Make neuron package more generic
* find the bin directory dynamically for use in run_env and spack_env
* replace filter_compilers after install with filter_compiler_wrappers
* update checksum for _current_ 7.5 version
* make +python conflict with ~shared
* prepend the architecture specific lib directory to the LD_LIBRARY_PATH
Signed-off-by: Ricardo Silva <ricardo.silva@epfl.ch>
Fix installs as "root" user for the last libSplash release.
Missing quoting of string compares resulted in a CMake error
when run as root (e.g. in a Docker build).
This updates Cray.setup_platform_environment to use cray-specific
pkgconfig paths so that all providers of 'pkgconfig' have access
to them (previously the 'pkg-config' provider had this but the
'pkgconf' provider did not).
* [OpenMPI] Add the 'headers' property. This removes some redundant
headers from sub-directories, returned by the default '.headers'
handler.
* [OpenMPI] In the .headers property, add a fallback to search all of
prefix for the mpi.h header. Recommended by @junghans to support some
external configurations, see #7268.
* add verilator package
* try to add environment variable and include folder
* manually install existing scripts and patch out spack's CXX wrapper
* added some comments
* make flake8 happy
Adds Google's new cpu_features library.
Install was added recently, so don't take the `0.1.0` release but
the current `master` until a new version is published.
* Combined llvm and llvm-lld: removed the separate llvm-lld package
and added llvm-lld as an optional add on to the llvm package (the
way several other llvm tools are maintained e.g. lldb)
* Added more lld hashes to llvm package
* The 'CppBackend' target doesn't exist for version 3.9.0 or later
so exclude it for later versions
* Was incorrectly specifying 'sparc' as a target for the 'sparc'
architecture - needed to specify 'Sparc'
* Fix issue #7248 building llvm: don't make the LLVMDemangle target
for llvm < 4.0.0
* No longer need to patch CMake. Using CMAKE_CXX_FLAGS to include BLAS/LAPACK/MKL header files properly.
* Backport two patches to QMCPACK versions prior to 3.3.0: https://github.com/QMCPACK/qmcpack/pull/621, https://github.com/QMCPACK/qmcpack/pull/623
* Insufficient to include lapack_dir in CMAKE_CXX_FLAGS, CMAKE_C_FLAGS is also needed.
* Make patched Espresso a default variant instead of a hard dependency. This is easier on computer architectures where Espresso is hard to build.
* Fix patching with QE variant. Now using correct form of patch command.
* Add QMCPACK v3.4.0
* Backport patch to QMCPACK versions prior to 3.3.0: https://github.com/QMCPACK/qmcpack/pull/643
Yaml-cpp hasn't tagged a release in over 2 years, yet they have fixed
many things and now have the ability to use find_package in CMake.
Since we use this feature in Nalu, we require the latest yaml-cpp
until they tag a new release. I have also deprecated the now
unnecessary ENABLE_INSTALL flag.
* Added a package for the MDAnalysis toolkit.
* Adding a package for the Python virtualenvwrapper pacakge. Included
dependent virtualenv-clone and stevedore packages. Updated py-pbr with
a new version to support this.
* Added extra necessary dependencies and fixed the file download paths.
* Added a package for the MDAnalysis toolkit.
* Added a new package for pygpu, which is the python front end of the
libgpuarray. Additionally changed the dependency for theano so that
it properly picks up the pygpu library.
* Added the libcheck package. Fixed flake8 errors in py-pygpu recipe
and removed spurious dependency on cudnn for libgpuarray.
The edit phase of cbench was used to set environment variables. Though
this works, the variables set this way are not dumped to build.env.
This commit fixes the issue by setting those variables in the
`setup_environment` function.
* [SUNDIALS] Add the 'headers' and 'libs' properties, plus a couple of
small tweaks.
* [SUNDIALS] Revert incorrectly changed conflicts() directive. Fix style.
Fixes#5189
When working with non-normalized paths containing ".." on some
file systems, Spack was found to encounter a permission error when
writing to the path. This normalizes a path written by the
intel-parallel-studio package and also normalizes all paths
written by the license install hook (for all packages) to avoid
this issue for intel-parallel-studio.
Adds the first stable API release of ADIOS2, v.2.1.0.
Also adds a missing `pybind11` CMake flag for proper Python
selection (needed in both the new and previous version).
To accommodate build systems on Darwin which look for glibtool/ize,
#7060 attempted to provide glibtool/ize symlinks for libtool/ize
but accidentally created the same symlink twice. #7073 reverted this
and replaced libtool/ize with glibtool/ize on Darwin. This led to
#7163 since AutotoolsPackages depend on the presence of the 'libtool'
binary, so this returns to the approach of #7160 but makes the
correct symlinks.
XBraid installs `libbraid.a`, but the default `libs` method
implementation will search for `libxbraid`, which does not exist. This
commit fixes the behavior of the `libs` method for the `xbraid`
package by overriding package's `libs` method.
Prior to this commit, running `spack module refresh` with `gdbm`
installed throws the warning:
```console
==> Warning: Could not write module file [/Users/oxberry1/spack/share/spack/lmod/darwin-sierra-x86_64/Core/gdbm/1.14.1.lua]
==> Warning: --> global name 'spack_cc' is not defined <--
```
This warning is repeated for every `gdbm` installation in Spack.
The cause of the issue seems to be the same as in spack/spack (#6089):
using `spack_cc`, `spack_cxx`, or similar inside `configure_args`
causes the warnings to throw when module files are generated.
Moving the use of `spack_cc` into `setup_environment` seems to fix the
problem, even though it's a bit of a kludge.
Running `spack module refresh -m lmod --delete-tree -y` throws the
following warning:
```console
==> Warning: Could not write module file [/Users/oxberry1/spack/share/spack/lmod/darwin-sierra-x86_64/openblas/0.2.20-ibhtl5q/clang/5.0.1/ipopt/3.12.9.lua]
==> Warning: --> global name 'prefix' is not defined <--
```
This warning arises because the variable expansions in
`spack.modules.BaseFileWriter` occur at module/package scope. Even
though `prefix` is an argument to `install` methods in e.g.,
`MakefilePackage`, so using this argument within package methods is
legal, doing so defeats the introspection logic in
`spack.modules.BaseFileWriter`. Replacing `prefix` with `self.prefix`
resolves the problem, because the introspection logic in
`spack.modules.BaseFileWriter` can use introspection to query IPOPT's
prefix.
