Commit graph

26746 commits

Author SHA1 Message Date
Erik Schnetter
a5e1367882
meson: add version 0.62.2 (#31005) 2022-06-07 15:13:40 -06:00
Peter Scheibel
c724e26ba9
Staging: determine extensions from nonstandard URLs (#31027)
Fixes #31021

With #25185, we no longer default to using tar when we can't
determine the extension type, opting to fail instead.

This broke fetching for the pcre package, where we couldn't determine
the extension. To determine the extension, we were attempting to
extract it from the destination filename; however, this file name
may omit details of the origin URL that are required to determine the
extension, so instead we examine the URL directly.

This also updates the decompressor_for method not to set ext=None
by default: it must now always be set by the caller.
2022-06-07 14:12:08 -07:00
Glenn Johnson
1b9a1992fb
Update Spack Bioconductor packages to Bioconductor 3.15 (#30984) 2022-06-07 20:10:01 +02:00
Graeme A Stewart
815764bdef
Update prmon recipe, v3.0.2 (#30979)
* Update prmon recipe, v3.0.2

Update recipe to v3.0.2, using external dependency
option for the build (as these are satisfied so easily with Spack)

* Remove "broken" 3.0.1 version

This one could not build properly with Spack, due to
missing submodule sources
2022-06-07 17:17:25 +00:00
Bitllion
adf073b53c
Add New Package:PSCMC (#30944)
* add some new version of abacus and fix bug on mkl

* Add Package:PSCMC

* update maintainer

* rebase

* update maintainers

* Update var/spack/repos/builtin/packages/pscmc/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-06-07 10:11:14 -07:00
Axel Huebl
449e885d4c
WarpX: 22.06 (#31012)
* WarpX: 22.06

Update `warpx` & `py-warpx` to the latest release, `22.06`.

* Patch: Fix 1D CUDA Builds
2022-06-07 09:49:35 -06:00
Brice Videau
560472ce3a
Fix py-deap py-setuptools dependency (#31014) 2022-06-07 08:57:44 -06:00
Brice Videau
0c66446437
Add py-ytopt-autotune version v1.0.0 (#31015) 2022-06-07 08:49:44 -06:00
Massimiliano Culpo
6b4b1dacd9
docs: update the list of Docker images with Spack preinstalled (#31003)
Also, update the image in the docs and use ghcr.io
2022-06-07 16:43:04 +02:00
Gregory Lee
3e90134e14
json-glib depends on gobject-introspection (#30963) 2022-06-07 08:29:38 -06:00
Asher Mancinelli
4ad0594c7b
fd: add new package (#31010) 2022-06-07 08:21:59 -06:00
kwryankrattiger
f13b760f10
Visit: Allow building without rendering (#31006)
This is important for HPC systems.
2022-06-07 08:21:36 -06:00
Carlos Bederián
0f6fb1a706
gmsh: +petsc requires ~int64 variant (#30969) 2022-06-07 16:21:07 +02:00
Jordan Galby
e74d85a524
Fix empty install prefix post-install sanity check (#30983) 2022-06-07 16:17:33 +02:00
Glenn Johnson
ffd63c5de1
R ecosystem: cran updates (#31004) 2022-06-07 16:12:51 +02:00
Axel Huebl
ed263615d7
AMReX: update the CMake requirements for v22.06+ (#31018) 2022-06-07 16:01:13 +02:00
Morten Kristensen
b4e775a11a
py-vermin: add latest version 1.4.0 (#31009) 2022-06-07 06:09:39 -06:00
Mosè Giordano
6a2844fdee
libint: add Python as build dependency (#30870)
Installation process of libint runs a Python script:
<69cc7b9bc6/export/cmake/CMakeLists.txt.export (L410)>.
If Python isn't explicitly listed as build dependency, system Python will be
picked up, which can cause troubles.
2022-06-07 06:01:53 -06:00
Manuela Kuhn
44d670a8ce
git-annex: fix source urls (#30789) 2022-06-07 05:45:40 -06:00
Massimiliano Culpo
4a0ac87d07
archspec: bump to v0.1.4 (#30856)
Fixes compiler flags for oneapi and dpcpp
2022-06-07 08:51:34 +00:00
Michael Kuhn
2c6898c717
glib: add v2.72.2 (#31001) 2022-06-07 02:45:51 -06:00
Brice Videau
0a8083c604
Fix py-ray dependencies and build system (#31016)
* Fix py-ray dependencies and build system

* Update var/spack/repos/builtin/packages/py-ray/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Added documentation for unusual dependencies.

* Fixed npm preinstall script per @adamjstewart suggestion.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2022-06-07 01:36:24 +00:00
John W. Parent
5b45df5269
Update decompression support on Windows (#25185)
Most package installations include compressed source files. This
adds support for common archive types on Windows:

* Add support for using system 7zip functionality to decompress .Z
  files when available (and on Windows, use 7zip for .xz archives)
* Default to using built-in Python support for tar/bz2 decompression
  (note that Python tar documentation mentions preservation of file
  permissions)
* Add tests for decompression support
* Extract logic for handling exploding archives (i.e. compressed
  archives that expand to more than one base file) into an
  exploding_archive_catch context manager in the filesystem module
2022-06-06 18:14:43 -07:00
Chuck Atkins
9d7cc43673
Package: Don't warn for missing source on bundle packages without code (#30913) 2022-06-06 15:33:03 -07:00
miheer vaidya
932065beca
Update package rtags (#30890)
* Update backage bear

Newer versions of rtags aren't available via older url

* Fix sha256 as download link has changed

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2022-06-06 15:30:35 -07:00
Massimiliano Culpo
360192cbfe
atompow: remove again misplaced duplicate package (#30992)
Regression re-introduced in #30404
2022-06-06 14:59:22 -07:00
Jen Herting
7bc349c041
New package: py-numpy-quaternion (#29452)
* first build of numpy-quaternion and spherical-functions

* [py-numpy-quaternion] removed python restriction

* [py-numpy-quaternion] added scipy and numba variants

* [py-numpy-quaternion] fixing unicode

Co-authored-by: Sid Pendelberry <sid@rit.edu>
2022-06-06 14:42:33 -07:00
Jen Herting
603ec40ab1
[py-httpx] added version 0.22.0 (#29806)
* [py-httpx] python dependencies are type=('build', 'run')

* [py-httpx] py-wheel is now implied by PythonPackage

* [py-httpx] fixed older version dependencies

* [py-httpx] added version 0.22.0
2022-06-06 14:34:11 -07:00
renjithravindrankannath
ed6695b9c9
Correcting library path of hsakmt-roct for Centos7 and cleaning up the patch file. (#30885)
* Correcting library path of hsakmt-roct and cleaning up the patch file.

* Delete 007-library-path.patch
2022-06-06 13:50:41 -07:00
Adam J. Stewart
fb173f80b2
py-torchmetrics: add v0.9.0 (#31000) 2022-06-06 16:28:11 +02:00
Ye Luo
15d4262b9b
quantum-espresso: no need of patch and hdf5 is optional for pw2qmcpack (#30884) 2022-06-06 15:47:10 +02:00
Daniel Arndt
7116fb1b70
Kokkos SYCL AOT flags (#30723)
* Kokkos SYCL AOT flags

* Improve selecting the Intel GPU arch
2022-06-06 15:41:13 +02:00
Adam J. Stewart
9b713fa6a6
py-black: new version/variants/maintainer (#30999) 2022-06-06 07:09:39 -06:00
Adam J. Stewart
8d4a5cb247
GCC: add Apple M1 support (#30825)
Co-authored-by: Seth R. Johnson <johnsonsr@ornl.gov>
2022-06-06 14:46:43 +02:00
Filippo Spiga
bf2d44c87e
nvhpc: add v22.5 (#30845) 2022-06-06 14:44:39 +02:00
Brian Van Essen
926e311f3c
dihydrogen: propagate cuda_arch to nvshmem (#30886) 2022-06-06 14:38:58 +02:00
Simon Pintarelli
8ef937032c
quantum-espresso: support libxc also for autotools build (#30895) 2022-06-06 14:26:07 +02:00
Erik
73ce789390
amrvis: add configuration file and default color palette (#30942) 2022-06-06 14:01:57 +02:00
Jianshen Liu
e4f3cfcc3a
cppcheck: add v2.8 (#30993) 2022-06-06 13:42:42 +02:00
Erik Schnetter
7ac05485c6
cmake: New version 3.23.2 (#30994) 2022-06-05 14:01:18 +02:00
John W. Parent
13b0e73a4e
Sanitize filepath from URL (#30625)
Spack's staging logic constructs a file path based on a URL. The URL
may contain characters which are not allowed in valid file paths on
the system (e.g. Windows prohibits ':' and '?' among others). This
commit adds a function to remove such offending characters (but
otherwise preserves the URL string when constructing a file path).
2022-06-04 15:06:43 -07:00
Tom Scogland
03c54aebdd
luajit: use GC64 on darwin (#30971) 2022-06-04 14:44:45 +02:00
G-Ragghianti
f4a4b3fa87
Intel oneAPI DPCPP compatibility toolkit: add new package (#30986) 2022-06-04 14:31:41 +02:00
Adam J. Stewart
6b3607287a
py-botorch: add new package (#30989) 2022-06-04 14:29:33 +02:00
Carlos Bederián
b4b2585d67
protobuf: patch build error when @3.20 %gcc@12.1.0 (#30973) 2022-06-03 21:32:13 +02:00
Satish Balay
29855ae31e
petsc, py-petsc4py: add 3.17.2 (#30982) 2022-06-03 09:39:52 -07:00
Michael Kuhn
44b9efa132
rocksdb: add 7.2.2 (#30977) 2022-06-03 08:56:28 -07:00
Michael Kuhn
f21e26b904
doxygen: add 1.9.4 (#30975) 2022-06-03 08:54:34 -07:00
Jacob Merson
73865c38f9
Include new versions of model-traits package (#30972) 2022-06-03 08:51:43 -07:00
Martin Diehl
38ccefbe84
mpicxx does not work with icpx (#30098) 2022-06-03 08:40:02 -07:00