* r-nloptr: Explicit depends_on(nlopt). Previously there was a hidden dependency, masked by the package's configure script.
* r-nloptr: Change spelling of variables to satisfy pyflake8
* r-nloptr: Break a long line to satisfy pyflake8
* r-nloptr: larger indent on continuation, to satisfy pyflake8
* r-nloptr: another attempt at larger indent on continuation, to satisfy pyflake8
* r-nloptr: now a smaller indent on continuation, to satisfy pyflake8
* r-nloptr: Another attempt at right amount of indent.
* r-nloptr: Another attempt at right amount of indent.
* Use the correct attributes for finding the nlopt includes and libs.
* Lines too long, split into pieces
Improve Spack's parsing of module show to eliminate some false
positives (e.g. accepting MODULEPATH when it is in fact looking for
PATH). This makes the following changes:
* Updates the pattern searching for several paths to avoid the case
where they are prefixes of unwanted paths
* Adds a warning message when an extracted path doesn't exist (which
may help catch future module parsing bugs faster)
* Adds a test with the content mentioned in #9083
This patch does not apply cleanly anymore and breaks clang/Mac builds
balay@asterix /home/balay/git-repo/github/trilinos (develop=)
$ patch -Np1 < /home/balay/git-repo/github/spack/var/spack/repos/builtin/packages/trilinos/xlf_tpetra.patch
can't find file to patch at input line 3
Perhaps you used the wrong -p or --strip option?
The text leading up to this was:
--------------------------
|--- a/packages/tpetra/core/src/Tpetra_Details_libGemm.cpp
|+++ b/packages/tpetra/core/src/Tpetra_Details_libGemm.cpp
--------------------------
File to patch:
* Added jdk version, added r-ks and r-multicool packages, made some r packages less conservative in their r version requirement
* flake8 fixes
* fix formatting in jdk version cmd
* Added type=('build', 'run') to some R package dependencies,
added some missing dependencies to r-ks. Thanks Adam.
* fix flake8 error
Due to an internal bug regarding the handling of scalars
(ndim must be 0) in numpy prior to 1.15.0, openPMD-api
will require the latest numpy 1.15+.
Since there is a small regression with datetime pickling in
1.15.0 from the required fix and spack only packages 1.15.1
currently, we depend on 1.15.1 in the recipe.
Spack originally handled environment modifications in the following
order:
1. clear environment variables
(unless Spack was invoked with --dirty)
2. apply spack-specific environment variable updates,
including variables set by Spack core like CC/PKG_CONFIG_PATH
and those set by installed dependencies (e.g. in
setup_dependent_environment)
3. load all external/compiler modules
1 and 2 were done together. This splits 1 into its own function and
imposes the following order for environment modifications:
1. clear environment variables
2. load all external/compiler modules
3. apply spack-specific environment variable updates
As a result, prepend-path actions taken by Spack (or installed Spack
dependencies) take precedence over prepend-path actions from compiler
and external modules. Additionally, when Spack (or a package
dependency) sets/unsets an environment variable, that will override
the actions of external/compiler modules.
* add 5 most recent versions and git master branch
* add trilinos, gmodel, throw, examples, optimize, symbols,
and warnings variants
* disable XSDK so that Trilinos dependencies are found.
* added py-pycogent
* flake8 edits
* added type=('build', 'run') to deps, changed py-matplotlib and mpi4py
* changed python min version to 2.6
* fixed cython to py-cython dep
* fixed mpi4py to py-mpi4py
* fixed py-sqlalchemy
* added 1.5.3 version
* fixed version 1.5.3 install
* changed deps names to reflect convention
* added variants
* changed download URL and added SHA256 hash
* fixed deps
* added github url for 1.5.3
* removed unneeded deps
* doesn't require py-setuptools
* fixed url and added py-setuptools specific to version 1.9
* fixed variant names and changed cython to normal dependency instead of variant
* removed cython dep, failed to build when it was present. Changed variant name 'mpi4py' to 'mpi' and changed sqlalchemy variant name to mpi
* fixed dependencies and added py-pymysql dep
* added setup-environment step
* changed download url for 1.5.3 to pypi
* fixed flake8 issue
* updated
* added changes
* Addition of latest maestrowf releases.
* Addition of filelock to dependencies.
* Addition of when clause to depends_on for filelock and tabulate.
* Correction of the tar url.
* Add 'extra_env' argument to Executable.__call__: this will be added
to the environment but does not affect whether the current
environment is reused. If 'env' is not set, then the current
environment is copied and the variables from 'extra_env' are added
to it.
* MakeExecutable can take a 'jobs_env' parameter that specifies the
name of an environment variable used to set the level of parallelism.
This is added to 'extra_env' (so does not affect whether the current
environment is reused).
* CMake-based Spack packages set 'jobs_env' when executing the 'test'
target for make and ninja (which does not use -j)
Update the version numbers and now depend on
the develop version of dyninst because of a
feature in openspeedshop depends on new code
in the dyninst develop tree. Without dyninst
develop, openspeedshop will not build.
