Commit graph

11268 commits

Author SHA1 Message Date
Elizabeth Fischer
7b31f5474b
grass: new versions (#16181)
* grass

* Update var/spack/repos/builtin/packages/grass/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-04 16:25:19 -05:00
Axel Huebl
87f78137a5
LAPACKC++: added "shared" variant (#16419)
We can control the shared/static build of CMake and the default in
Spack is to build shared libraries. The old, uncontrolled default
of this package is a static build.
2020-05-04 09:39:20 +02:00
Dr. Christian Tacke
d5adad6953
singularity: added missing dependencies (#16430)
See:

https://sylabs.io/guides/3.5/user-guide/quick_start.html#install-system-dependencies

for pkg-config and libseccomp
2020-05-04 09:02:38 +02:00
Nichols A. Romero
860c54335d
QE-to-QMCPACK wave function converter relocation + some bug fixes (#16422)
* Revise description of patch variant.

* Add qmcpack variant. Apply QE-to-QMCPACK wave function converter patch.

* Clean-up, document, and re-organize.

* ELPA patches did not nead when=`+patch` variant.

* Need to be more precise here with QE version numbers.

* satisfies seems to be necessary here in order to get correct behaviour.

* Buglet with zlib link line.

* Update var/spack/repos/builtin/packages/quantum-espresso/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/quantum-espresso/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Fix for QE-to-QMCPACK wave function converter w.r.t. QE 6.3. Also adjust comments to reflect changes in code.

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-05-03 14:53:01 -06:00
Adam J. Stewart
caad59e7c7
NumPy: add 1.18.4 (#16441) 2020-05-03 13:29:15 -05:00
vvolkl
ed9e19df06
Add new HEP package: fastjet (#16439)
* [fastjet] initial commit

* [fastjet] remove beta versions
2020-05-03 13:27:18 -05:00
vvolkl
3c2f46aabf
Add new HEP package: Delphes (#16440)
* [delphes] initial commit

* [delphes] formatting fixes
2020-05-03 11:13:03 -05:00
Adam J. Stewart
1af31d24fd
GEOS: add new version (#16437) 2020-05-02 23:38:46 -05:00
Adam J. Stewart
eb4451dd1e
py-shapely: new version, Python 3.7 fix (#16438) 2020-05-02 23:38:30 -05:00
Adam J. Stewart
2e63e08192
py-cartopy: update package, fix PROJ.6 support (#16436) 2020-05-02 20:13:12 -05:00
Matthias Diener
1bc104e00e
colordiff: add version 1.0.19 (#16431) 2020-05-02 13:26:56 -05:00
Jonathon Anderson
08f88b4be6
Add a gpfs variant to openmpi package (#15793)
Open MPI will detect and link against GPFS if it is present
on the system. This variant allows this to be disabled, even
if GPFS is present.
2020-05-02 11:07:50 -05:00
Sajid Ali
adafdf0644
add hydra/pmix conflict (#16428) 2020-05-01 20:51:54 -05:00
Matthias Diener
668dcb78a1
py-opentuner: add version 0.8.2 (#16423) 2020-05-01 20:50:54 -05:00
Jen Herting
acabe2deba
[ncbi-magicblast] added version 1.5.0 (#16424) 2020-05-01 20:50:26 -05:00
Justin S
cf59220edc
stata: add version 16 (#16425) 2020-05-01 20:50:13 -05:00
mic84
c7552c0c72
amrex: New version 20.05 (#16427) 2020-05-01 20:47:18 -05:00
Kelly (KT) Thompson
b5b7ef2ce6
Provide update for py-pyside2 version 5.14.2.1. (#16426) 2020-05-01 17:32:31 -05:00
Justin S
f38820f89c
tbl2asn: new package at 20200301 (#16280)
* tbl2asn: new package at 20200301

* tbl2asn: remove unused url

* tbl2asn: use spack decompression, fix permissions

* tbl2asn: change version
2020-05-01 16:40:09 -05:00
Toyohisa Kameyama
40f70c4d4f
mt-metis: New package. (#16380)
* mt-metis: New package.

* variant to 1 line.

* delete useless lines.
2020-05-01 10:51:27 -05:00
Matt Larsen
69a0fbd2cb
raja: add awareness of the cuda architecture (#16377) 2020-05-01 10:07:12 +02:00
Jean-Laurent Picard
4f6c4743e3
arborx: fix build with new kokkos-legacy (#16413) 2020-05-01 09:30:27 +02:00
Christoph Junghans
7a56e6fce1
gromacs: add v2020.2 (#16408) 2020-04-30 19:01:07 -06:00
Satish Balay
4c69bc9d16
amrex: repo went through history rewrite - so use updates sha256sums (#16379) 2020-04-30 15:13:45 -05:00
Michael Kuhn
a24a12f229
sqlite: Add 3.31.1 (#16404) 2020-04-30 15:12:51 -05:00
Michael Kuhn
efbd8c1555
readline: Fix homepage (#16403) 2020-04-30 15:12:38 -05:00
Michael Kuhn
9920684600
gettext: Add 0.20.2 (#16402) 2020-04-30 15:12:26 -05:00
Michael Kuhn
f04b0d99a8
glib: Add 2.64.2 (#16401) 2020-04-30 15:12:13 -05:00
Michael Kuhn
d2fc61a019
libffi: Add 3.3 (#16400) 2020-04-30 15:12:00 -05:00
Michael Kuhn
c2704a6037
perl: Add 5.30.2 (#16396) 2020-04-30 15:11:46 -05:00
Michael Kuhn
7adcb23978
libxml2: Add 2.9.10 (#16399) 2020-04-30 14:29:50 -05:00
Michael Kuhn
15c1fbc677
meson: Add 0.54.1 (#16398) 2020-04-30 14:29:36 -05:00
Michael Kuhn
6855e8e10f
pcre: Add 8.44 (#16397) 2020-04-30 14:29:24 -05:00
Ben Bergen
6d7daf0def
Resolves: https://github.com/spack/spack/issues/16394 (#16395)
Build problem with gcc 10.x
2020-04-30 11:16:00 -06:00
Adam J. Stewart
b55b7d5707
Fix kokkos-kernels tuple unpacking (#16393) 2020-04-30 11:36:50 -05:00
Christoph Junghans
cfb307b8e7
lammps: fix build with kokkos (#16390) 2020-04-30 10:29:08 -06:00
Adam J. Stewart
6c24142ebd
Fix coreutils configure_args (#16391) 2020-04-30 11:13:23 -05:00
Christoph Junghans
74c9ba551a
cabana: add v0.2 and fix kokkos deps (#16389) 2020-04-30 09:49:02 -06:00
darmac
b0ecaa1093
Add new package: bashtop (#16383) 2020-04-30 10:45:48 -05:00
Satish Balay
b2df39ea3a
petsc: switch hdf5 spec from --with-hdf5-dir to --with-hdf5-lib (#16376)
This way - we can detect and use hdf5:hl,fortran - if enabled, but not require it as a dependency
2020-04-30 10:40:25 -05:00
Satish Balay
3a3f871718
xsdk: update to mfem and py-petsc4py changes (#16378)
mfem variant hypre is now rolled into variant mpi - so update spec accordingly

mfem@4.0.1-xsdk+superlu-dist is broken and unsupported - so disable it

with the addition of py-petsc4py@3.13.0 - conretizer gets confused and is not picking py-petsc4py@3.12.0 as a compatible dependency with petsc@3.12. So manually specify it.
Also depends_on('py-libensemble@0.5.2+petsc4py ^py-petsc4py@3.12.0' causes concretizer to hang forever
2020-04-30 10:33:02 -05:00
Christoph Junghans
d5d4e16f3d
graphviz: fix cairo dep (#16387) 2020-04-30 10:29:20 -05:00
Christoph Junghans
f005ec016b
kokkos: fix typos (#16388) 2020-04-30 09:09:13 -06:00
Jeremy
598c233f78
Update kokkos for new 3.x build systems (#16358)
* change old Makefile-based Kokkos to kokkos-legacy

* add Kokkos 3.x packages

Co-authored-by: Jeremiah J Wilke <jjwilke@kokkos-dev-2.sandia.gov>
2020-04-30 08:13:47 -06:00
Teodor Nikolov
9627cbbe1b
lapackpp and blaspp: added packages (develop branch) (#16373) 2020-04-30 16:05:45 +02:00
Toyohisa Kameyama
54b71b2b69
JHPCN-DF: added package at v1.1.0 (#16384) 2020-04-30 15:03:35 +02:00
Benoit Coste
6c751f931c
py-pyquaternion: added package at v0.9.5 (#16386) 2020-04-30 14:50:28 +02:00
Carson Woods
d12e588c60
charliecloud: add more checksummed versions (#16146)
* Add more checksummed versions

* Remove all versions not supported by autotools build method

* Add old build system for older versions

* Add suggested changes
2020-04-29 17:22:22 -05:00
Adam J. Stewart
eef75ddd45
py-mypy: setuptools needed at run-time (#16375) 2020-04-29 13:50:34 -05:00
Dr. Christian Tacke
0385e84775
boost: Patch for boostorg/process/issues/116 (#16371)
Patch for "Unable to compile code using boost/process.hpp"
See: https://github.com/boostorg/process/issues/116
2020-04-29 12:53:58 -05:00
darmac
42d7fd30c4
Add new package: brpc (#16309)
* Add new package: brpc

* change a patch for brpc

* refine brpc version

* refine brpc patch constraint
2020-04-29 09:58:35 -05:00
darmac
5697894b22
Add new package: graylog2-server (#16370) 2020-04-29 09:58:09 -05:00
darmac
890059c635
Add new package: libconfuse (#16368) 2020-04-29 09:57:38 -05:00
darmac
35b9901fa0
Add new package: fping (#16367) 2020-04-29 09:57:16 -05:00
darmac
0d9b003169
Add new package: trident (#16342)
* Add new package: trident

* remove unused source code
2020-04-29 08:20:05 -05:00
Jonathan R. Madsen
39bbe8f9d4
Update timemory to support new dependencies and expose more build options (#16241)
* Update timemory/package.py to support new dependencies and expose more build options

* Added missing 'use_arch' option handling

* Fixes for python 2.6

* Fix pyflake error F632

* F632 flake fixes

* Update package.py

* Update package.py

* 80 char width + added extra conflicts + fixed kokkos_modules reference

* 79 char width

* Removed submodule builds

- added allinea_map variant
- disabled caliper by default
- added ompt_{standalone,llvm} variants

* flake8 updates

* 79 char width
2020-04-29 08:19:17 -05:00
Joseph Ciurej
97e67b385c
ffmpeg: add v1.0.10, v2.8.15; add '+avresample'; improve variant handling (#16359)
* ffmpeg: add older versions (i.e. 2.8.15, 1.0.10), add 'avresample' variant

* ffmpeg: update variant handling to support older versions (i.e. 2.8.15, 1.0.10)
2020-04-29 09:33:22 +02:00
Joseph Ciurej
c37857f995
openscenegraph: add v3.4.0, v3.4.1; add '+ffmpeg' (#16360)
* openscenegraph: add v3.4.0/3.4.1, update versioning to use git, improve dependency handling (esp. for ffmpeg, opengl)

* openscenegraph: add '+ffmpeg' variant, add 'jasper' dependency, clean up cmake config variables

* openscenegraph: reverted fetches to use checksums to improve reliability

* openscenegraph: add a few more explicit dependencies (e.g. png, tiff, glib).
2020-04-29 09:27:27 +02:00
Ryan Mast
6c0d4fb5e5
helics: fixed dependency on boost (#16363) 2020-04-29 09:10:33 +02:00
Dr. Christian Tacke
67ad8ed546
root: added v6.20.04, better variant handling (#16362)
* Add version 6.20.04
* This version still requires numpy for +python
* ROOT 6.20 renamed the define from python to pyroot:
  Add appropiate handling
2020-04-29 09:05:17 +02:00
Adam J. Stewart
8b4b7aacbb
py-pandas: add 1.0.X release (#16366) 2020-04-28 23:14:17 -05:00
Ryan Mast
25c17e0ca6
helics: Add version 2.5.0 (#16364)
Add HELICS package version 2.5.0
2020-04-28 19:21:22 -05:00
Hadrien G
2d02769bea
[dd4hep] Fix inappropriate patch line break (#16361)
Sometimes, text editors automate things a little too much...
2020-04-28 19:17:13 -05:00
Jeffrey Salmond
703111c01b
Add amgx (#16357)
* add amgx package

* add amgx variants for mkl and magma support

* fix typo in cmake option

* flake8 fix formatting

* Apply suggestions from code review - use mkl virtual provider

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Apply suggestions from code review - fix copypasta

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-28 14:36:55 -05:00
Carson Woods
6e63ff1688
netcdf-fortran: add new variants (#16046)
* Add additional variants to netcdf-fortran

* Fix duplicate variant

* Clean up variants based on review feedback

* Addtional variant changes

* Convert jna variant to single line

* Fix proper version constraints for jna variant
2020-04-28 11:15:19 -05:00
Stephen McDowell
4ed5cee940
jsoncpp add 1.9.2, patch %clang@10 for implicit conversion (#16153)
* add 1.9.2, patch %clang@10 for implicit conversion

* flake8: "fix" hanging indent (squash: because is that really more readable?)
2020-04-28 11:14:36 -05:00
darmac
af9c3b31de
Add new package: figlet (#16355) 2020-04-28 11:12:50 -05:00
Cameron Smith
d3ffb12274
kokkos: add versions 3.0.00 and 3.1.00 (#16354) 2020-04-28 11:11:50 -05:00
darmac
48de131b08
bazel: support for aarch64 platform (#16350) 2020-04-28 11:07:46 -05:00
darmac
a1e03151b2
Add new package: etcd (#16348) 2020-04-28 11:07:02 -05:00
darmac
2f88af4d2c
Add new package: kubernetes (#16347) 2020-04-28 11:06:24 -05:00
Jeffrey Salmond
4aed5daeba
adjust petsc to build cuda only when requested explicitly (#16275)
* adjust petsc+cuda to build cuda only when requested explicitly

* activate petsc library support only when explicitly requested

* flake8 fixes
2020-04-28 10:52:39 -05:00
Carson Woods
27b7d4bd21
openmpi: add additional variants (#16044)
* Add variants to OpenMPI

* Add variant for toggling runpath

* Fix typo

* Remove blank line whitespace
2020-04-28 10:51:30 -05:00
Tom Payerle
aec3589679
netcdf-c: Patch to support hdf linked against libtirpc (#15994)
If hdf was built with +libtirpc, we need to add -ltirpc to our link
flags.
2020-04-28 09:43:53 -05:00
Christoph Junghans
9615ac42cf
votca-*: fix stable deps (#16339) 2020-04-28 13:08:00 +02:00
darmac
cf31472e5a
cassandra: added v3.11.6 and dependency on Java (#16341) 2020-04-28 13:04:31 +02:00
darmac
76e9171d25
colordiff: modified url to fix 404 error (#16349) 2020-04-28 10:59:52 +02:00
Christoph Junghans
fcbf0545c7
votca-*: add stable version (#16336)
* votca-*: add stable version

* votca-*: add myself as maintainer
2020-04-27 20:43:34 -05:00
Tiziano Müller
3115b5c758
CP2K: arch file improvements and blas-dependency simplification (#16074)
* cp2k: prettify arch-file, call pkg-config directly

this allows to re-use the arch-file without having to load the complete
Spack environment, for example after a dev-build

* cp2k: use consistency check instead of blas lib enum

this makes using other BLAS/LAPACK implementations possible without
explicitly adding support for them

* cp2k: add basic support for Cray and XL Compilers, correct Intel fp mode

* cp2k: add myself as maintainer

* cp2k: use "master" to denote the git version

* cp2k: use spack_cc/fc/cxx when possible, set CXX explicitly

* cp2k: set __MKL when using the MKL, not just the Intel compiler

* cp2k: drop self. when referencing spec where possible

* cp2k: add forgotten elpa+openmp dep

* cp2k: set C++14 for recent versions
2020-04-27 19:42:33 -05:00
Dr. Christian Tacke
f5a5a11c77
abseil-cpp: new Version, Build Shared Library (#16125)
* Add new version: "Abseil LTS branch, Feb 2020, Patch 1"
* Build shared libraries by default with new version
* Older versions do not support building shared libraries
2020-04-27 19:41:15 -05:00
Diego Magdaleno
f1a7fb2ffc
Update bat and make the url dynamic (#16127)
* Update bat and make the url dynamic

- Now depending on the version it will calculate
the url

- This also fixes a weird issue that was reported
on Darwin, back when I reported that Rust wasn't
linking properly on Darwin #15887 on the comment
by hartzell i was also experiencing this issue

* Remove unnecessary stuff

- Removes the need for LLVM

- Removes the need for version calculation.

* Keep the versions on 1 line

* Pass flake8 tests
2020-04-27 19:40:35 -05:00
Diego Magdaleno
cd56882998
Add a new package Exa (#16126)
* Add new package exa

* Format and fix a silly typo

* Fix SHA256 SUM and make URL calculation dynamic

* Remove unnecessary URL calculation

* Update package.py

* Keep the version on 1 line

* Pass flake8 checks
2020-04-27 19:39:09 -05:00
asmaahassan90
b04b6e1449
Add ShengBTE (#16154)
* Add ShengBTE

Adding a new package; ShengBTE. I tried adding it a MakefilePackage, and use build_directory = 'Src', but it was as if the build_directory gets ignored and make complains about target not found. and using the make funtion here instead of os.system, I get errors that config.f90 is not found which is already available under Src as well.

* more enhancmenets

fix lint; use mkl spec; use build_directory variable

* one more fix

* Use Makefile template

* Update var/spack/repos/builtin/packages/shengbte/package.py

use mkl instead of intel-mkl as a dependency

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/shengbte/package.py

update recipe as suggested by reviewer

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* enhance recipe

remove white space; changes as suggested by reviewer

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-27 19:38:15 -05:00
Joseph Ciurej
f314ff6639
python : fix SSL for older Python versions (#16217)
* Fixed SSL pathing for older versions of Python (i.e. @:3.6.999).

* Fixed an issue where the 'python~ssl' variant wasn't properly being respected.

* Improved the '~ssl' patch by making it functional instead of diff-based (enables 3.X.Y patches).

* Fixed comment formatting to satisfy 'flake8' style requirements.
2020-04-27 19:36:33 -05:00
Tim Haines
204179eed3
elfutils: Add version 0.179 (#16334) 2020-04-27 19:26:28 -05:00
Christoph Junghans
8060bc6523
graphviz: add poppler support (#16331)
* graphviz: add poppler support

* graphviz: actually needs poppler+glib

* poopler: fix glib build, new version
2020-04-27 15:18:03 -06:00
Mark W. Krentel
08e53b67f8
hpcviewer: add version 2020.04 (#16332)
* hpcviewer: add version 2020.04

* ibm-java: add version 8.0.6.7
2020-04-27 16:04:02 -05:00
Brian Van Essen
a4b17b9503
cuDNN: Help dependents find libs/includes on Power arch (#16128)
On Power architectures cuDNN will install in a target directory. This
sets cuDNN_ROOT to point to the subdirectory to help dependents use
this install.
2020-04-27 13:15:46 -07:00
Amjad Kotobi
1c45153e00
ecflow added version 4.12.0 (#16327) 2020-04-27 13:19:41 -05:00
Amjad Kotobi
31eff3578f
cmake added version 3.17.1 (#16326) 2020-04-27 13:19:10 -05:00
Benjamin Tovar
505a511af4
update cctools to version 7.1.3 (#16324) 2020-04-27 13:18:44 -05:00
iarspider
a277b96b39
Make mariadb provide mysql-client... (#16322)
... as well as mariadb. Needed for ROOT.
2020-04-27 11:01:48 -05:00
vvolkl
77812845b8
update podio version formatting (#16321)
* update podio version formatting

* [podio] formatting fixes
2020-04-27 11:01:09 -05:00
vvolkl
eda886f627
[dd4hep] url and other fixes (#16320) 2020-04-27 11:00:10 -05:00
Toyohisa Kameyama
d59f7398a3
MODYLAS: New package (#16317) 2020-04-27 10:57:14 -05:00
darmac
5938499be7
Add new package: stinger (#16316) 2020-04-27 10:55:07 -05:00
darmac
81b5475f8e
Add new package: smartdenovo (#16310) 2020-04-27 09:55:35 -05:00
Massimiliano Culpo
fe46919e19
tulip: added new package at v5.4.0 (#16319)
closes #3479

Co-authored-by: Kate Isaacs <kisaacs@cs.arizona.edu>

Co-authored-by: Kate Isaacs <kisaacs@cs.arizona.edu>
2020-04-27 09:54:49 -05:00
George Hartzell
3f54e73025
singularity: better info re post-install step (#16311)
The singularity info should actually suggest where you might find the info about the post-install steps.

Co-authored-by: george.hartzell <george.hartzell@sana.com>
2020-04-27 13:41:04 +02:00
Toyohisa Kameyama
0477f829a2
xabclib: added package at v1.03 (#16271) 2020-04-27 13:33:28 +02:00
asmaahassan90
35717b556b
spglib: added libs property (#16318) 2020-04-27 13:26:10 +02:00
Christoph Junghans
3ea21fef4b
votca-csg: Block gromacs@2020 and newer (#16315) 2020-04-27 04:57:26 -06:00
Toyohisa Kameyama
ca4de491ba
ppOpen-APPL/AMR-FDM: New package (#16199)
* ppOpen-APPL/AMR-FDM: New package

* separate build and install.

* Fix description.
2020-04-26 22:09:06 -05:00
Axel Huebl
4f3cc19ec7
qt: fix macOS w/ AppleClang (mesa libs) (#16302)
Building the `py-jupyter` stack on macOS with AppleClang breaks on
the `py-qtconsole` -> `py-qtconsole` -> `qt +opengl` package build
environment setup with:
```
 ==> Error: AttributeError: Query of package 'mesa' for 'libs' failed
 ...
 ==> Error: Failed to install qt due to ChildError: AttributeError: Query of package 'mesa' for 'libs' failed
```

This tries to add more library targets build by `mesa` to avoid this.
2020-04-26 17:07:13 -07:00
Axel Huebl
199ce66a3c
libpciaccess: mirror (#16312)
Support mirrors for libpciaccess downloads.
2020-04-26 17:06:37 -07:00
Axel Huebl
af7e323f67
libbsd: mirror (#16313)
Add a mirror for `libbsd` to improve fetch stability.
libbsd.freedesktop.org sometimes failes in my nightly CI/CD scripts.
2020-04-26 17:06:27 -07:00
Axel Huebl
e8efeda14a
py-profilehooks (new package) (#16305)
Adds the py-profilehooks package.
2020-04-26 17:08:21 -05:00
Axel Huebl
f202023876
py-blosc (new package) (#16307)
Add the py-blosc python package.
2020-04-26 11:46:40 -05:00
Axel Huebl
31e8d646af
py-h5py: master (new version) (#16306)
Add the `master` branch of h5py as a version.
2020-04-26 11:45:04 -05:00
Adam J. Stewart
63a0647282
PyTorch: disable XNNPACK build (#16304) 2020-04-26 11:29:52 -05:00
Axel Huebl
75042c381c
LLVM lldb 10.0: Python Link Dependency (#16299)
* LLVM: Python Dependency

Effort to expose the linked python library when building LLVM.
This might fix the forward propagation of libintl that comes
with the static python library build on darwin.

* LLDB Py: Remove Ignored Old Flags

Changed in LLVM 10.0+
2020-04-25 21:36:08 -07:00
Adam J. Stewart
4cd537f6c7
py-pyyaml: add new version and variant (#16301) 2020-04-25 15:43:14 -05:00
Adam J. Stewart
b5be99cdb7
libyaml: add new version (#16300) 2020-04-25 15:42:40 -05:00
Sajid Ali
9b0e4cd20b
ucx : add version, modify variants (#16252)
* fixes

* remove extra newline
2020-04-25 12:39:33 -05:00
Adam J. Stewart
9bd0b0fbe1
py-spacy: add new package (#16293) 2020-04-25 10:35:57 -05:00
Jonathon Anderson
b796d2736c
Version bump: jdk 14 (#15821) 2020-04-25 10:35:33 -05:00
Adam J. Stewart
5fce2ac96b
py-thinc: add new package (#16295) 2020-04-24 23:50:56 -05:00
Joseph Ciurej
914f380bb6
Improved the accuracy of the dependencies for the 'visit' package. (#16297)
Added a fix for the 'visit' package when building variant '@3%gcc'.
2020-04-24 21:25:48 -05:00
Adam J. Stewart
b5bf816577
py-preshed: add new package (#16292) 2020-04-24 21:24:33 -05:00
Adam J. Stewart
d0ccab7d17
py-srsly: add new package (#16294) 2020-04-24 20:01:22 -05:00
Adam J. Stewart
dbd0fe8190
py-wasabi: add new package (#16296) 2020-04-24 20:01:09 -05:00
Adam J. Stewart
7a2f47d181
py-plac: add new package (#16291) 2020-04-24 20:00:55 -05:00
Adam J. Stewart
510d8821e5
py-nltk: add new package (#16290) 2020-04-24 20:00:42 -05:00
Adam J. Stewart
0ee023d29f
py-murmurhash: add new package (#16289) 2020-04-24 20:00:28 -05:00
Adam J. Stewart
ab87617d55
py-cymem: add new package (#16288) 2020-04-24 20:00:15 -05:00
Adam J. Stewart
3153610bb8
py-catalogue: add new package (#16287) 2020-04-24 20:00:02 -05:00
Adam J. Stewart
441c16bafb
py-blis: add new package (#16286) 2020-04-24 19:59:48 -05:00
Adam J. Stewart
89914f521e
py-wheel: add new version (#16285) 2020-04-24 19:59:30 -05:00
Adam J. Stewart
0606091775
py-tqdm: add new version (#16284) 2020-04-24 19:59:15 -05:00
Toyohisa Kameyama
051d0d935a
Chainer: New Package. (#16251)
* Chainer: New Package.

* 1. Add maintainers.
2. fix dependency.
3. Add typing-extention@3.6.6 and fix version dependency.

* afixed dependency.

* remove python dependency for version 6.
2020-04-24 11:56:10 -05:00
Adam J. Stewart
433a0b243f
oneDNN: add new version (#16267) 2020-04-23 19:50:22 -05:00
Jeffrey Salmond
9b3a0355bb
add fontconfig as vim dependency (#16268) 2020-04-23 19:50:05 -05:00
Christoph Junghans
a844467c25
eospac: prefer 6.4.0 (#16266) 2020-04-23 15:53:51 -06:00
Mark W. Krentel
686f0e21de
libunwind: add 1.4.0 release and 1.5 stable branch (#16261) 2020-04-23 12:34:19 -05:00
Andrew Gaspar
2a3942fa4c
Rust 1.43.0 (#16260) 2020-04-23 12:33:02 -05:00
Andrew W Elble
d5d232e207
tensorflow: compile against spack-provided protobuf (#16258)
This allows horovod to be built with frameworks=pytorch,tensorflow.

I tracked down the crash I observed in #15719, where loading torch
before tensorflow would cause a crash in:

google::protobuf::internal::(anonymous
namespace)::InitSCC_DFS(google::protobuf::internal::SCCInfoBase*)

The solution is to make tensorflow compile against the protobuf
version Spack provides, instead of allowing it to use it's own.
It's likely we'll want to go after some of the others
that are listed in third_party/systemlibs/syslibs_configure.bzl
in the future.
2020-04-23 11:14:09 -05:00
jthies
ca67df6e3d
phist: don't apply patch to 1.9.0 (#16257) 2020-04-23 11:11:54 -05:00
darmac
6cad7a585d
Go: support for aarch64 (#16083) 2020-04-23 11:01:20 -05:00
darmac
df2cfd26cd
ambari: added package at v2.7.5 (#16149) 2020-04-23 12:43:12 +02:00
Michael Kuhn
b1133cb5db
py-setuptools: added v44.1.0 and v46.1.3 (#16171) 2020-04-23 10:09:09 +02:00
Michael Kuhn
f07cdd7f7a
openssl: added 1.1.1g (#16247) 2020-04-23 10:01:23 +02:00
darmac
807a08a69b
enca: added package at v1.19 (#16255) 2020-04-23 09:59:32 +02:00
Joseph Ciurej
044985af80
cryptopp : added 'shared' variant and sse detection (#16213) 2020-04-23 09:38:10 +02:00
darmac
7c0aee4127
cpp-httplib: added package at v0.5.9 (#16228) 2020-04-23 09:35:14 +02:00
darmac
04457fe031
Py coilmq (#16203)
* Add new package: py-coilmq

* remove FIXME comment

* fix depends_on
2020-04-22 23:13:44 -05:00
darmac
fb1498abac
Add new package: dnsmasq (#16253) 2020-04-22 23:13:04 -05:00
darmac
15882d7868
Add new package: py-django (#16234) 2020-04-22 23:09:06 -05:00
darmac
7299de74c6
Add new package py-sqlparse (#16231)
* Update var/spack/repos/builtin/packages/py-sqlparse/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Add new package py-sqlparse

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-22 20:40:25 -05:00
Axel Huebl
d0bff870a6
macOS+GCC: Conflicts CMake, libuv, CPython (#16249)
The major building blocks in many software stacks:
- CPython
- CMake (libuv)

do not build on macOS with GCC. The main problem is that some macOS
framework includes pull in objective-c code and that code does get
misinterpreted as (invalid) C by GCC by default.
2020-04-22 19:41:33 -05:00
Vicente Adolfo Bolea Sanchez
4166c97a82
vtk-m: update Vtk-m pkg to its latest version v1.5.1 (#16192)
Last month VTK-m releases its lastest version named `v1.5.1`. This new
release only contains bugfixes related to compiler error / warnings.

- Depends on CMake >= 3.12
- Set VTKm_NO_ASSERT=ON by default
- add maintainers

Signed-off-by: Vicente Adolfo Bolea Sanchez <vicente.bolea@kitware.com>
2020-04-22 18:54:55 -05:00
Mark W. Krentel
ec54f86c0b
gotcha: add version 1.0.3 (#16239) 2020-04-22 16:48:41 -05:00
Kelly (KT) Thompson
650745746a
Provide new version 0.6.10. (#16240) 2020-04-22 16:34:58 -05:00
Greg Becker
ec23e4ffe5
update compiler config with bootstrapped compiler when already installed (#16221)
Update compiler config with bootstrapped compiler when it was already installed and added config defaults to code so mutable_config test fixture works.
2020-04-22 14:26:29 -07:00
Adam J. Stewart
46e90692e8
PyTorch: add conflict for Apple Clang 11.0.3 (#16238)
* PyTorch: add conflict for Apple Clang 11.0.3

* Flake8 fix
2020-04-22 15:47:14 -05:00
Tim Haines
0d2ebbf996
hwloc: Add netloc variant (#16001)
hwloc depends on MPI when netloc is enabled. Note that OpenMPI depends on
netloc, so hwloc cannot use OpenMPI as the MPI provider when netloc is
enabled (this would result in a cyclic dependency).
2020-04-22 13:34:32 -07:00
darmac
b874b3e1fe
Add new package: isc-dhcp (#16230) 2020-04-22 11:23:40 -05:00
darmac
169b9bebd8
Add new package: kea (#16232) 2020-04-22 11:17:30 -05:00
darmac
769f350802
Add new package: py-asgiref (#16233) 2020-04-22 11:16:49 -05:00
Rao Garimella
d77576d85d
update Jali version and dependent MSTK version (#16236)
Co-authored-by: Rao Garimella <rao@abyzou.lanl.gov>
2020-04-22 11:12:28 -05:00
Cameron Smith
e7906d6507
kokkos: generate_makefile calls cmake (#16237) 2020-04-22 11:11:55 -05:00
Sajid Ali
5f285fdd05
fix code-signing on macOS (#15592)
* rebase

* move if statement location

* remove whitespace

* spec to self.spec

* switch statements as per review

* fix erronous indent

* add missing cmake arg

* minor placement fix for cmake args

* edit comment

* fix erronous return

* clarify conflicts with messages

* remove duplicate comment

* simplify logic

* macos wasn't a variant, fix that

* remove extra blank line

* address reviewer comments on spaces
2020-04-22 09:49:07 -05:00
darmac
2a5592f419
Add new package: py-pid (#16202)
* Add new package: py-pid

* fix depends_on
2020-04-22 09:47:45 -05:00
asmaahassan90
d65b809f9b
Add new versions to Avizo (#16204)
* Add new versions

add versions 2019.3 and 2019.4 and adjust the install stage accordingly

* one small fix

* fix lint

* re-ordering the versions
2020-04-22 09:44:03 -05:00
Joseph Ciurej
0419f2c6df
Updated 'qt' to support '@5.12.7', '+debug', and '+opengl' with older OpenGL versions. (#16220) 2020-04-22 09:29:40 -05:00
Kelly (KT) Thompson
9c2819bdb3
libsm: added libuuid as dependency (#16226)
While building _visit_, I ran into an undefined symbol at link time. I tracked
the missing dependency to _libsm_ needing to know about _libuuid_ at link time.
2020-04-22 14:53:01 +02:00
darmac
be0aed9d8a
libcgroup: added package at v0.41 (#16229) 2020-04-22 13:19:01 +02:00
Jeffrey Salmond
b065150354
metis: fix build when version > 5.0 (#16186) 2020-04-22 12:18:38 +02:00
Elizabeth Fischer
0b753b9a77
py-pyproj: added v2.6.0 (#16176)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-04-22 11:50:36 +02:00
Servesh
3e9af610e7
source-highlight: fix detection of boost (#16102)
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-04-22 11:43:02 +02:00
darmac
ab35780fae
buddy: added package at v2.4 (#16166) 2020-04-22 10:55:07 +02:00
darmac
4c9c6b2a68
linux-pam: added package at v1.3.1 (#16137)
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-22 10:53:28 +02:00
darmac
1e243023d8
cmaq: added new package at v5.3.1 (#16224)
Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-22 08:56:13 +02:00
jthies
ac228050ab
Phist int64 variant (#16209)
* phist: add int64 variant and resulting conflicts and dependencies

* phist: use Trilinos TPLs as soon as they are in the spec, not just if +trilinos isexplicitly set
and remove a redundant depends-statement

* phist: use int as gotype for Trilinos dependency if ~int64

* phist: new version 1.9.0

* phist: remove trailing whitespace

* phist: updated checksum (version tag was moved)
2020-04-21 23:10:11 -05:00
darmac
1289d3589a
Add new package: cmockery (#16225) 2020-04-21 23:01:49 -05:00
Axel Huebl
2f7e940872
Fix: Flex Reconfigure (#16194)
* Fix: Flex Reconfigure

Learn the `flex` package how to reconfigure itself when needed.
Fix #11551

Co-authored-by: Andrew W Elble <aweits@rit.edu>

* Autoreconf: only when actually desired

Co-authored-by: Andrew W Elble <aweits@rit.edu>
2020-04-21 22:36:02 -05:00
Andrew Gaspar
667fee0703
catch2 2.12.1 (#16211) 2020-04-21 16:52:50 -07:00
Joseph Ciurej
272c47207d
Updated the 'opengl' package to include all older versions of the library. (#16219) 2020-04-21 16:20:45 -05:00
Adam J. Stewart
54ca52943d
PyTorch: add 1.5.0 (#16212) 2020-04-21 16:20:11 -05:00
Michael Kuhn
f3aceddbfb
py-tap-py: Add 3.0 and 2.6.2 (#16169) 2020-04-21 16:09:14 -05:00
Gregor Daiß
745804582b
Add new package: sgpp (#15961)
* sgpp: Added recipe

* sgpp: Removed maintainer and updated patch

* sgpp: Added more conflicts

* sgpp: Added conflicts for older combigrid versions

* sgpp: Added one more maintainer

* sgpp: Add version 3.3.0 and sane defaults

* sgpp: Better description and c++11 conflicts

* sgpp: Updated maintainers

* sgpp: Fix flake8 errors

* sgpp: Fix dependencies and minor issues

- Added py-setuptools dependency
- Fixed zlib link dependency
- Added git url
- Using spec.satisfies where appropriate

* sgpp: Added testing to package

* sgpp: Remove simd variant and use spec instead

* sgpp: Remove java variant

* sgpp: Small bugfixes

* sgpp: Add datadriven patch and patch explanations
2020-04-21 16:03:46 -05:00
Glenn Johnson
74c159b883
New package: sumo (#16096)
* New package: sumo

This PR adds the sumo package, as well as the fox package as a
dependency. It also updates and adds some fixes for openscenegraph.

For fox, the patch is for the development version. That patch should not
be necessary in future versions as it has been applied upstream. The
stable version is 1.6.57 and is marked as preferred. This is the version
needed for sumo.

Added dependencies for openscenegraph as well as set constraints on qt
versions.

* Update var/spack/repos/builtin/packages/sumo/package.py

I had intended to set this version constraint but somehow did not.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Add dependency types to sumo recipe

- googletest: 'test'
- swig: 'build'
- java: 'build', 'run'

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-21 13:27:34 -05:00
Adam J. Stewart
4f5bd044d6
py-torchvision: add new version (#16208) 2020-04-21 11:43:30 -05:00
Michael Kuhn
b9655636ce
gettext: Fix typo (#16206) 2020-04-21 08:48:48 -07:00
Andrew Gaspar
a41b9365a9
catch2: added v2.12 (#16207) 2020-04-21 17:15:59 +02:00
Michael Kuhn
cd5d477db9
qgis: Fix pkgconfig dependency (#16188) 2020-04-21 08:02:45 -05:00
Axel Huebl
6c8e15ee18
gettext: add missing iconv dependency (#16193)
`gettext` will pick up a random `iconv` dependency if not
specified, which crashes python and its own builds on macOS.
2020-04-20 21:47:04 -07:00
Christoph Junghans
ca86e56572
votca-*: remove rc versions (#16197) 2020-04-20 20:30:43 -06:00
darmac
e4805bb75f
Add new package: sse2neon (#16168) 2020-04-20 16:59:51 -05:00
Adam J. Stewart
45fee6edbd
Python: add latest Python 2 releases (#16191) 2020-04-20 16:57:08 -05:00
G-Ragghianti
5e69125e51
Implemented +shared and +static_tools variants (#16105) 2020-04-20 16:54:44 -05:00
Toyohisa Kameyama
c6ef9c2b87
Add ppOpen-APPL/FDM and ppOpen-APPL/FDM-AT. (#16116) 2020-04-20 16:36:36 -05:00
Toyohisa Kameyama
8e7f55e6d6
ppOpen-APPL/DEM-util: New package (#16120) 2020-04-20 16:29:06 -05:00
darmac
c2ca832883
Add new package: audacious (#16121) 2020-04-20 16:24:33 -05:00
darmac
e8a7e4f5ec
Add new package: bgpdump (#16122) 2020-04-20 16:23:47 -05:00
darmac
cf12541281
Add new package: byacc (#16123)
* Add new package: byacc

* refine byacc info
2020-04-20 16:22:37 -05:00
Amjad Kotobi
a70e76d043
Package Bonniepp adding sbin to PATH (#16124) 2020-04-20 16:19:55 -05:00
Michael Kuhn
8635c0d804
rocksdb: Add 6.7.3 (#16189)
This also adds a shared variant, so we can build both the static and
shared libraries at the same time. It also adds a pkg-config file.
2020-04-20 16:16:51 -05:00
Michael Kuhn
e3966d2791
pixman: Add 0.40.0 (#16190) 2020-04-20 16:16:39 -05:00
Amjad Kotobi
78f1940646
update package py-graphviz version (#16131) 2020-04-20 16:11:07 -05:00
Hadrien G
ac17d0783a
Add Acts v0.22 (#16141) 2020-04-20 16:08:44 -05:00