Commit graph

14710 commits

Author SHA1 Message Date
h-denpo
e772291df1
blast2go: conflicts for platforms other than x86_64 (#21693) 2021-02-19 08:29:33 +00:00
Tomoyasu Nojiri
310e82c863
hdf-eos5: fix hdf5 dependency (#21789) 2021-02-19 09:16:13 +01:00
darmac
901aefc6a5
librelp: add test dependency on valgrind (#21752) 2021-02-19 07:47:50 +01:00
darmac
43cf529594
py-sip: change url because some old package is missing (#21402) 2021-02-18 19:52:00 -06:00
emai-imcs
70b81dc48d
py-fenics-instant: new package for legacy fenics 2016 and 2017 versions (#21775)
* py-fenics-instant: new package for legacy fenics 2016 and 2017 versions

* Update var/spack/repos/builtin/packages/py-fenics-instant/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-02-18 23:02:39 +00:00
Massimiliano Culpo
f2e3edf6db
Testing: use spack.store.use_store everywhere (#21656)
Keep spack.store.store and spack.store.db consistent in unit tests

* Remove calls to monkeypatch for spack.store.store and spack.store.db:
  tests that used these called one or the other, which lead to
  inconsistencies (the tests passed regardless but were fragile as a
  result)
* Fixtures making use of monkeypatch with mock_store now use the
  updated use_store function, which sets store.store and store.db
  consistently
* subprocess_context.TestState now transfers the serializes and
  restores spack.store.store (without the monkeypatch changes this
  would have created inconsistencies)
2021-02-18 13:22:49 -08:00
Satish Balay
cbcf8d208b
xsdk: fix @develop build (#21749)
- petsc4py: update @develop build from petsc repo
- omega-h: develop branch is now main branch
2021-02-18 14:41:36 -06:00
Seth R. Johnson
2d917e17d9
flibcpp: Activate SWIG rebuild when +swig (#21767)
This option allows downstream packages to build with SWIG and the flibcpp-exported SWIG interfaces.
2021-02-18 19:12:18 +00:00
Gregory Lee
3364e5550f
patches to apply to gdbm and m4 when using oneapi compiler (#21740) 2021-02-18 09:39:20 -08:00
Sebastian Schmitt
8e3ac8577f
Arbor: rely on spack's compiler wrapper to set architecture (#21758) 2021-02-18 15:02:09 +00:00
ketsubouchi
432625ca26
openrasmol: new package (#21530) 2021-02-18 13:09:38 +01:00
Freifrau von Bleifrei
ed1540efa3
sgpp: use spack compiler instead of default gcc (#21756)
Co-authored-by: Theresa Pollinger <pollinta@ipvs.uni-stuttgart.de>
2021-02-18 11:28:42 +00:00
Mikael Simberg
651c6ea350
hpx: add v1.6.0 (#21757) 2021-02-18 10:42:19 +00:00
Sergey Kosukhin
3273529936
eccodes: add v2.20.0 (#21703) 2021-02-18 11:20:53 +01:00
Tomoyasu Nojiri
93d9bed192
enzo: fix for aarch64 (#21715) 2021-02-18 11:14:18 +01:00
Xavier Delaruelle
54ee955b76
tcl: add v8.6.11 (#21678) 2021-02-18 11:04:38 +01:00
h-denpo
20fd4e35de
dlib: fix dependency on opencv (#21718)
Since a variant (imgcodecs,default=False) has been added to opencv,
+imgcodecs is now required in dlib's opencv dependency.
2021-02-18 11:02:24 +01:00
m-shunji
9771903533
quantum-espresso: fix ldflags for scalapack (#21719) 2021-02-18 11:00:19 +01:00
Harmen Stoppels
1e16fcfd91
cmake: add v3.18.6, v3.19.5 (#21725) 2021-02-18 10:53:05 +01:00
Michael Kuhn
fd85f79e18
osu-micro-benchmarks: add v5.7 (#21729) 2021-02-18 10:48:41 +01:00
Erik Schnetter
7fe131e444
nsimd: add v2.2 (#21743) 2021-02-18 10:33:09 +01:00
holrock
5f6d77f4c4
ruby: add v2.7.2, v3.0.0 (#21745) 2021-02-18 10:17:41 +01:00
Desmond Orton
94e2eee778
sratoolkit: add v2.10.9 (#21746) 2021-02-18 10:17:12 +01:00
darmac
76304595d5
ctpl: add dependency on gettext (#21747) 2021-02-18 10:07:38 +01:00
Adam J. Stewart
7ac156fb12
py-scipy: add v1.6.1 (#21748) 2021-02-18 10:06:44 +01:00
darmac
598f0c89fd
vcsh: add bin as a directory (#21750) 2021-02-18 10:06:03 +01:00
ketsubouchi
b3e5df1049
cbflib: new package (#21531) 2021-02-18 10:05:32 +01:00
darmac
de68646c6e
openfst: fix conflicts version for gcc (#21753) 2021-02-18 10:01:43 +01:00
emai-imcs
acc7169fdc
py-fenics-ufl: inclusion of version 2016.2.0 (#21738)
* fix to pre 2019.1.0 version and support for 2016.1.0 added

* added 2016.2.0 version for retro dolfin support
2021-02-17 21:44:48 -06:00
emai-imcs
0082750f86
fix to compiliation error with fenics in pre 2019 versions and support for 2016.2.0 version of fiat added (#21708) 2021-02-17 21:44:12 -06:00
emai-imcs
827262df89
update to dijisto to support 2019.1.0 version (#21707) 2021-02-17 21:42:44 -06:00
eugeneswalker
1dc161095a
openblas@0.13.3 cannot be built with gcc<10.2 on power (#21711) 2021-02-17 18:34:54 -08:00
Tomoki, Karatsu
1a32aaa10e
py-numpydoc: Add new version, and care for old version. (#21713) 2021-02-18 00:36:26 +00:00
Glenn Johnson
c11c5df738
Update the deps for the r package (#21654)
The dependencies needed a little clean up as several dependencies are
only needed for the +X variant. This PR consolidates all of the
dependencies that actually require +X and explicitly disables them when
~X to prevent accidentally picking up system libraries.

- modified the description of the +X variant
- arranges dependencies to group them
- added missing dependency on xz
- removed unneeded dependencies
	- freetype
	- glib
- set dependencies when +X
	- cairo
	- jpeg
	- libpng
	- libtiff
	- tcl/tk
- R uses tcl/tk together, so only tk needs to be depended on, and only
  when +X
- moved tcl/tk resources to with/without-x test
- added explicit with/without settings for
	- cairo
	- jpeglib
	- libpng
	- libtiff
	- tcltk
2021-02-17 17:39:05 -06:00
Andrew W Elble
151003a469
openssl: 1.1.1j (#21726) 2021-02-17 11:14:53 -06:00
Evan Bollig
d429265d8b
Bugfix for x86_64 skylake and other archs where SIMD features are disabled by Fall back option. (#21727) 2021-02-17 08:09:34 -08:00
Tomoki, Karatsu
3e72a12bfd
py-llvmlite: Specified llvm version for aarch64. (#21695)
* py-llvmlite: Specified llvm version for aarch64.

* Add ~flang variant to llvm dependencies.
2021-02-17 10:07:05 -05:00
ketsubouchi
1fe51ffe18
povray: add smoke test (#21667) 2021-02-16 22:54:20 +00:00
Andrew W Elble
aed52d7e79
py-typing: new version, avoid issues with newer versions of python (#21684)
* py-typing: new version, avoid issues with newer versions of python

https://pypi.org/project/typing/

"For package maintainers, it is preferred to use
typing;python_version<"3.5" if your package requires it to support
earlier Python versions."

* update conflict version / more message detail

* change the depends_on, leave a comment suggesting correct usage
2021-02-16 20:17:22 +00:00
Ryan S. Elliott
67874420c7
bump openkim-models to 2021.01.28 (#21637) 2021-02-16 11:01:06 -08:00
Michael Kuhn
c8406bd303
enzo: new package (#21634) 2021-02-16 10:42:01 -08:00
Andrew W Elble
0107d71b93
py-horovod: new versions (#21681)
* py-horovod: new versions

* 0.21.3

* dep changes

* fixes
2021-02-16 18:40:53 +00:00
Martin Pokorny
95ea54103f
Remove minimum version for cfitsio dependency (#21630)
The actual, documented minimum version of the cfitsio dependency,
v3.181, is now neither available for (easy) download from NASA, nor as
a Spack package. No upper bound on version number exists (at this time).
2021-02-16 10:17:16 -08:00
Harmen Stoppels
145a435100
Add hfp as a maintainer (#21671) 2021-02-16 11:23:01 -06:00
Glenn Johnson
60ee4199f5
Add manual_download attribute to packages (#21687)
Add `manual_download = True` to packages that need to do manual
downloads but do not have the `manual_download attribute set. This
provides a message when installing these packages rather than a generic
fetch error.
2021-02-16 17:10:19 +01:00
Glenn Johnson
8456a73a87
Add manual_download = True to genemark-et package (#21686) 2021-02-16 17:09:22 +01:00
ketsubouchi
04cff1136b
cqrlib: new package (#21532) 2021-02-16 17:03:48 +01:00
iarspider
cec1f9bd47
rsync: add support for external detection (#21669) 2021-02-16 16:57:55 +01:00
iarspider
d2a0235d4b
gruff: add support for external detection (#21646) 2021-02-16 16:57:02 +01:00
vvolkl
c0490ab30f
add hep tags to some newly added hep packages (#21653) 2021-02-16 16:34:14 +01:00