Commit graph

19462 commits

Author SHA1 Message Date
Adam J. Stewart
c950f4a4ff
py-numpy: add v1.20.0 (#21409) 2021-01-31 06:28:21 +01:00
Toyohisa Kameyama
c175c05af9
quantum-expresso: fix for Fujitsu compiler (#21368) 2021-01-29 17:36:58 -08:00
Harmen Stoppels
371247c14a
Fix https://github.com/spack/spack/pull/21391#issuecomment-769961025 (#21397) 2021-01-29 17:21:56 -08:00
Massimiliano Culpo
13ac7198d3
clingo: added a package with option for bootstrapping clingo (#20652)
* clingo/clingo-bootstrap: added a package with option for bootstrapping clingo

package builds in Release mode
uses GCC options to link libstdc++ and libgcc statically

* clingo-bootstrap: apple-clang options to bootstrap statically on darwin

* clingo: fix the path of the Python interpreter

In case multiple Python versions are in the same prefix
(e.g. when clingo is built against an external Python),
it may happen that the Python used by CMake does not
match the corresponding node in the current spec.

This is fixed here by defining "Python_EXECUTABLE"
properly as a hint to CMake.

* clingo: the commit for "spack" version has been updated.
2021-01-29 12:22:57 -08:00
Robert Underwood
0611036abd
doxygen: add support for external detection (#20642) 2021-01-29 21:05:48 +01:00
Yang Zongze
f8124369f9
Print groups properly for spack find -d (#20028) 2021-01-29 11:05:36 -08:00
Peter Lindstrom
0f82fa5151
zfp: several package improvements (#21244)
- add variants for build targets, language bindings, backends
- ensure selected variants are compatible with zfp version
- point to GitHub (not LLNL) tar balls
- add dependencies
- update link to homepage
- add maintainers

Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-01-29 17:51:30 +01:00
albestro
47c85059fb
it seems like there was a bug in the version of APEX that we set by default in 1.5.x (#21391) 2021-01-29 16:51:28 +01:00
a-saitoh-fj
9761c13878
dssp: added smoke tests (#21366) 2021-01-29 10:29:42 +01:00
Tomoyasu Nojiri
e3a0c48599
py-cheetah: restrict valid python interpreter to 2.7.X, add v2.4.4 (#21363) 2021-01-29 09:43:43 +01:00
Tomoyasu Nojiri
7b6c99655c
py-cheetah3: add new package at v3.2.6 (#21387) 2021-01-29 09:41:32 +01:00
Tomoyasu Nojiri
bc639fe60b
wtdbg2: enable build for aarch64 (#21390)
Use sse2neon to maintain the same API calls for aarch64
2021-01-29 09:37:00 +01:00
Tomoyasu Nojiri
b18479a2bd
swarm: add v3.0.0 (#21389) 2021-01-29 09:18:41 +01:00
Adam J. Stewart
519ba5590c
py-graphviz: add v0.8.4 (#21383) 2021-01-28 18:25:07 -08:00
Cyrus Harrison
57c23b964a
add new package: bloaty (#21355) 2021-01-28 16:44:07 -08:00
Dan Lipsa
5a9da90d07
Use utf8 for latex build. (#21360)
Patch provided by @Billae

Avoid the following error:
  File "/home/danlipsa/projects/spack/lib/spack/llnl/util/tty/log.py", line 768, in _writer_daemon
    line = _retry(in_pipe.readline)()
  File "/home/danlipsa/projects/spack/lib/spack/llnl/util/tty/log.py", line 830, in wrapped
    return function(*args, **kwargs)
  File "/usr/lib/python3.8/codecs.py", line 322, in decode
    (result, consumed) = self._buffer_decode(data, self.errors, final)
UnicodeDecodeError: 'utf-8' codec can't decode byte 0x97 in position 220: invalid start byte
2021-01-28 15:58:55 -05:00
Massimiliano Culpo
f523ea8c4e
perl: add v5.32.1 (#21375)
Make it such that BigSur is seen as 10.16 rather than 11.1, since the latter causes troubles with Perl configuration
2021-01-28 21:54:28 +01:00
Desmond Orton
b095dfb44b
New Package r-fpCompare@0.2.3 (#21380) 2021-01-28 14:29:57 -06:00
iarspider
f28026c040
pacparser: new package at v1.3.7 (#21372)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2021-01-28 20:42:53 +01:00
Adam J. Stewart
eeddaaea52
Make git fetching even quieter (for git v1.7.2+)(#21013) 2021-01-28 20:41:05 +01:00
Tomoyasu Nojiri
6ae8d5c380
openmx: Fix for aarch64 (#21367) 2021-01-28 10:20:18 -08:00
Ali Ahmed
b6d52fa466
New package: libpulsar (#21369) 2021-01-28 10:12:12 -08:00
Adam J. Stewart
aa15246280
py-matplotlib: add v3.3.4 (#21378) 2021-01-28 10:09:17 -08:00
bryanherman
ff8ef48806
New package: py-pytest-doctestplus (#21335)
* added package py-pytest-doctestplus

* setuptools required for run
2021-01-28 11:00:03 -06:00
bryanherman
ff0a92e6a8
New package: py-pytest-openfiles (#21339)
* added package py-pytest-openfiles

* remove wheel dep
2021-01-28 10:59:35 -06:00
bryanherman
bf33fe4805
openmc: add v0.11.0, v0.12.0 (#21349)
Also added new variants to fine tune the build
2021-01-28 17:04:34 +01:00
iarspider
9baecd0d78
umesimd: add new package (#21370) 2021-01-28 16:22:21 +01:00
Sergey Kosukhin
d577b6fcdf
autoconf: fix v2.70 and patching procedure of bin/autom4te.in (#21255)
This PR adds:

1.  A patch that fixes a bug in version 2.70 
    (will be fixed upstream in the next release: https://savannah.gnu.org/support/?110396).
2. A fix for the way we patch shebang in bin/autom4te.in. 

For 2, we need to keep the original modification timestamp of the file. 
Otherwise, we either get an empty man page for autom4te (versions 2.69 and before)
or a failure at the build time (versions 2.70 and after). 

The difference has to do with the update of the missing script: https://git.savannah.gnu.org/cgit/automake.git/commit/lib/missing?id=a22717dffe37f30ef2ad2c355b68c9b3b5e4b8c7

It will take time until developers of Autotools-based packages adjust their scripts 
to the new version, therefore, 2.69 is marked as preferred.
2021-01-28 11:21:04 +01:00
Adam J. Stewart
5b4d636d73
Clingo: fix missing import (#21364) 2021-01-28 00:38:01 -08:00
Tomoyasu Nojiri
181f921c1a
libpeas: restrict python version range, use pkgconfig virtual dependency (#21313) 2021-01-28 09:31:54 +01:00
Tomoyasu Nojiri
bcb0e80548
fox: add dependency to glu virtual package (#21280) 2021-01-28 09:29:36 +01:00
Jen Herting
0ebefcc92b
New package: py-proglog (#20750)
* [py-proglog] created template

* [py-proglog] added dependencies

* [py-proglog] fixed pypi url

* [py-proglog] removed fixmes, added homepage and description

* [py-proglog] url -> pypi

* [py-proglog] added dependency on setuptools
2021-01-27 20:59:19 -06:00
Rao Garimella
3dc5ffaf65
Update MSTK version (#21356)
* New interface reconstruction package

* forgot to put in CMake option for Jali

* cleanup whitespace

* fix lines with more than 79 chars

* more long line cleanup

* fix typo WONTON_ENABLE_Kokkos ---> TANGRAM_ENABLE_Kokkos

* New interface reconstruction package

* forgot to put in CMake option for Jali

* cleanup whitespace

* fix lines with more than 79 chars

* more long line cleanup

* fix typo WONTON_ENABLE_Kokkos ---> TANGRAM_ENABLE_Kokkos

* fix bugs in CMake section

* more compact cmake block

* update hash for 1.2.10 and add 1.2.11

* update recipe for Portage 3.0.0

* removing old versions - they won't build with the new recipe and the url specification doesn't work for them

* update version to 3.3.6

Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2021-01-27 20:58:02 -06:00
bryanherman
fe05b16922
New package: py-pytest-benchmark (#21324)
* added pytest-benchmark recipe

* Update var/spack/repos/builtin/packages/py-pytest-benchmark/package.py

Added Python2 dependence.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27 20:57:24 -06:00
bryanherman
d1ce461a81
New package: py-pytest-cpp (#21328)
* added package py-pytest-cpp

* Update var/spack/repos/builtin/packages/py-pytest-cpp/package.py

package is !=5.4.0 use @:5.3.999

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27 20:57:09 -06:00
bryanherman
4efeb39e95
New package: py-pytest-timeout (#21340)
* added package py-pytest-timeout

* Update var/spack/repos/builtin/packages/py-pytest-timeout/package.py

Added Python2.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27 20:56:52 -06:00
bryanherman
f7a47e4048
New package: py-openmc (#21351)
* added package py-openmc

* Update var/spack/repos/builtin/packages/py-openmc/package.py

specify branch when using branch names for versions

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

use run after fixture to install openmc lib

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

Simplify copying openmc library to py-openmc prefix using install

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

NumPy should be 1.9+

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fix paren missing

* Update var/spack/repos/builtin/packages/py-openmc/package.py

fixed parens

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/py-openmc/package.py

use v0.11.0 in URL

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-27 20:56:35 -06:00
eugeneswalker
74fbad4742
autoconf: add version 2.70 (#21362) 2021-01-27 17:59:03 -08:00
Stephen Herbein
71375b3446
flux: update to latest releases (#21306) 2021-01-27 17:56:45 -08:00
bryanherman
cc28bcddd1
fix cpio for intel@18 (#21322) 2021-01-27 17:48:26 -08:00
Harmen Stoppels
3172fc3681
Add conflict for mpich 3.4.x for clang <= 7" (#21326) 2021-01-27 17:45:38 -08:00
Michael Kuhn
f9fef22ce8
rdma-core: add 33.1 (#21361) 2021-01-27 17:31:01 -08:00
Greg Becker
0d521d56ec
openmpi find external fixup (#21354) 2021-01-27 15:27:17 -08:00
Desmond Orton
18b3688cd1
Package/spades (#21227)
Co-authored-by: codeandkey <jtst@iastate.edu>
2021-01-27 23:28:37 +01:00
bryanherman
71bac42357
added gawk version 5.1.0 (#21342) 2021-01-27 13:48:53 -08:00
Christoph Junghans
6b63441281
libecpint: initial add (#21353)
* libecpint: initial add

* flake8
2021-01-27 14:19:48 -07:00
Rémi Lacroix
5ef2daaa4a
ELPA: Switch to HTTPS links. (#21352) 2021-01-27 22:06:44 +01:00
Andrew-Dunning-NNL
895c8b33d9
py-dpath: new recipe (#21331) 2021-01-27 14:46:40 -06:00
bryanherman
68a144eaa3
added package py-pytest-flakes (#21337) 2021-01-27 14:38:30 -06:00
Andrew-Dunning-NNL
52c32047ad
py-mailchecker: new recipe (#21346) 2021-01-27 14:33:23 -06:00