Evan Bollig
d429265d8b
Bugfix for x86_64 skylake and other archs where SIMD features are disabled by Fall back option. ( #21727 )
2021-02-17 08:09:34 -08:00
Tomoki, Karatsu
3e72a12bfd
py-llvmlite: Specified llvm version for aarch64. ( #21695 )
...
* py-llvmlite: Specified llvm version for aarch64.
* Add ~flang variant to llvm dependencies.
2021-02-17 10:07:05 -05:00
ketsubouchi
1fe51ffe18
povray: add smoke test ( #21667 )
2021-02-16 22:54:20 +00:00
Andrew W Elble
aed52d7e79
py-typing: new version, avoid issues with newer versions of python ( #21684 )
...
* py-typing: new version, avoid issues with newer versions of python
https://pypi.org/project/typing/
"For package maintainers, it is preferred to use
typing;python_version<"3.5" if your package requires it to support
earlier Python versions."
* update conflict version / more message detail
* change the depends_on, leave a comment suggesting correct usage
2021-02-16 20:17:22 +00:00
Ryan S. Elliott
67874420c7
bump openkim-models to 2021.01.28 ( #21637 )
2021-02-16 11:01:06 -08:00
Michael Kuhn
c8406bd303
enzo: new package ( #21634 )
2021-02-16 10:42:01 -08:00
Andrew W Elble
0107d71b93
py-horovod: new versions ( #21681 )
...
* py-horovod: new versions
* 0.21.3
* dep changes
* fixes
2021-02-16 18:40:53 +00:00
Martin Pokorny
95ea54103f
Remove minimum version for cfitsio dependency ( #21630 )
...
The actual, documented minimum version of the cfitsio dependency,
v3.181, is now neither available for (easy) download from NASA, nor as
a Spack package. No upper bound on version number exists (at this time).
2021-02-16 10:17:16 -08:00
Harmen Stoppels
145a435100
Add hfp as a maintainer ( #21671 )
2021-02-16 11:23:01 -06:00
Glenn Johnson
60ee4199f5
Add manual_download attribute to packages ( #21687 )
...
Add `manual_download = True` to packages that need to do manual
downloads but do not have the `manual_download attribute set. This
provides a message when installing these packages rather than a generic
fetch error.
2021-02-16 17:10:19 +01:00
Glenn Johnson
8456a73a87
Add manual_download = True to genemark-et package ( #21686 )
2021-02-16 17:09:22 +01:00
ketsubouchi
04cff1136b
cqrlib: new package ( #21532 )
2021-02-16 17:03:48 +01:00
iarspider
cec1f9bd47
rsync: add support for external detection ( #21669 )
2021-02-16 16:57:55 +01:00
iarspider
d2a0235d4b
gruff: add support for external detection ( #21646 )
2021-02-16 16:57:02 +01:00
vvolkl
c0490ab30f
add hep tags to some newly added hep packages ( #21653 )
2021-02-16 16:34:14 +01:00
Mark W. Krentel
bd9289f99d
hpcviewer: add versions 2020.12 and 2021.01 ( #21659 )
...
Add versions 2020.12 and 2021.01. The viewer and trace viewer are now
integrated into a single program and one tar ball. Now available on
arm/aarch64 and now uses Java 11.
2021-02-16 16:33:54 +01:00
Andrew W Elble
6b521a3a5b
qcachegrind/valgrind: new versions ( #21673 )
2021-02-16 16:32:45 +01:00
Michael Kuhn
7f8b62620d
meson: add 0.57.0 ( #21690 )
2021-02-16 16:27:31 +01:00
Sergey Kosukhin
3cc2d91638
cdo: update PROJ dependency constraints ( #21700 )
2021-02-16 16:25:17 +01:00
Olivier Cessenat
e63b34ff77
New Package: hevea ( #21616 )
2021-02-16 11:49:23 +00:00
Sebastian Schmitt
bc9baac720
Update package for Arbor 0.5 ( #21565 )
2021-02-16 09:30:20 +00:00
Mark W. Krentel
f9831b5f65
hpctoolkit: pre-release update ( #21613 )
...
Update some things in hpctoolkit to prepare for a 2021.02.x release:
1. allow binutils to be built with +nls.
2. require libmonitor to be built with +dlopen.
3. allow rocm in more than just develop branch.
4. remove some conflicting setenv's in hpctoolkit module.
2021-02-16 08:47:37 +01:00
Desmond Orton
c1cc4ab1b8
New R Package: Chipseq@1.40.0 ( #21689 )
2021-02-15 16:36:44 -08:00
Michael Kuhn
c805b168d3
glib: add 2.66.7 ( #21691 )
2021-02-15 16:29:39 -08:00
a-saitoh-fj
e3bf23e292
py-dask: add v2020.12.0 ( #20541 )
2021-02-15 17:32:17 +00:00
Phil Carns
c55406abdf
deprecate margo package (all versions) ( #21680 )
...
- this is maintained in the "mochi-margo" package now instead
2021-02-15 11:16:12 -06:00
eugeneswalker
e2c16bfe22
llvm-doe: add +flang variant ( #21610 )
2021-02-15 11:13:32 -06:00
Tomoyasu Nojiri
6e18188d43
fujitsu-fftw: Add version 1.0.0 ( #21664 )
2021-02-15 10:26:21 +01:00
Tomoki, Karatsu
b6e2e731bc
py-numpy: check if execute commands are feasible. ( #21507 )
...
* py-numpy: check if execute commands are feasible.
* Apply patch to all versions.
2021-02-14 12:22:48 -06:00
Michael Kuhn
155bbab44b
py-questionary: new package ( #21658 )
2021-02-14 11:46:52 -06:00
Michael Kuhn
b111ef48da
py-prompt-toolkit: add 3.0.16 ( #21657 )
2021-02-14 08:36:18 -06:00
Jen Herting
871fdc12b6
New package: py-hyperopt ( #21603 )
...
* py-hyperopt for ...
* updates to hyperopt
* updates for mypy
* removed versions
* removed url
* fixed checksum
* fixed version of pyspark
* added 3:
* removed pyspark constraints and untested versions
* [py-hyperopt] removed version 0.2.4
* [py-hyperopt] added vairants spark, mongo, and atpe
* [py-hyperopt] added dependency on py-lightgbm
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-02-12 20:13:19 +00:00
Jen Herting
4649a251e6
New package: py-lightgbm ( #21649 )
...
* [py-lightgbm] created template
* [py-lightgbm] added homepage and description
* [py-lightgbm] added dependencies
* [py-lightgbm] build requires cmake
* [py-lightgbm] added mpi variant
* [py-lightgbm] removed fixmes
* [py-lightgbm] removed more fixmes
2021-02-12 13:34:08 -06:00
ketsubouchi
7add9de2e5
neartree: new package at v3.1 ( #21534 )
2021-02-12 19:00:54 +01:00
ketsubouchi
1e7fe89e1d
cvector: new package at v1.0.3 ( #21533 )
2021-02-12 17:07:25 +01:00
shanedsnyder
ad0ba8ce68
darshan-util" add "shared" variant ( #21640 )
2021-02-12 17:06:26 +01:00
Olivier Cessenat
ca7d1c29bc
ocamlbuild: new package ( #21559 )
2021-02-12 07:42:43 -06:00
iarspider
5d9c17d2bf
popt: depend on virtual iconv package ( #21645 )
2021-02-12 10:58:20 +00:00
AMD Toolchain Support
b53bf7cefd
xpmem: Added RHEL 8.3 support ( #21563 )
2021-02-12 11:01:55 +01:00
Cyrus Harrison
13852986a4
conduit: add v0.7.1 ( #21639 )
2021-02-12 10:35:14 +01:00
Ryan S. Elliott
f92580240e
Add support for KIM package in LAMMPS ( #21638 )
2021-02-11 19:10:45 -07:00
Tom Epperly
58b9c6dadd
Fix mumps compilation with gcc@10 (i.e., gfortran) ( #21631 )
...
* add new flag when compiling mumps with %gcc@10.
* Fix style
* Try to fix formatting
* Use flag_handler approach suggested by @michaelkuhn
in the PR review.
* Delete former approach
* Another style issue
* Add another space
* More fixes
2021-02-12 01:14:09 +00:00
Daryl W. Grunau
0724467ad2
caliper: version upgrade to 2.5.0 ( #21606 )
...
Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2021-02-11 20:34:22 +01:00
Dr. Christian Tacke
437d92155d
mesa18: Do not deprecate for now ( #21627 )
...
We still need mesa18 for some of our builds.
Those builds require python@2, normal mesa only works with
python@3.
* Remove the deprecation tag
* Add myself as a maintainer: I volunteer to help with this
package for the time being.
* There is only one version, no need to prefer it.
2021-02-11 19:12:38 +00:00
Jen Herting
0dcb0d885f
[py-py4j] added version 0.10.9 ( #21625 )
2021-02-11 18:16:38 +00:00
Jen Herting
f7a05e0c61
[py-pyspark] new version and limited python for old versions ( #21602 )
...
* fixed install with ver 3 and python 3.0
* replaced @3 with @2.999
* [py-pyspark] added version requirements for py-py4j
* [py-pyspark] all versions require at least version 2.7 of python
* [py-pyspark] fixed comma syntax
Co-authored-by: Sid Pendelberry <sid@rit.edu>
2021-02-11 11:16:29 -06:00
vvolkl
3d6e9e172d
genfit: set the ROOT prefix when building genfit ( #21589 )
...
Co-authored-by: lintao <lintao51@gmail.com>
2021-02-11 17:03:20 +01:00
Harmen Stoppels
f255c3eb76
libxc: add v5.1.0 ( #21593 )
2021-02-11 17:01:21 +01:00
Harmen Stoppels
882b8f9d42
spglib: add versions up to v1.16.1 ( #21624 )
2021-02-11 15:58:15 +00:00
Michael Kuhn
91d2c4f7db
meson: add 0.56.2 ( #21608 )
2021-02-11 16:46:01 +01:00
Erik Schnetter
7f003a77dd
nsimd: add v2.1 ( #21623 )
...
Updated variants and conflicts accordingly
2021-02-11 15:41:46 +00:00
Michael Kuhn
3268cf4b96
libfyaml: new package ( #21604 )
2021-02-11 16:41:16 +01:00
Michael Kuhn
ef5b15be40
libcyaml: new package ( #21598 )
2021-02-11 16:40:28 +01:00
Michael Kuhn
da46da1c2a
libyaml: add 0.2.5 ( #21597 )
2021-02-11 16:40:06 +01:00
Chuck Atkins
a57598defe
doxygen: fix gcc getting stuck in an infinite loop ( #21614 )
2021-02-11 16:35:51 +01:00
Michael Kuhn
e2084ea6fd
glib: add 2.66.6 ( #21605 )
2021-02-11 16:27:57 +01:00
M. Eric Irrgang
dea9334189
Apply compiler filters to GROMACS installation. ( #21621 )
...
The GROMACS package embeds references to its build tool chain.
Use the Spack utilities to make sure these references are correct
outside of the isolated Spack build environment.
2021-02-11 14:52:32 +00:00
victorusu
fd8eac7052
Add sanity checks to reframe recipe ( #21622 )
2021-02-11 15:35:57 +01:00
victorusu
2fbc8caf86
pygelf: add v0.4.0 ( #21620 )
2021-02-11 15:23:55 +01:00
M. Eric Irrgang
944cb5dec6
Update GROMACS package ( #21617 )
...
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-02-11 15:16:27 +01:00
Michael Kuhn
fc00944900
meson: remove cmake dependency ( #21607 )
...
cmake was added as a runtime dependency to meson in #20449 . This
introduces an unnecessary implicit cmake dependency, which increases
build time for meson considerably. cmake is only one of many methods for
finding dependencies (pkg-config, qmake etc.), which are also not
runtime dependencies of meson. Add cmake as a build dependency to mesa
instead.
2021-02-10 23:46:52 -05:00
Axel Huebl
48af2ac8f9
adios2: Add 2.7.1 release ( #21584 )
...
Add the latest release of ADIOS2.
2021-02-10 23:44:42 -05:00
Jen Herting
5828a2cd31
[py-chalice] py-typing causes issues with python >= 3.5 ( #21202 )
...
* [py-chalice] py-typing causes issues with python >= 3.5
* [py-chalice] changed upperbound on typing
2021-02-10 21:31:02 +00:00
eugeneswalker
e15a3438a8
ascent: add version v0.6.0 ( #21573 )
2021-02-10 10:14:16 -08:00
a-saitoh-fj
24dd5d12a5
py-llvmlite: Changing build options when using the FUJITSU compiler ( #21585 )
2021-02-10 09:58:10 -06:00
vvolkl
08972014f8
[py-uproot4] add new versions ( #21588 )
2021-02-10 09:57:10 -06:00
a-saitoh-fj
bd836540f2
New package: py-dask-sphinx-theme ( #21582 )
2021-02-10 10:22:03 +01:00
a-saitoh-fj
cf9a7bc7f6
pandoc modified:package.py ( #21581 )
2021-02-10 10:20:47 +01:00
h-denpo
7d48bbfd3a
raxml-ng: Fixed typo: ( #21580 )
2021-02-10 10:17:28 +01:00
Matt Schramm
175d614bc6
Update package.py ( #21577 )
2021-02-10 10:16:22 +01:00
Shintaro Iwasaki
ca6ec59a86
sollve: deprecate the sollve package ( #21578 )
2021-02-10 01:49:20 +00:00
Jen Herting
a938cc512b
New package: py-moviepy ( #20751 )
...
* [py-moviepy] created template
* [py-moviepy] added dependencies
* [py-moviepy] removed fixmes, added homepage and description
* [py-moviepy] updated to pypi and updated checksum
* [py-moviepy] added setuptools dependency
* [py-moviepy] more specific version limit
* [py-moviepy] added checksum for version 1.0.1
* [py-moviepy] numpy restriction not nesessary here
2021-02-09 23:18:51 +00:00
kean-smullen-nnl
32056da93b
New Package: py-xgboost ( #21470 )
...
* new python package py-xgboost added
* py-xgboost spack style applied
* py-xgboost: Addressing PR #21470 comments. Added variant descriptions and fixed scikit-learn when clause
2021-02-09 23:12:20 +00:00
Satish Balay
42e8a64660
xsdk: update petsc4py, strumpack dependencies ( #21569 )
2021-02-10 00:10:09 +01:00
Adam J. Stewart
d580ac302d
3DTK: add new package ( #20931 )
...
* 3DTK: add new package
* Add missing opencv variants
Co-authored-by: Michael Kuhn <michael@ikkoku.de>
* Fix cmake version req, add eigen dep
* Prefer trunk version
* Tell 3dtk where to find eigen
* Fix installation
* Fix installation
Co-authored-by: Michael Kuhn <michael@ikkoku.de>
2021-02-09 16:45:41 -06:00
Ethan Stam
865d38afa7
ParaView, LLVM: add -shared-intel to solve intel linking failures ( #18195 )
2021-02-09 23:26:49 +01:00
Desmond Orton
2697c73097
New Package r-reproducible ( #21434 )
2021-02-09 14:11:14 -08:00
Glenn Johnson
d01edbb48e
Fix groff build with long interpeter line ( #21549 )
...
This PR fixes the case where groff fails to build if the spack install
path is really long. There are a couple of perl scripts that get built,
and used, during the build phase that will fail when the perl
interpreter line is too long. Filtering the lines will not work because
the files don not exist after the configure phase and patching after the
build phase is too late. This PR runs the scripts explicitly with the
spack perl via the $(PERL) variable in the call to the script.
2021-02-09 13:54:51 -08:00
Glenn Johnson
f7a9fbc688
Update the Spack R BioConductor packages to Bioconductor-3.12 ( #21575 )
2021-02-09 15:35:30 -06:00
takanori-ihara
fe863b68b2
biobambam2: Add test method and test scripts. ( #21504 )
...
Co-Authored-By: Tamara Dahlgren <dahlgren1@llnl.gov>
2021-02-09 12:33:55 -08:00
Jordan Ogas
02a4abadfa
add charliecloud 0.22 ( #21574 )
2021-02-09 12:15:03 -08:00
Dr. Christian Tacke
11711fcbe5
root: 6.22.04 works with xrootd 5 ( #21572 )
...
ROOT version 6.22.04 has been ported to support xrootd 5.
So let's support that.
See: https://github.com/root-project/root/commit/a33b156e3bf809343eda08150666154a
2021-02-09 11:33:14 -08:00
Evan Bollig
cc6d055786
Relion 3.1.1 patch for Ubuntu18.04 ( #21556 )
2021-02-09 11:07:06 -08:00
Cyrus Harrison
533d4bbc3c
add conduit 0.7.0 release ( #21558 )
2021-02-09 11:02:30 -08:00
Adam J. Stewart
7ccb9992a6
Procedure to deprecate old versions of software ( #20767 )
...
* Procedure to deprecate old versions of software
* Add documentation
* Fix bug in logic
* Update tab completion
* Deprecate legacy packages
* Deprecate old mxnet as well
* More explicit docs
2021-02-09 13:51:18 -05:00
Toyohisa Kameyama
b802e75274
penblas: fix link error in dependent packages. ( #21561 )
2021-02-09 09:53:09 -08:00
Harmen Stoppels
0760c7c704
Add more cmake patch releases ( #21562 )
2021-02-09 09:48:34 -08:00
Adam J. Stewart
341eec8dfb
py-pandas: add v1.2.2 ( #21568 )
2021-02-09 09:32:58 -08:00
Shintaro Iwasaki
3c874e22b5
bolt: add new versions ( #21550 )
2021-02-09 09:43:12 +01:00
Sreenivasa Murthy Kolam
bff4469d8f
replace libelf with elfutils in hip-rocclr ( #21421 )
2021-02-09 08:21:05 +01:00
Jen Herting
58f3d0986d
New package: py-msgpack-numpy ( #21548 )
...
* [py-msgpack-numpy] created template
* [py-msgpack-numpy] added dependencies
* [py-msgpack-numpy] added homepage and description. removed fixmes. fixed copyright date
* [py-msgpack-numpy] url -> pypi
2021-02-08 21:20:07 +00:00
Andrew W Elble
dc1a05d273
py-tensorflow-estimator: update for 2.4.0 ( #21546 )
...
* py-tensorflow-estimator: update for 2.4.0
* build/run deptypes, switch to common tmpfile logic
2021-02-08 21:14:20 +00:00
Andrew W Elble
7fd8b775ad
py-tensorboard: add new versions ( #21545 )
2021-02-08 14:38:09 -06:00
ketsubouchi
0e3b12776c
xforms: new package ( #21535 )
2021-02-08 12:27:36 -08:00
Jen Herting
843e1993ae
New package: py-imageio-ffmpeg ( #20749 )
...
* [py-imageio-ffmpeg] created template
* [py-imageio-ffmpeg] added dependencies
* [py-imageio-ffmpeg] added runtime dependency
* [py-imageio-ffmpeg] removed fixmes, added homepage and description
* [py-imageio-ffmpeg] url -> pypi and updated checksum
2021-02-08 13:30:45 -06:00
AMD Toolchain Support
fc374febf2
amdtoolchain support for openfoam ( #21536 )
2021-02-08 13:22:59 -06:00
Sergei Shudler
6447ec6ff5
Smoke test for parallel-netcdf package ( #21400 )
2021-02-08 11:21:52 -08:00
Satish Balay
c01065ee73
petsc: update to version 3.14.4, and petsc4py to 3.14.1 ( #21544 )
2021-02-08 13:05:52 -06:00
Pieter Ghysels
b37c601a01
Strumpack slate variant ( #21542 )
...
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-02-08 18:27:41 +00:00
Toyohisa Kameyama
512c8a1f1a
ldak: build only x86_64 linux. ( #21414 )
2021-02-08 10:22:47 -08:00
