Commit graph

2449 commits

Author SHA1 Message Date
Patrick Gartung
e6dc448f18 Compiling python with gnu c++ on macos fails with toolboxglue enabled. 2016-09-20 23:34:15 -07:00
Gregory L. Lee
25ee9456f5 added STAT release 3.0.0 2016-09-20 16:09:31 -07:00
Erik Schnetter
ef1f441424 Julia: Add version 0.5.0 (#1809) 2016-09-20 12:40:58 -07:00
Adam J. Stewart
db483e77e4 Remove url_for_version as it breaks spack info (#1503) 2016-09-20 10:17:51 -07:00
Joseph Ciurej
7f9e89eb53 Update Package: Git-LFS (#1769)
* Fixed a few small bugs in the 'git-lfs' install script.

* Fixed a bug in the '(go|go-bootstrap)@1.4.2+test' install scripts.

* Fixing a minor style issue in the 'git-lfs' install script.
2016-09-20 10:08:25 -07:00
Erik Schnetter
00bac8f294 PETSc: Explicitly point to cpp when configuring (#1807)
I encountered an HPC system where PETSc's configure stage does not find a valid `cpp` (C preprocessor). Explicitly pointing to Spack's `cpp` wrapper resolves the problem.
2016-09-20 10:05:57 -07:00
Adam J. Stewart
f180d748be Remove lingering boilerplate FIXMEs (#1756) 2016-09-20 08:01:55 -07:00
Joseph Ciurej
2cbae1d691 Update Package: Metis (#1783)
* Fixed a bug that was causing post-install METIS tests to fail.

* Improved the patching procedure used in the 'metis' install script.

* Enabled patch skipping for the 'metis' and 'parmetis' packages.

* Fixed some minor style issues in the 'parmetis' package.

* Improved the 'metis' test fix and added 'run_tests' support.
2016-09-20 02:48:31 -07:00
Robert D. French
5c11fe88df Add UberFTP utility (#1780) 2016-09-20 02:47:10 -07:00
Denis Davydov
1565a643bd dealii: add 8.4.2 (#1782) 2016-09-20 02:46:57 -07:00
Bruno Turcksin
20fcd3f1dd Add Python support to gdb. (#1790) 2016-09-20 02:46:30 -07:00
Joseph Ciurej
e73a7c80bf Update Package : Zoltan (#1793)
* Refactored and reorganized the 'zoltan' install script.

* Fixed a few bugs with the '+mpi' and '+fortan' variants of 'zoltan'.

* Reintroduced and improved the '+shared' variant for the 'zoltan' package.

* Improved compatibility with different MPI providers for 'zoltan'.
2016-09-20 02:46:13 -07:00
Tom Merrick
d71f8dcab5 samtools could not find the ncurses library (#1785) 2016-09-20 02:27:19 -07:00
Massimiliano Culpo
ea446c0f0e lmod : added support for the creation of hierarchical lua module files (#1723)
Includes :
- treatment of a generic hierarchy (i.e. lapack + mpi + compiler)
- possibility to specify which compilers are to be considered Core
- correct treatment of the 'family' directive
- unit tests for most new features
2016-09-20 02:26:25 -07:00
Erik Schnetter
bd6aac3102 Update Julia to 0.4.7 (#1805) 2016-09-20 02:16:25 -07:00
Erik Schnetter
bddb15ef4c Make VisIt build again (#1762)
- add new version 2.10.3
- explicitly require hdf5 variant ~mpi, since we don't know how to build with mpicc
- explicitly disable glew since it may not be installed
2016-09-20 02:15:58 -07:00
Erik Schnetter
70424b511e Work around cmake problems in VTK (#1761)
The cmake scripts can't handle the semicolons in gcc's version output. Filter them out before detecting the version.
2016-09-20 02:15:37 -07:00
Erik Schnetter
2a558e9d7a Tighten HDF5 version requirements for Silo (#1760) 2016-09-20 02:14:55 -07:00
Erik Schnetter
8426b65592 Make cmake @2.8 build again (#1759) 2016-09-20 02:14:37 -07:00
Erik Schnetter
140f1773cf Update hwloc to 1.11.4 (#1752) 2016-09-20 02:14:17 -07:00
Erik Schnetter
682ac5194e Declare py-beautifulsoup4's dependency on py-setuptools (#1748) 2016-09-20 02:14:06 -07:00
Erik Schnetter
48c87da07b Update curl to 7.50.3 (#1747)
* Update curl to 7.50.2
* Update curl to 7.50.3
2016-09-20 02:13:54 -07:00
Erik Schnetter
bbdc429db3 Update OpenMPI to 2.0.1 (#1721) 2016-09-20 02:13:40 -07:00
Erik Schnetter
2e490050f6 Update OpenBLAS to 0.2.19 (#1702) 2016-09-20 02:13:25 -07:00
Erik Schnetter
ebde2a101e Reorder versions in openssl (#1601) 2016-09-20 02:13:14 -07:00
Erik Schnetter
ee2ddaa7cc Update mbedtls to 2.3.0 (#1600) 2016-09-20 02:13:03 -07:00
Erik Schnetter
6848752fed Update cereal to 1.2.1 (#1599) 2016-09-20 02:12:52 -07:00
Erik Schnetter
dfad4a0abc Update binutils to 2.27 (#1598) 2016-09-20 02:12:40 -07:00
Michael Kuhn
7fd44a983d Update mvapich2 to 2.2 (#1775) 2016-09-15 10:42:57 +08:00
Elizabeth Fischer
2a823fbdfd [RtM] Added py-proj/package.py (RtM = Ready to Merge) (#717)
* Added py-proj package

* Added bug-fix patched version to the package.

* Removed dependency of py-proj on proj.

* py-proj: Added missing dependency

* py-proj: Removed versions from forked repos, now that necessary bug fixes have been merged into the main repo.

* Update package.py

Added a blank line that Travis wanted.

* 1. Added copyright
2. Used setup_py
3. Added type='build' for dependencies.
2016-09-15 10:35:57 +08:00
Erik Schnetter
1d09d1a4e2 Update netlib-lapack to 3.6.1 (#1597) 2016-09-09 13:50:37 -07:00
Erik Schnetter
567d67fae2 Add libiconv dependency for git (#1468)
Also remove "--without-pcre" flag that git does not understand any more.
2016-09-09 12:57:49 -07:00
Erik Schnetter
8249108cc6 Qthreads: Switch back to using tarball to get released version (#1739)
* Qthreads: Switch back to using tarball for download

* Don't require autotools any more

* Re-enable autotools

* Remove autotools again

* Use .tar.bz tarball; remove outdated code
2016-09-09 06:56:11 -07:00
Erik Schnetter
e06a0271a4 New package h5hut (#1737)
* New package h5hut -- High-Performance I/O Library for Particle-based Simulations

* Set up MPI compilers

* Add version 1.8.12 to HDF5

* Correct Sphinx error
2016-09-08 13:27:47 -07:00
Erik Schnetter
ff7c0335ff Declare fontconfig dependency on pkg-config (#1686) 2016-09-08 12:15:42 -07:00
Todd Gamblin
3d3d65f3f7 Merge pull request #1553 from adamjstewart/fixes/netcdf-hdf5
Fix NetCDF/HDF5 dependency resolution problems
2016-09-08 11:58:46 -07:00
Adam J. Stewart
0586b388df Add latest version of libpng, ncview depends on libpng (#1502)
* Add latest version of libpng

* ncview depends on libpng
2016-09-08 09:02:10 -07:00
Robert D. French
ccfbfcc890 ITS XML Translation Tool (#1728) 2016-09-06 06:56:13 -07:00
Jeffrey Salmond
26d45bc106 fontconfig: add --disable-docs to configure (#1729) 2016-09-06 06:55:58 -07:00
Kelly Thompson
f0192edf0d For OpenMPI v 2+, add a configure option to provide C++ bindings. (#1730)
+ Starting with version 2.0, OpenMPI no longer provides C++ bindings by default
  (libmpi_cxx.so). Add a configure option to instruct the build to also build
  and install libmpi_cxx.so.
+ This MPI feature is needed by at least one spack package (moab).
2016-09-06 06:55:37 -07:00
alalazo
d39b666913 plumed : avoid linking with libgslcblas 2016-09-06 11:21:26 +02:00
Massimiliano Culpo
497bbb3ae3 added package : pexsi (#1550)
* pexsi : added package
* cp2k : added pexsi (works for gcc+openmpi with and without plumed)
2016-09-03 08:13:47 -07:00
becker33
fa310c825d Merge pull request #1704 from eschnett/eschnett/libiconf-gets
Make libiconv work with C11
2016-09-02 16:46:40 -07:00
becker33
6de191a926 Merge pull request #1708 from robertdfrench/globus-toolkit
Globus Toolkit
2016-09-02 15:31:34 -07:00
becker33
ea6143402f Merge pull request #1715 from alfredo-gimenez/bugfix/vim
Fix vim package.
2016-09-02 14:59:14 -07:00
Alfredo Gimenez
19102559f0 Add sbt (scala build tool) package 2016-09-02 14:15:20 -07:00
Alfredo Gimenez
817c120b1c Fix vim package 2016-09-02 14:09:46 -07:00
Erik Schnetter
d78d18c4bd Update OpenMPI description (#1705) 2016-09-02 10:57:35 -07:00
Jeffrey Salmond
5146c64dfc Fixes for the ImageMagick package. (#1709)
* add pango dependency

* add new package ghostscript-fonts & add to ImageMagick as dependency

also tell ImageMagick's configure where the font dir is!

* refactor to fix flake8

* add homepage to ghostscript-fonts

* use install_tree

* remove unneeded import
2016-09-02 10:41:35 -07:00
Erik Schnetter
c7bb523c8f Declare qthreads dependency on automake (#1711) 2016-09-02 10:34:07 -07:00