Glenn Johnson
26ec46e834
r-rhtslib: fix issue with git commit for v1.28 ( #31653 )
...
There is a problem with the git repo for rhtslib that apparently led to
a bad version entry during the previous round of package updates. A git
checkout on the commit also fails so use branch for most recent version.
2022-08-03 10:22:05 -06:00
Erik
d93c074491
AMReX: SYCL support ( #31233 )
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Add SYCL support, check CUDA-HIP-SYCL mutually exclusive. Require
AMReX ver 21.06+ for SYCL.
Co-authored-by: etpalmer63 <etpalmer63@users.noreply.github.com>
2022-08-03 09:54:09 -06:00
Vicente Bolea
af0e20ba9f
adios2: add v2.8.3 ( #31885 )
2022-08-03 07:25:52 -06:00
Harmen Stoppels
78364a6fe4
openssl: copy mozilla certs to work around symlink relocation issue ( #31862 )
2022-08-03 14:16:47 +02:00
Jen Herting
ba9b225ffc
zopfli: add new package ( #31879 )
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Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-03 06:02:02 -06:00
Piotr Luszczek
a5d49ef77a
plasma: add code generation step for develop version ( #31668 )
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Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2022-08-03 13:30:24 +02:00
Peter Scheibel
5603b031de
Also set FC when building hypre+fortran ( #31850 )
2022-08-03 13:12:42 +02:00
dunatotatos
a8480281d5
QTLTools: add new package ( #31881 )
2022-08-03 12:42:45 +02:00
dunatotatos
ab87cac63f
Match documentation of spack create with actual behavior. ( #31892 )
2022-08-03 10:38:56 +00:00
Jen Herting
09c56255c3
libspng: add new package ( #31878 )
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Co-authored-by: James A Zilberman <jazrc@rit.edu>
Co-authored-by: qwertos <qwertos@users.noreply.github.com>
2022-08-03 04:30:05 -06:00
Massimiliano Culpo
080a26a314
Remove macOS 10.15 from bootstrap tests ( #31890 )
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That version of the runners have been deprecated, see:
https://github.blog/changelog/2022-07-20-github-actions-the-macos-10-15-actions-runner-image-is-being-deprecated-and-will-be-removed-by-8-30-22/
2022-08-03 12:29:29 +02:00
Yang Zongze
ad09f7a1af
Make parmmg dependent on mmg and metis ( #31838 )
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1. copy source of mmg to its install tree for parmmg's build
2. add cmake args for parmmg
3. add '+mmg' when '+parmmg' for petsc
2022-08-03 01:57:53 -06:00
Adam J. Stewart
8f55c3c34a
py-pytorch-lightning: add v1.7.0 ( #31871 )
2022-08-03 09:44:27 +02:00
Ken Raffenetti
84073466e6
mpich: fix hwloc config option for version >= 4.0 ( #31874 )
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In MPICH 4.0, the config option for external hwloc changed from
--with-hwloc-prefix to --with-hwloc
2022-08-03 09:21:50 +02:00
dependabot[bot]
4aaa3841b8
build(deps): bump actions/setup-python from 4.1.0 to 4.2.0 ( #31882 )
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Bumps [actions/setup-python](https://github.com/actions/setup-python ) from 4.1.0 to 4.2.0.
- [Release notes](https://github.com/actions/setup-python/releases )
- [Commits](c4e89fac7e...b55428b188
2022-08-03 09:08:03 +02:00
Chris Green
4d2ed35552
black: fix bootstrap for Python 3.6 ( #31872 )
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* py-platformdirs: sanitize UTF-8 setup.cfg on Python 3.6
* py-platformdirs: black compliance
* Minimal fix per @adamjstewart
2022-08-02 20:49:36 -06:00
Chuck Atkins
2ed03407f4
libedit: Make sure libedit linkes to the correct terminfo lib from spack ( #31870 )
2022-08-02 20:49:14 -06:00
eugeneswalker
0462818c2e
e4s oneapi ci: build vtk-m ~openmp due to issue #31830 ( #31840 )
2022-08-02 14:45:58 -07:00
Harmen Stoppels
2ecec26188
ca-certificates-mozilla: add v2022-07-19 and v2022-04-26( #31863 )
2022-08-02 15:30:02 -06:00
eugeneswalker
b3f221185e
butterflypack %oneapi: patch CMakeLists to solve issue #31818 ( #31848 )
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* butterflypack %oneapi: patch CMakeLists to solve issue #31818
* uncomment builds affected by failing butterflypack
Co-authored-by: e <e>
2022-08-02 14:02:00 -06:00
Andrew W Elble
e11211eec6
new package: py-alphafold ( #27849 )
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* new package: alphafold
and related dependencies, depends on #27138
* [@spackbot] updating style on behalf of aweits
* fix
Co-authored-by: aweits <aweits@users.noreply.github.com>
2022-08-02 20:01:22 +00:00
Peter Scheibel
4e723b634e
Allow building with camp@0.2.3 for raja@0.14.0 and umpire@6.0.0 ( #31853 )
2022-08-02 21:39:45 +02:00
Jonathon Anderson
8c50ea9dc0
spack ci rebuild: Don't install in a login shell ( #31771 )
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On some systems the shell in login mode wipes important parts of the
environment, such as PATH. This causes the build to fail since it can't
find `spack`.
For better robustness, don't use a login shell.
In a full CI job the final spack install is run in an environment formed by scripts running in this order:
export AWS_SECRET=... # 1. Load environment from GitLab project variables
source spack/share/spack/setup-env.sh # 2. Load Spack into the environment (PATH)
spack env activate -V concrete_env # 3. Activate the concrete environment
source /etc/profile # 4. Bash login shell (from -l)
spack install ...
Whereas when a user launches their own container with (docker|podman) run -it, they end up running spack install in an environment formed in this order:
source /etc/bash.bashrc # (not 4). Bash interactive shell (default with TTY)
export AWS_SECRET=... #~1. Manually load environment from GitLab project variables
source spack/share/spack/setup-env.sh # 2. Load Spack into the environment (PATH)
spack env activate -V concrete_env # 3. Activate the concrete environment
spack install ...
The big problem being that (4) has a completely different position and content (on Leap 15 and possibly other containers).
So in context, this PR removes (4) from the CI job case, leaving us with the simpler:
export AWS_SECRET=... # 1. Load environment from GitLab project variables
source spack/share/spack/setup-env.sh # 2. Load Spack into the environment (PATH)
spack env activate -V concrete_env # 3. Activate the concrete environment
spack install ...
2022-08-02 11:45:50 -07:00
Massimiliano Culpo
6e0b7959a4
Optimize reuse from buildcaches ( #30806 )
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* database: don't sort on return from query_local
* ASP-based solver: don't build the hash-lookup dictionary twice
Building this dictionary twice and traversing all the specs
might be time-consuming for large buildcaches.
2022-08-02 11:43:14 -07:00
Massimiliano Culpo
aeac72e1e3
Style fixes
2022-08-02 10:52:52 -07:00
Massimiliano Culpo
0b832b2929
Remove line that sets non-existing attribute?
2022-08-02 10:52:52 -07:00
Massimiliano Culpo
2b3f350071
Use __slots__ for fast attribute access
2022-08-02 10:52:52 -07:00
Massimiliano Culpo
b6c8779772
Use __slots__ for fast attribute access during parsing
2022-08-02 10:52:52 -07:00
Harmen Stoppels
57e6452831
Document that reuse is higher priority than preferences in packages.yaml ( #31864 )
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Resurrect Known issues, since users ask frequently about that.
2022-08-02 18:54:41 +02:00
Harmen Stoppels
3b4d1bdd31
py-pre-commit 2.20.0
2022-08-02 05:07:41 -07:00
Todd Gamblin
415ac29665
docs: Fix outdated pre-0.18 text on build dependencies ( #31860 )
2022-08-02 11:34:58 +00:00
Melven Roehrig-Zoellner
ac3b1d77fb
gdb: add v12.1 ( #31765 )
2022-08-02 04:05:44 -06:00
Sebastian Ehlert
5533256dc6
Add mctc-lib v0.3.1 and toml-f v0.3.0 ( #31847 )
2022-08-02 08:03:00 +02:00
Adam J. Stewart
22d4612d94
Add meson Python build backend ( #31809 )
2022-08-02 07:55:41 +02:00
Adam J. Stewart
113acd4714
py-flake8: add v5.0 ( #31854 )
2022-08-02 07:44:02 +02:00
Adam J. Stewart
1a61252c64
spack checksum: black compliance ( #31851 )
2022-08-02 07:29:30 +02:00
eugeneswalker
df4e66ecde
kokkos: set CMAKE_CXX_STANDARD instead of Kokkos_CXX_STANDARD ( #31841 )
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* kokkos@develop: set CMAKE_CXX_STANDARD instead of Kokkos_CXX_STANDARD
* use CMAKE_CXX_STANDARD regardless of kokkos version
2022-08-01 23:12:32 +00:00
Peter Scheibel
c0ede0e0fa
Add c++14 support flag for xl compiler ( #31826 )
2022-08-01 22:51:02 +00:00
Adam J. Stewart
77537fab82
lerc: add libs property ( #31684 )
2022-08-01 21:42:36 +00:00
Adam J. Stewart
d9d3438637
mxnet: prefer stable release ( #31821 )
2022-08-01 20:15:46 +00:00
Weiqun Zhang
2f34556f44
amrex: add v22.08 ( #31844 )
2022-08-01 19:40:02 +00:00
eugeneswalker
0fc045392b
e4s oneapi stack: remove notes for now-fixed builds ( #31839 )
2022-08-01 12:03:39 -07:00
RichardABunt
d9c0080858
arm-forge: add v22.0.4. ( #31835 )
2022-08-01 19:53:30 +02:00
Adam J. Stewart
f018b869e6
Add support for macOS Ventura ( #31812 )
2022-08-01 16:45:56 +00:00
Adam J. Stewart
90dbfea895
python: fix clingo bootstrapping on Apple M1/M2 ( #31792 )
2022-08-01 15:48:07 +00:00
Seth R. Johnson
ae3c039908
celeritas: new package ( #31834 )
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ROOT also needs updating for downstream macOS packages
2022-08-01 10:59:09 -04:00
Seth R. Johnson
2ec17288f3
py-breathe: fix version constraints to avoid concretizing old breathe ( #31828 )
2022-08-01 10:58:54 -04:00
Adam J. Stewart
c98d367a91
CUDA: add new GCC conflict ( #31820 )
2022-08-01 14:31:07 +00:00
Erik Schnetter
e985a9884a
gperftools: make the "libunwind" variant conditional ( #31673 )
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libunwind is supported on Linux only
2022-08-01 14:17:31 +00:00
Erik Schnetter
532668af29
wi4mpi: New version 3.6.0 ( #31681 )
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* wi4mpi: New version 3.6.0
2022-07-31 22:25:35 -06:00
