Commit graph

22416 commits

Author SHA1 Message Date
Robert Mijakovic
a7547d8ee9
Python: add versions 3.8.9, 3.9.4 (#22975) 2021-04-13 13:58:59 -07:00
Tiziano Müller
c6a08981a7
gaussian-view/vmd: add deps on X11/GL libraries (#22322)
Both binary packages would otherwise require X11 and Mesa libraries to
be installed on the host to run. Make sure they use the Spack-provided
libraries by patching the `rpath` via `patchelf`.
2021-04-13 13:42:00 -07:00
Tiziano Müller
dee030618f
Documentation: update intel-parallel-studio instructions (#22248)
* Clarify stub compiler definition in compilers.yaml
* Update explanation of why stub compiler definition is needed
* Add note about required module definition when using Spack-installed
  intel-parallel-studio as intel-compiler
* Add suggestion about updating package config preferences based on
  choice of variants when installing intel-parallel-studio to avoid
  reinstallation
2021-04-13 13:31:14 -07:00
shanedsnyder
c801b0cb40
add darshan 3.3.0-pre1 pre-release (#22942) 2021-04-13 19:44:42 +00:00
G-Ragghianti
f2169e1f17
netlib-lapack: New versions (#22964) 2021-04-13 12:34:09 -07:00
Gregory Lee
6054a97d0a
added dyninst 11.0.0 (#22949) 2021-04-13 12:14:06 -07:00
mic84
cb53259306
amrex: allow builds with clang and apple-clang (#22967) 2021-04-13 11:18:19 -07:00
Vicente Bolea
e020f343de
VTKM: change preferred version (#22950) 2021-04-13 11:14:15 -07:00
Glenn Johnson
7a224c583a
bcftools: add v1.12 (#22883) 2021-04-13 12:04:16 -06:00
Glenn Johnson
43ece950e5
htslib: add version 1.12 (#22882) 2021-04-13 10:56:48 -07:00
Harmen Stoppels
17ea01fbce
bump cmake (#22961) 2021-04-13 09:46:19 -07:00
Adam J. Stewart
af52b8e29e
py-pandas: add v1.2.4 (#22944) 2021-04-13 16:39:47 +00:00
Sreenivasa Murthy Kolam
6c632dad71
changes to enable rocm builds using git repo (#22943) 2021-04-13 15:36:34 +00:00
Harmen Stoppels
e7d392c49a
Fix issue where binutils builds ld with ~ld (#22959)
Let's be very explicit and always add --enable or --disable.
2021-04-13 16:31:44 +02:00
Matthieu Dorier
e320b1d7e4
berkeley-db: making +cxx and +stl default to True (#22960) 2021-04-13 13:18:28 +00:00
Simon Frasch
c11af21da2
spfft: add version 1.0.2 (#22958) 2021-04-13 13:35:37 +02:00
Tiziano Müller
a580788d86
intel-parallel-studio: fix vtune installation for 2020+ (#22255)
vtune_amplifier got renamed to vtune_profiler for the 2020+ suite
2021-04-13 13:01:58 +02:00
Harmen Stoppels
0b9bd92511
SIRIUS and SpFFT versions need ROCm < 4.1 (#22957)
FindHIP.cmake script is not working for both 4.0 and 4.1.

It's fixed in their develop branches
2021-04-13 11:58:19 +02:00
Tiziano Müller
1f1b568e95
spglib: fix libs property for some multilib distros (#22956)
on multilib distros with lib/lib64 (rather than lib32/lib) the library ends up in a dir lib64/ instead of lib/, breaking the libs property (and the cp2k+spglib build)
2021-04-13 11:01:15 +02:00
yellowhat
bff713aeb2
gcc: add v10.3 (#22894) 2021-04-13 08:14:43 +00:00
Jen Herting
85e70600ed
New package: r-tictoc (#22937) 2021-04-12 21:53:36 +00:00
Robert Mijakovic
a7d7f4e98a
vtk: new version, 9.0.1 (#22880)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-04-12 15:52:07 -06:00
Jen Herting
62e256d995
New Package: r-assertive-types (#22933) 2021-04-12 21:48:13 +00:00
Harmen Stoppels
782a7dc690
Add new versions of patchelf (#22939) 2021-04-12 21:42:38 +00:00
Asher Mancinelli
e30aff9b6b
Bump hiop version (#22884) 2021-04-12 14:30:46 -07:00
Glenn Johnson
976cf4496b
samtools: add version 1.12 (#22885) 2021-04-12 14:28:04 -07:00
arjun-raj-kuppala
24f4a39d0e
ROCm relase 4.1.0: Bump up version of rocm-validation-suite (#22946) 2021-04-12 20:46:10 +00:00
Pramod Kumbhar
96c984e0ce
Add conflict for Mac OS for STAT package (#22919)
See https://github.com/LLNL/STAT/issues/19
2021-04-12 12:14:15 -07:00
jthies
087015e1ac
packages/phist: new version 1.9.4 (#22922)
fix version 1.7.4 checksum
re 22758: phist-1.9.4 should resolve this issue, once confirmed I will add a patch for older versions.
2021-04-12 11:18:01 -07:00
Axel Huebl
982d3abcfd
openPMD-api: 0.13.3 (#22910) 2021-04-12 18:10:52 +02:00
Peter Scheibel
51df9b0c9c
Externals with merged prefixes (#22653)
We remove system paths from search variables like PATH and 
from -L options because they may contain many packages and
could interfere with Spack-built packages. External packages 
may be installed to prefixes that are not actually system paths 
but are still "merged" in the sense that many other packages are
installed there. To avoid conflicts, this PR places all external
packages at the end of search paths.
2021-04-12 11:19:29 +02:00
Glenn Johnson
0b472a91d1
maker: add v3.01.03 (#22915) 2021-04-12 11:15:03 +02:00
Chris White
edcd0703df
blt: add v0.4.0 (#22917) 2021-04-12 11:14:05 +02:00
Glenn Johnson
7c06b472f5
bart: update package (#22926)
- add version 0.7.00
- make build work with intel-oneapi-mkl
- Add myself as maintainer
2021-04-12 11:05:53 +02:00
Martin Pokorny
e3b0d7ce0e
casacore: change FFT variants for correct, version dependent, FFT choices (#22925)
Required dependency on FFTW for casacore@3.4.0:; optional for
casacore@:3.4.0, depending selection of FFTPack
2021-04-12 11:03:24 +02:00
Glenn Johnson
e27aa39427
mumax: constrain go version (#22927)
Mumax will not build with go-1.16.
2021-04-12 11:01:27 +02:00
Seth R. Johnson
b7f74f6ef6
qt: restrict python version when +webkit (#22928)
See #17270.

```
make[2]: Entering directory `/tmp/vavolkl/spack-stage/spack-stage-qt-5.14.2-63dapppjbq6vqh3le7pazsprijls7cfl/spack-src/qtwebengine/src'
/bin/sh: -c: line 0: syntax error near unexpected token `('
/bin/sh: -c: line 0: `echo Modules will not be built. Python version 2 (2.7.5 or later) is required to build QtWebEngine.'
make[2]: *** [errorbuild] Error 1
```
2021-04-12 11:00:32 +02:00
thelfer
9e702a3d44
tfel: add missing variant (#22558)
The variant was used but not defined.
2021-04-12 06:58:10 +00:00
Martin Pokorny
06f291a3cd
libsakura: Change precision for fftw dependency depending on libsakura version (#22924)
Co-authored-by: Harmen Stoppels <harmenstoppels@gmail.com>
2021-04-12 08:38:18 +02:00
Massimiliano Culpo
215d194482
ASP-based solver: assign OS correctly with inheritance from parent (#22896)
fixes #22871

When in presence of multiple choices for the operating system
we were lacking a rule to derive the node OS if it was
inherited.
2021-04-11 01:01:09 -06:00
Sreenivasa Murthy Kolam
291a2b541b
fix 22802- fix incorrect arch list for rocblas (#22881) 2021-04-10 11:17:21 +02:00
Harmen Stoppels
391ab10337
Drop cxx berkeley-db (#22899) 2021-04-09 19:30:22 -07:00
Peter Scheibel
f624ce0834
Build process output: handle UTF-8 for python 3.x to 3.7 (#22888)
We set LC_ALL=C to encourage a build process to generate ASCII
output (so our logger daemon can decode it). Most packages
respect this but it appears that intel-oneapi-compilers does
not in some cases (see #22813). This reads the output of the build
process as UTF-8, which still works if the build process respects
LC_ALL=C but also works if the process generates UTF-8 output.

For Python >= 3.7 all files are opened with UTF-8 encoding by
default. Python 2 does not support the encoding argument on
'open', so to support Python 2 the files would have to be
opened in byte mode and explicitly decoded (as a side note,
this would be the only way to handle other encodings without
being informed of them in advance).
2021-04-09 18:10:01 -07:00
Jen Herting
8d52200cbc
New package: r-ca (#22913)
Co-authored-by: Alex C Leute <aclrc@rit.edu>
2021-04-09 14:13:21 -06:00
Jen Herting
35ed2b26b5
New package: r-assertive-properties (#22914)
Co-authored-by: Alex C Leute <aclrc@rit.edu>
Co-authored-by: Alex Leute <acl2809@rit.edu>
2021-04-09 15:08:18 -05:00
Robert Mijakovic
9e6ef0e697
Flatbuffers: fixes for GCC 10+ (#22829) 2021-04-09 10:46:48 -07:00
Seth R. Johnson
ca5c2de517
swig: mark conflict and add maintainer (#22911)
Closes #22407
2021-04-09 17:38:49 +00:00
Olivier Cessenat
4d288a802e
New Package: STRIPACK (#22544) 2021-04-09 09:26:58 -07:00
Danny Taller
e21e26094e
CARE and dependencies fixed to work with +cuda (#22874) 2021-04-08 20:54:37 +00:00
Ryan Marcellino
1c5c53f505
new package: py-pytest-qt (#22878) 2021-04-08 15:07:28 -05:00