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Author SHA1 Message Date
Simone Bnà
e2908af9b4 Catalyst package (#6834) 
* catalyst: added catalyst package

* catalyst: missing libx11 and libxt dependencies

* catalyst: added std cmake args

* catalyst: override paraview git describe cmake variable

* catalyst: fixed flake8 errors
 2018-01-13 22:20:39 -06:00
Michael Kuhn
df7876ab54 Do not construct path to perl command manually (#6927) 
Instead, use spec['perl'].command.path.
 2018-01-13 22:10:42 -06:00
healther
589ea856a5 Add PyNN 0.9.1 (#6926) 2018-01-13 22:10:10 -06:00
healther
b3c96e2e40 Update checksum for version 0.5.3 of yaml-cpp (#6924) 2018-01-13 22:09:36 -06:00
healther
47b554a959 Add py-pyflakes versions up to 1.6.0 (#6923) 2018-01-13 22:09:17 -06:00
healther
b87f9ae5d4 Add py-pycodestyle versions up to 2.3.1 (#6922) 2018-01-13 22:08:51 -06:00
healther
7c4a193b3f Update py-neo to 0.5.2 (#6921) 2018-01-13 22:08:38 -06:00
healther
a2d7939e27 Add py-mccabe versions up to 0.6.1 (#6920) 2018-01-13 22:08:18 -06:00
healther
176814373c add version 1.26 to py-git-review and fix run_env (#6919) 
* Update py-git-review to version 1.26.0

* Fix py-git-review package

TypeError: object of type 'Version' has no len()
 2018-01-13 22:08:05 -06:00
healther
c6a7979cfd Update py-flake8 to 3.5.0 (#6918) 2018-01-13 22:07:46 -06:00
healther
8c648a73bc py-doxypy conflicts python3 (#6916) 
* py-doxypy conflicts python3

* change conflicts to depends_on
 2018-01-13 22:07:14 -06:00
healther
25bcabec98 Update py-autopep8 to 1.3.3 (#6914) 
* Update py-autopep8 to 1.3.3

* Update package.py
 2018-01-13 22:05:44 -06:00
Michael Kuhn
d8b03d1e37 glib: Fix python handling (#6910) 
Newer versions of glib require python. Fix up the python sbangs the same
way we already fix up the perl ones.

Fixes #6899
 2018-01-13 08:50:06 -06:00
healther
e8df0ddce4 add patch for gccxml with gcc@5: (#6913) 2018-01-13 08:46:00 -06:00
healther
715a173688 Update py-elephant to 0.4.1 (#6917) 2018-01-13 08:44:43 -06:00
scheibelp
278901c02c
Handle test dependencies that are python extensions (#6904) 
See #6794

This fixes cases where test-only dependencies were omitted from
consideration when modifying the environment at build time. This
includes an update to the python package definition to add
testing-related python extensions to its specialized environment
setup.
 2018-01-12 19:02:54 -08:00
Geoffrey Oxberry
761b8f76d2 coinhsl: add version 2014.01.10 (#6909) 
* coinhsl: add version 2014.01.10 (stable)

* coinhsl: make 2014.01.10 preferred version

Make Harwell Subroutines Library for IPOPT version 2014.01.10 the
preferred version because it is the latest stable version released.

* coinhsl: add option to link w/ BLAS libraries
 2018-01-12 17:27:52 -06:00
健美猫
9e3f8c0d79 A new package: ethminer. (#6908) 2018-01-12 07:50:07 -06:00
Michael Kuhn
070bcab7f2 libbson, libmongoc: Update to 1.9.1 (#6900) 2018-01-11 10:19:44 -06:00
stefanosoffia
5dd7baa61d Updated misc devel tools. (#6897) 2018-01-11 10:06:53 -06:00
Gregory Lee
5d49fe4b4c fix ips 2018 vtune directory name (#6893) 2018-01-11 09:51:14 -06:00
lingnanyuan
637165eef8 r-biocstyle: Create new package. (#6503) 
* r-biocstyle: Create new package.

* r-biocstyle: add version constraints.
 2018-01-10 23:13:31 -06:00
lingnanyuan
88d9e6bd21 r-bookdown: Create new package. (#6504) 
* r-bookdown: Create new package.

* r-bookdown: add version constraints.
 2018-01-10 23:13:12 -06:00
lingnanyuan
d2eecf5774 r-rprojroot: Create new package. (#6505) 
* r-rprojroot: Create new package.

* r-rprojroot: add version constraints.

* r-rprojroot: Add list_url.
 2018-01-10 23:12:54 -06:00
lingnanyuan
384b8f43a2 r-rmarkdown: Update version to 1.7 (#6506) 
* r-rmarkdown: Update version to 1.7

* r-rmarkdown: add version constraints.
 2018-01-10 23:12:35 -06:00
snehring
d07b83237d discovardenovo: adding new package (#6888) 2018-01-10 20:40:41 -06:00
jkelling
da01c8a541 package libharu: Add build deps (#6883) 
... libtool,autoconf,automake
 2018-01-10 12:28:32 -06:00
stefanosoffia
8a7525064d Updated i3 dependencies. (#6885) 2018-01-10 11:02:07 -06:00
Adam J. Stewart
db42d080f7
Geant4: fix qt dependency (#6828) 2018-01-10 09:48:15 -06:00
Adam J. Stewart
ab4e20a49c
Older versions of libiconv don't work with newer versions of GCC (#6829) 2018-01-10 09:47:33 -06:00
Levi Baber
c1117f0593 opa-psm2: new package (#6874) 
* opa-psm2: new package

* opa-psm2: installs now. think the module file needs work

* opa-psm2: module file seems good now

* opa-psm2: remove fixme

* opa-psm2: flake8 fixes

* opa-psm2: removing unnecessary make in install phase
 2018-01-10 09:45:34 -06:00
健美猫
b733ce1e5f bcftools is a AutotoolsPackage. (#6881) 2018-01-10 09:45:05 -06:00
Geoffrey Oxberry
77a29f09f9 emacs: on darwin, do not build Cocoa app (#6882) 
Building emacs on darwin throws an error when trying to build an Emacs
app in the nextstep/Emacs.app path of the build tree. For now, disable
building this app.

It's possible to enable building the app also; Homebrew offers options
to this effect, and also adds Mac-specific options for starting the
emacs daemon. However, for the sake of simplicity and getting a
workable up-to-date emacs installation on my machine as quickly as
possible, this commit focuses on a minimal viable modification.
 2018-01-10 09:44:35 -06:00
健美猫
ac5b5724c6 Add a new package: unblur. (#6867) 
* Add a new package: unblur.

* Add a new package: unblur.

* Add a new package: unblur.

* Add a new package: unblur.

Conflicts:
	var/spack/repos/builtin/packages/unblur/package.py

* Add a new package: unblur.
 2018-01-10 09:35:00 -06:00
Adam J. Stewart
8555947e05 Explicitly cast Version to str in openfoam-org (#6880) 2018-01-10 13:48:22 +01:00
Adam J. Stewart
4d4fc8760d Fix tests for git package (#6869) 2018-01-10 13:47:38 +01:00
Yifan Zhu
f498f52a2d casper: new package (#6873) 
* casper: create package

* jellyfish: added version 2.2.7

* casper: new package

* casper: depends on jellyfish 2.2.3 or higher

* casper: moved depends_on above install

* casper: updated package.py

* fixing download url for 1.11.1

* casper: set up environment

* casper: add conflicts gcc@7.1.0, cannot install with 7.1.0

* capser: flake8 error corrcted

* casper: create package

* jellyfish: added version 2.2.7

* casper: new package

* casper: depends on jellyfish 2.2.3 or higher

* casper: moved depends_on above install

* casper: updated package.py

* fixing download url for 1.11.1

* casper: set up environment

* casper: add conflicts gcc@7.1.0, cannot install with 7.1.0

* capser: flake8 error corrcted
 2018-01-09 22:07:05 -06:00
Eric
15111177a2 prodigal: Create new package (#6870) 2018-01-09 12:57:58 -06:00
健美猫
2dd0749b5f A new package: jbigkit. (#6847) 
* A new package: jbigkit.

* A new package: jbigkit.

* Add a new package: jbigkit.
 2018-01-09 10:03:31 -06:00
BenBrands
9ef39163d8 changed url for astyle (#6863) 
* changed url for astyle

* use SourceForge
 2018-01-09 09:40:27 -06:00
George Hartzell
ffa20d2171 [WIP] Fix git gettext/libintl handling (builds on ubuntu) (#6859) 
* Fix git on ubuntu, first cut

Spack needs to pass information about where the linker
can find `libintl`.  We're currently using `LDFLAGS` to do so.
The `LDFLAGS` info is pasted into the command line upstream
of the a file (`libgit.a`) that includes unresolved symbols that
need that library.  This fails on Ubuntu, although it seems to
work on CentOS (see #6841).

This change allows git to build on a Ubuntu 16.04.3 droplet.

TODO: test on other platforms...

* Add a bit of useful commentary
 2018-01-09 09:40:09 -06:00
Federico Ficarelli
43f98dc0d5 Fix missing dependency in ghostscript (#6866) 2018-01-09 08:43:53 -06:00
Adam J. Stewart
eb42013727 Remove std_cmake_args from VTK definition (#6856) 2018-01-09 08:56:00 +01:00
Eric
697f1061c5 perl-xml-simple: Create new package (#6849) 
* perl-xml-simple: Create new package

* perl-xml-simple: fix homepage url
 2018-01-08 19:36:04 -06:00
Eric
785389be58 perl-digest-md5: Create new package (#6852) 2018-01-08 19:35:48 -06:00
Eric
c99ad2b4a5 barrnap: Create new package (#6855) 2018-01-08 19:35:31 -06:00
Eric
e72c5ee8a3 perl-swissknife: Create new package (#6851) 2018-01-08 18:46:51 -06:00
Eric
6cf530f28d perl-time-piece: Create new package (#6853) 2018-01-08 18:46:16 -06:00
Eric
8935a0b90b perl-text-unidecode: Create new package (#6854) 2018-01-08 18:45:58 -06:00
Axel Huebl
257d23581c Cleanup: Remove Dbl Brackets (#6848) 
Remove unnecessary double brackets in ADIOS2 and gearshifft packages.
 2018-01-08 19:42:51 +01:00