is needed for plotting, but plotting is
untested. In addition, the specific version requirement of java for gatk
could lead to multiple installations of r being triggered in an
environment. That might cause people to have to be deliberate about
java in a deployment. All in all, it seems that r is better as a
variant for gatk.
2021-06-08 03:08:10 -06:00
Chris Richardson
f231ae97f4
Changes for ufl and basix (#24187) 2021-06-08 03:07:38 -06:00
Tamara Dahlgren
e1bd3ae4db
biobambam2: update stand-alone tests to use test stage work directory (#24111) 2021-06-08 09:30:21 +02:00
Massimiliano Culpo
729d66a3f8
Fix brittle unit-tests on providers (#24186)
These tests were broken by #24176
2021-06-07 22:16:14 +02:00
Michael Kuhn
4d55203ce5
build_systems: Make autotools builds verbose (#24161)
This is also what our other build systems are doing.
2021-06-07 14:05:35 -04:00
Valentin Volkl
2bdeaa1b48
pkgconf: disable check due to missing dependencies (#24168) 2021-06-07 12:01:24 -06:00
Adam J. Stewart
3d0bad465b
Docs: fix missing backtick in Environments docs (#24109) 2021-06-07 19:05:09 +02:00
Valentin Volkl
506d5744aa
delphes: add v3.5.0 (#24101) 2021-06-07 19:04:34 +02:00
Tamara Dahlgren
026cf7aa30
Update stand-alone tests to use test stage work directory (#24110) 2021-06-07 18:11:10 +02:00
Harmen Stoppels
e12b030def
mpich: fix constraints in provides directives (#24176) 2021-06-07 09:16:56 -06:00
Michael Kuhn
057bf434ce
netdata: add v1.31.0 (#24158)
This also adds some missing dependencies for core functionality.
2021-06-07 17:13:49 +02:00
Glenn Johnson
004f86aab7
r-rpostgres: add new package (#22442) 2021-06-07 17:10:46 +02:00