Commit graph

13654 commits

Author SHA1 Message Date
iarspider
a254f7011e Fix py-notebook for Python2 (#14079)
* Fix py-notebook for Python2

* PEP-8 fix

* Update package.py

* Update package.py

* Syntax fix

* Update var/spack/repos/builtin/packages/py-notebook/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-11 14:04:33 -06:00
iarspider
34adebc7cf Fix py-hypothesis (#14084)
* Fix py-hypothesis

* Update package.py

* Update package.py

* Update package.py
2019-12-11 14:04:18 -06:00
Dan Lipsa
6f7a58b142 Fix constexpr for llvm 9.0 (#14095) 2019-12-11 14:03:57 -06:00
Adam J. Stewart
69a91b5b6b
Add grass 7.8.2 (#14115) 2019-12-11 14:00:38 -06:00
Brian Van Essen
ee0b9bfa5b Added new versions of hydrogen (#14103) 2019-12-11 12:23:25 -06:00
Michael Kuhn
927f496306 doxygen: Fix libiconv checks (#14106)
PR #10589 introduced a libiconv dependency to doxygen. This causes
problems on Linux systems, since the iconv symbols are included in libc,
which causes CMake to use the external header but not the external
library. Work around this by always using the external libiconv.
2019-12-11 12:22:59 -06:00
Glenn Johnson
f2979da2af Build xed CLI for the intel-xed package (#14114)
The xed CLI is handy, and can be gotten by building the examples in the
intel-xed package. This PR builds the examples and installs the xed CLI.
It would also be possible to install more of the example binaries if
someone thinks they are useful.
2019-12-11 12:13:27 -06:00
Mark Olesen
77482e102a openfoam relocated to https://develop.openfoam.com/Development/openfoam.git (#14101) 2019-12-11 12:12:30 -06:00
noguchi-k
b0a7c8487d diamond: fix narrowing error. (#14064)
* diamond: fix narrowing error

* diamond: fix patch

* diamond: add link to the patch source
2019-12-11 12:07:21 -06:00
iarspider
d4326038b9 Fix py-pkgconfig recipe (#14081)
* Fix py-pkgconfig recipe

* Update package.py

* Proper fix for py-pkgconfig
2019-12-11 12:06:18 -06:00
iarspider
bb3bae4bae Fix py-pathos source file extension (#14080)
* Fix py-pathos source file extension

* PEP-8 fix

* Add version 0.2.3 to spack

* Update package.py
2019-12-11 12:04:45 -06:00
iarspider
ec3d979899 Fix py-llvmlite (#14083)
* Fix py-llvmlite

* Update package.py

* Add llvmlite 0.29

* Update package.py
2019-12-11 12:03:48 -06:00
iarspider
5c2afd0535 Fix py-dill source archive extension (#14085)
* Fix py-dill source archive extension

* Add py-dill 0.2.7, remove extra str()

* Update package.py

* Update package.py

* Update package.py
2019-12-11 12:03:28 -06:00
Howard Pritchard
e7a03d07b6 llvm: fix for building llvm using Cray PE (#12734)
Signed-off-by: Howard Pritchard <hppritcha@gmail.com>
2019-12-11 11:51:44 -06:00
iarspider
3cd6ca02d2 Fix json-c package (#14087)
* Fix json-c package

* Fix PEP-8

* Update package.py

* Update package.py
2019-12-10 17:34:50 -06:00
iarspider
ec060f3d9c Fix libgeotiff dependency of gdal (#14089)
* Fix libgeotiff dependency of gdal

* Update package.py

* Fix typo

* Update package.py
2019-12-10 17:34:35 -06:00
Justin S
2c31776007 openmolcas: new package at 19.11 (#14099)
* openmolcas: new package at 19.11

* openmolcas: fill description

* openmolcas: rewrite using CMakePackage

* openmolcas: add py-six dep

* openmolcas: use setup_build_environment, setup_run_environment

* openmolcas: remove redundant cmake dep

* openmolcas: explicitly cast Executable to str
2019-12-10 17:33:52 -06:00
Greg Becker
917224cb3c pytest: add __init__ files for all test subdirs (#13889)
* pytest: add __init__ files for all test subdirs

* add licenses to empty files

* Fix Sphinx warning message about comment within docstring

* Further fixes to Sphinx docstring
2019-12-10 15:19:09 -06:00
iarspider
5b3b522861 Alternative locations for tclConfig and tkConfig (#14071)
* Alternative locations for tclConfig and tkConfig

* Fix PEP-8
2019-12-10 15:18:19 -06:00
Eric Berquist
33f603734d Update tmux to 3.0a (#14096)
* Add tmux@2.9 and tmux@3.0a

* Fix checksums
2019-12-10 15:06:21 -06:00
Massimiliano Culpo
59d222c172 Better error message when setting unknown variants during concretization (#13128)
fixes #13124
2019-12-10 11:21:45 -08:00
Christoph Junghans
34f0195de8 gromacs-2018.8: fix checksum (#14069) 2019-12-10 12:33:41 -06:00
iarspider
fb6d29adfa ROOT: +http variant doesn't require any external dependency (#14072) 2019-12-10 12:29:11 -06:00
iarspider
f96216cf40 Fix py-pyasn1 version for py-pyasn1-modules (#14076) 2019-12-10 12:26:16 -06:00
iarspider
122264609e Fix for DD4Hep build: can't find boost (#14091) 2019-12-10 11:58:52 -06:00
iarspider
dd67868ef6 More variants for cairo (#14092) 2019-12-10 11:58:37 -06:00
Simo Tuomisto
9e8204d075 openfoam-org: Adding openfoam-org versions 6 and 7. (#12859)
This commit adds openfoam-org versions 6 and 7. It also adding new variant for metis and fixes openfoam-org's old environment modification functions.
2019-12-10 09:42:01 -06:00
Mark W. Krentel
c627e5a6fc intel-tbb: fix and cleanup patch version ranges (#14053)
Recent commit e9ee9eaf (#13989) fixed testing version ranges inside
patch when clauses.  Previously, it was necessary to write all revs
individually for packages with multiple length version numbers (2019
and 2019.1).

This fixes the build for the old 2017.* versions.
2019-12-09 17:11:47 -06:00
Omar Padron
0592c58030
Follow up/11117 fixes and testing (#13607)
* fix docstring in generate_package_index() refering to "public" keys as "signing" keys

* use explicit kwargs in push_to_url()

* simplify url_util.parse() per tgamblin's suggestion

* replace standardize_header_names() with the much simpler get_header()

* add some basic tests

* update s3_fetch tests

* update S3 list code to strip leading slashes from prefix

* correct minor warning regression introduced in #11117

* add more tests

* flake8 fixes

* add capsys fixture to mirror_crud test

* add get_header() tests

* use get_header() in more places

* incorporate review comments
2019-12-09 17:23:33 -05:00
Greg Becker
da9a562182 environments: allow 'add' command to add virtuals (#13787)
This PR allows virtual packages to be added to the specs list using
the add command.

Virtual packages are already allowed in named lists in spack
environments/stacks, and they are already allowed in the specs list
when added using the yaml directly.
2019-12-09 12:23:03 -08:00
Adam J. Stewart
23faffa2d0
TensorFlow: don't override HOME env var (#14054) 2019-12-09 11:22:57 -06:00
Matt Larsen
919a5421b7 fix incorrect gpu arch map for vtk-m package (#14057) 2019-12-09 11:18:51 -06:00
Andras Wacha
b33b8a3e29 Apply URLFetchStrategy to ftp:// and ftps:// url schemes (#13939)
* Apply URLFetchStrategy to ftp:// and ftps:// url schemes

* Corrected trailing whitespace error
2019-12-09 11:18:08 -06:00
George Hartzell
1d06949306 Tuneup docs re setting up sphinx for building docs (#14005)
I have, more than once, tried to install the list of things that need
to build the docs, only to discover that the list doesn't use Spack's
package names.  I'm tired of facepalming....

While I was there I touched up the prose about activating the new
Python packages; activating a python package doesn't add anything to
your PYTHONPATH, it links things into a directory that's *already* on
your PYTHONPATH.  Note that this all presupposes that you're using
that same python....
2019-12-08 16:22:25 -06:00
Adam J. Stewart
aa8d5d2e8c
cbtf-krell: fix missing dependencies (#14021) 2019-12-08 15:51:04 -06:00
Adam J. Stewart
2266aab5c5
Add new r-condop package (#14050) 2019-12-08 09:29:51 -06:00
Adam J. Stewart
c72568d01b
Add new r-earth package (#14049) 2019-12-08 09:06:53 -06:00
Adam J. Stewart
bf9661f18a
Add new r-plotmo package (#14048) 2019-12-08 09:06:37 -06:00
Adam J. Stewart
0c1599403d
Add new r-teachingdemos package (#14047) 2019-12-08 09:06:20 -06:00
Adam J. Stewart
cb258daf88
Add new r-graphlayouts package (#14046) 2019-12-08 09:06:04 -06:00
Adam J. Stewart
4593b7b693
Add new r-tidygraph package (#14045) 2019-12-08 09:05:46 -06:00
Adam J. Stewart
3547776921
py-torch: comment out non-existing deps (#14044) 2019-12-08 09:05:21 -06:00
Adam J. Stewart
aca67581e8
Add new py-requests-mock package (#14043) 2019-12-08 09:05:04 -06:00
Adam J. Stewart
99d2bcf64e
py-luigi: fix test dependencies (#14042) 2019-12-08 09:04:45 -06:00
Christoph Junghans
16a61d1422 elpa: port to microarch (#13655)
* elpa: port to microarch

* flake8

* Update package.py

* Update var/spack/repos/builtin/packages/elpa/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2019-12-08 09:03:59 -06:00
Adam J. Stewart
4e24c4ca5f
Add new py-pytest-mypy package (#14041) 2019-12-08 00:10:46 -06:00
Adam J. Stewart
4fb03f7222
Add new py-sphinxcontrib-issuetracker package (#14040) 2019-12-08 00:10:32 -06:00
Adam J. Stewart
8d21e39f00
py-python-htmlgen -> py-htmlgen (#14039) 2019-12-08 00:10:17 -06:00
Adam J. Stewart
fdc3176920
Add new py-asserts package (#14038) 2019-12-08 00:10:02 -06:00
Adam J. Stewart
4f7c28e9cd
py-brian2: py-nosetests -> py-nose (#14037) 2019-12-07 23:21:27 -06:00