Commit graph

10881 commits

Author SHA1 Message Date
Todd Gamblin
e476a9061b
bugfix: fix emacs support on macOS (#16110)
- fix missing self.spec
2020-04-16 17:40:37 -07:00
Axel Huebl
4d25632e59
macOS: Fix emacs Linking (#16106)
* macOS: Fix emacs Linking

Fix linking issue of emacs on macOS (clang and gcc).

Applies the same work-around as conda-forge:
  b051f6c928/recipe/build.sh

Homebrew avoids this by linking against the system ncurses lib:
  https://github.com/Homebrew/homebrew-core/blob/master/Formula/emacs.rb

* ncurses: fix outdated variant comment

this comment was build on the assumption that gnutls
triggers a termlib dependency in emacs. that's not the
case, ncurses itself depends on termlib when build with
this feature.
2020-04-16 17:30:24 -07:00
Axel Huebl
ddb6e99a28 libpng: github download
libpng still has its sourceforge page but is actively been
developed on github.

since the sourceforge urls are too often down (as seen in
my nightly CI/CD tests), just switch the download source to
GitHub instead.
2020-04-16 17:27:50 -07:00
Axel Huebl
bacbaeb563
ncurses: forward termlib libs (#16101)
These libs need to be forwarded, as in ncurses `pkg-config` file.
2020-04-16 17:27:30 -05:00
Axel Huebl
bb2849002b
emacs: libxml2 deps (#16103)
emacs depends on libxml2.
2020-04-16 17:27:09 -05:00
Glenn Johnson
07a4ac67b8
Add ncurses+termlib dependency to mesa (#16038)
Mesa links against libtinfo so needs to depend on ncurses. It also needs
a little help finding the library directory so an LDFLAGS configure
option is added.
2020-04-16 13:25:28 -05:00
Amjad Kotobi
2e4e34e6cc
New version xrootd-4.11.3 (#16092) 2020-04-16 12:53:20 -05:00
Carlos Arango Gutierrez
5d7f4db9ad
singularity: updated maintainer list (#16093) 2020-04-16 18:43:38 +02:00
athanasio
f912cce7ee
openbabel: fix compilation errors (#16090)
- Disable maeparser as it is broken with CMake
- Added missing dependencies
2020-04-16 10:49:43 -05:00
Amjad Kotobi
e1777c5708
New package bonniepp added (#16091) 2020-04-16 10:49:30 -05:00
Harmen Stoppels
7dcc8a5463
Add new version 1.1.1 (#16087) 2020-04-16 09:50:48 -05:00
Antonio Arena
fd3cdffb40
New matlab versions (#16086) 2020-04-16 09:50:14 -05:00
Axel Huebl
125fc2e611
MPark.Variant: GCC 7.3.1 Conflict (#16081)
* MPark.Variant: GCC 7.3.1 Conflict

Due to an ICE in this specific patch-release of GCC, compile
errors in downstream packages should be avoided with a clean
conflict.

* Fix superfluous spaces

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Fix typo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-16 09:48:19 -05:00
Tiziano Müller
7c5fc6acea
dbcsr: expose all options, check openblas feats (#16034)
* dbcsr: expose all options, check openblas feats

* dbcsr: use Ninja to build, ensure serialized tests

* dbcsr: add myself as maintainer
2020-04-16 09:47:31 -05:00
asmaahassan90
7ac6f7fed9
Add Cubist (#16069)
* Add Cubist

* enhance recipe

* Not using OS module anymore

* remove white space

* Fix build shell

* make Flake8 happy

* use bash shell for build

* Convert it To MakefilePackage as per peer-review
2020-04-16 08:24:35 -05:00
ilbiondo
b0ec2788ab
HAL: added new package at v2.1 (#16085)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-04-16 12:19:20 +02:00
darmac
04c6a781b6
Add new package: zookeeper-benchmark (#16067)
* Add new package: zookeeper-benchmark

* refine zookeeper version

* refine zookeeper version variant

* remove unused variant
2020-04-15 23:33:45 -05:00
darmac
f66bd41d9a
Neo4j (#16068)
* Update var/spack/repos/builtin/packages/neo4j/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Add new package: neo4j

* refine neo4j package

* fix flake8 warning

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-15 20:45:46 -05:00
Harsh Bhatia
29e2475a68
update: memsurfer with python3 (#15636)
* update: memsurfer with python3

* flake8 compliance

* Update var/spack/repos/builtin/packages/memsurfer/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/memsurfer/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/memsurfer/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* removed build_type preferences at adamjstewart's suggestion

* Added build/run dependency on python3.7

as suggested by adam stewart

* more flake8 horror!

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-15 20:11:48 -05:00
Rao Garimella
05afce85fa
Upgrade MSTK versions (#16079) 2020-04-15 18:13:47 -05:00
Carson Woods
a28c127043
netcdf-cxx4: bugfix (#16080)
* Add new variants

* Fix missing config_args variable
2020-04-15 18:05:42 -05:00
Axel Huebl
d9630b572a x.org packages: mirror mixin
overhaul all x.org packages to use available mirrors.
2020-04-15 14:44:13 -07:00
wspear
999c8e3a67
Added maintainers (#16078)
Co-authored-by: Wyatt Spear <wspear@cs.uoregon.edu>
2020-04-15 16:07:57 -05:00
ilbiondo
e41ac9af8a
Sonlib (#16060)
* sonLib package as required by the HAL toolkit

* cleanup

* Update var/spack/repos/builtin/packages/sonlib/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/sonlib/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-15 16:04:06 -05:00
Kelly (KT) Thompson
fef4e80a6d
New package: py-cmake-format (#16055)
* New package py-cmake-format

* wrap long lines

* Fix package description formatting.
2020-04-15 16:01:50 -05:00
Harmen Stoppels
f072d24c98
Bump version of libtree (#16051) 2020-04-15 15:57:21 -05:00
Axel Huebl
e1e804168a Tests: Mirror Mixin Classes 2020-04-15 11:44:14 -07:00
Axel Huebl
7e5257e44a x.org: mirror mixin
According to my nightly CI/CD tests, x.org is another large provider
of software in common build chains that is often down.

Added a hand-selected amount of mirrors that is well up-to-sync.
Tested with `util-macros` that has a quite "recent" patch release.

Other packages to follow in an individual PR.
2020-04-15 11:44:14 -07:00
Federico Ficarelli
94aa368af8
Fix grcp@1.27.0: (#16052)
Current default version was missing a dependency.
2020-04-15 11:32:08 -05:00
darmac
6eee7b6bb8
Add new package: mrbench (#16062) 2020-04-15 11:25:49 -05:00
darmac
c470a8da6a
Add new package: kinesis (#16063) 2020-04-15 11:25:21 -05:00
Robert Pavel
8935406756
Added Laghos v3 to Proxy Apps v3 (#16070)
Also fixed upper bound for v2 apps
2020-04-15 11:13:07 -05:00
Michael Kuhn
a157b479c8
julea: New package (#16071) 2020-04-15 11:12:28 -05:00
ilbiondo
4afdaa5f4b
IQ-TREE: added new package at v1.6.12 (#16064) 2020-04-15 16:37:25 +02:00
ilbiondo
666bc844be
Phylobayes MPI: added new package at v1.8b (#16065) 2020-04-15 13:26:37 +02:00
Massimiliano Culpo
ff0ec9cf61
openfoam: set run environment by sourcing bashrc (#15949) 2020-04-15 12:21:02 +02:00
ilbiondo
d41e366d0d
py-sonlib: added new package (#16058)
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-04-15 10:35:01 +02:00
Dan Lipsa
fd2e6ee50f
Apply same patch to version 10. (#15963) 2020-04-14 22:30:45 -05:00
Adam J. Stewart
69f7bae8fe
libssh2: fix linking on macOS (#16012)
* libssh2: fix linking on macOS

* Fix libgit2 linkage to libssh2
2020-04-14 17:10:45 -05:00
Tyler Reddy
cba5f71eee
MAINT: Charliecloud OSX error (#16049)
* MAINT: Charliecloud OSX error

* raise an appropriate error when attempting to build
Charliecloud on Mac OSX, since it will otherwise fail
with a more confusing configure stage link check failure

* Update var/spack/repos/builtin/packages/charliecloud/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* MAINT: PR 16049 revision

* remove an unused import

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-14 15:55:10 -06:00
Sajid Ali
9a18f8b1d7
fix typo (#16043) 2020-04-14 16:44:09 -05:00
Andrew W Elble
a031bc3166
new package: py-torch-nvidia-apex (#16050) 2020-04-14 16:43:30 -05:00
Carson Woods
993491c83c
Add new variants (#16047) 2020-04-14 16:01:57 -05:00
Adam J. Stewart
293e4e80f1
py-memory-profiler: add new version (#16048) 2020-04-14 14:54:28 -05:00
Tiziano Müller
f917f7149e
cp2k: add version 7.1 (#16037)
* cp2k: add version 7.1

* cp2k: add option to use COSMA for CP2K 8+
2020-04-14 13:33:49 -05:00
Carson Woods
8edd352c22
tau: remove deprecated variants (#16041)
* Add more tau variants

* Add more tau variants

* Remove deprecated packages

* Fix flake8 issue
2020-04-14 13:33:33 -05:00
Andrew Gaspar
98cdd8777a
Add support for pre-release builds of Rust (beta, master, nightly) (#16042) 2020-04-14 12:53:42 -05:00
Adam J. Stewart
94272cc7aa
py-tokenizers: add 0.5.2 (#16039) 2020-04-14 12:41:33 -05:00
Harmen Stoppels
f393355781
libtree: new package at 1.0.3 (#16036)
* Add new package libtree

* Fix linter issues
2020-04-14 11:39:52 -05:00
Tom Payerle
e10c134745
pfft: fix to handle 'precision' variant in fftw (#16029)
* pfft: fix to handle 'precision' variant in fftw

pfft had been checking for +double, etc. in fftw spec, which no longer
are present (replaced by Multivalued variant precision).

* pfft: fix to handle 'precision' variant in fftw

pfft had been checking for +double, etc. in fftw spec, which no
longer are present (replaced by Multivalued variant precision).

(amended to use more idiomatic checks as suggested by @alalazo)
2020-04-14 11:14:20 -05:00