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6222 commits

Author SHA1 Message Date
Jon Rood
e18359bd82 Updating py-pillow with change in checksum for version 5.1.0. (#8547) 2018-06-22 18:02:27 -05:00
Yifan Zhu
8b0d29bec4 New package ncbi-magicblast (#8517) 
* ncbi-magicblast: new package

* updated package.py

* updated ncbi-magicblast
 2018-06-22 17:48:32 -05:00
Nick Forrington
259b1834f1 silo: Make silo use AutotoolsPackage (#8551) 
To benefit from updates to config.guess for newer architectures.

More info: https://github.com/spack/spack/issues/2063
 2018-06-22 17:19:03 -05:00
Gregory Lee
ae8645e27d added ReMPI version 1.1.0 (#8548) 2018-06-22 17:03:41 -05:00
Paul Chelarescu
3e7f5250c0 Added minuit package (#8536) 
* Added minuit package

* Removed default method and template

* Different URLs for old versions

* Patches for versions down to 1.5.0

* Reverted ROOT package changes

* Removed print statement

* Added checksums for older versions

* Consistent version names
 2018-06-22 11:27:25 -05:00
Massimiliano Culpo
d5e8cabe75 Fixed linking of R with MKL + configure issue in a dep (pixman) (#8449) 2018-06-22 08:03:47 -05:00
Denis Davydov
8e3d49cf35 elpa: add 2018.05.001.rc1 and 2017.11.001 (#8512) 
* elpa: add 2018.05.001.rc1 and 2017.11.001

* elpa: shift preferred
 2018-06-22 07:52:40 -05:00
Mike Pozulp
3c627ea655 new packages: workrave and its dependencies (#7753) 2018-06-21 18:25:26 -07:00
Todd Gamblin
8f2918813d Add tags for ECP applications that are in Spack. 
- All now have both 'ecp' and 'ecp-apps' tags.
- ECP ST projects will eventually also have ecp and ecp-software tags.
 2018-06-21 16:07:47 -07:00
Jon Rood
9f22bb61ac Correcting position independent code setting for boxlib and amrex. (#8537) 2018-06-21 16:37:10 -05:00
Cyrus Harrison
645c640f38 use new valgrind repo (#8538) 2018-06-21 16:35:07 -05:00
Matthias Diener
a14b1cac9e cmake: update package (#8539) 2018-06-21 15:34:33 -05:00
Daniel Topa
70a0ea910f openmpi: add latest release 3.0.2 (#8452) 
* Add latest release 3.0.2
https://www.open-mpi.org/software/ompi/v3.0/:x

Signed-off-by: Daniel Topa <dantopa@lanl.gov>

* Add in library version in comment
 2018-06-21 12:55:17 -05:00
Denis Davydov
e378d4ee34 dealii: add msg= to conflicts statements (#8509) 2018-06-21 18:24:05 +02:00
Peter Doak
5be89bfb7f poppler needs it test repo URL updated (#8519) 2018-06-20 16:04:22 -05:00
Chris Green
508bbf407b New package xxhash. (#8530) 
* New package xxhash.

* Change requested by @adamjstewart.
 2018-06-20 13:51:53 -05:00
Adam J. Stewart
b477868a5f
Add kealib 1.4.8 (#8522) 2018-06-20 13:51:33 -05:00
Axel Huebl
5b309ea6ac openPMD-api: update dependencies (#8528) 
update the dependencies of openPMD-api
 2018-06-20 11:24:41 -05:00
Michael Kuhn
e6834301b9 glib: Update to 2.56.1 (#8523) 2018-06-20 11:20:04 -05:00
Levi Baber
f9683419f9 mitofates: needs perl at runtime (#8526) 2018-06-20 11:17:14 -05:00
Chuck Atkins
5c731f54b8 Bump ZeroMQ from v4.2.2 to v4.2.5 (#8514) 
This addresses some build issues with GCC 8 and the addition of the
-Werror=stringop-truncation warning.
 2018-06-20 16:33:17 +02:00
Douglas Duckworth
818e7481a6 added albacore version 2.3.1 (#8513) 2018-06-19 11:16:41 -05:00
Jon Rood
3e2636e10f Percept requires googletest to be a static library. (#8506) 2018-06-18 16:34:39 -05:00
twang15
ec1b2d0a3a samrai: update package for 3.12.0 and fix compilation bugs for earlier versions (#8501) 
* SAMRAI: remove dependency on boost for samrai 3.12.0 or later versions, but keep the older versions ccontinuing working with boost 1.64.0 or earlier. Also, the older versions cannot compile with boost 1.65.0 or above. (#8491)

* SAMRAI: fix typos of comments and remove obsolete code.
 2018-06-18 13:52:24 -05:00
Glen Hansen
d98d45ec50 Albany: Add Albany package. (#8332) 
* Add package.py to support the Albany GitHub project builds.
 2018-06-18 13:50:26 -05:00
Jon Rood
ef002a25fa Updates to Nalu package(s) (#8492) 
* Updating Nalu now that it can build with shared libraries and adding the new Nalu-Wind wind energy focused application.

* Explicitly turn off TPLs for Nalu when not enabled.
 2018-06-18 12:04:11 -05:00
Samuel Fux
46bf21f05e Adding patch to Opencv (3.3.0-3.4.1) for fixing conflict between CUDA and OpenCV dnn header file (#8502) 
* Adding patch for OpenCV to fix a conflict between an OpenCV and a CUDA header file

* Added patch command to package.py file for OpenCV SPACK package.

* Adding version range for patch.

* shortening comment lines, since testsuite failed
 2018-06-18 09:53:48 -05:00
Pramod Kumbhar
98f11b9def Add new versions for TAU and PDT package (#8497) 2018-06-17 17:21:00 -05:00
Jim Galarowicz
ec66e0fb7e Add changes to the Krell packages with version updates and ranges for the latest release. (#8468) 
* Add changes to the Krell packages with version updates and ranges for the latest release.

* Add reviewer requested changes.  Remove preferred clauses and update the qt version for the cbtf-argonavis-gui@develop

* Trigger integration/test restart
 2018-06-17 09:49:27 -05:00
Jon Rood
129e03a2e0 Trilinos needs parallel-netcdf as an explicit dependency to avoid concretization errors when netcdf is an external. (#8493) 2018-06-16 14:11:07 -05:00
Satish Balay
fe0fd6ef34 superlu_dist: 'master' is branch - not tag (#8495) 
==> Trying to clone git repository: https://github.com/xiaoyeli/superlu_dist at tag master
Fetching tags only, you probably meant:
  git fetch --tags
 2018-06-16 08:18:01 -05:00
Jon Rood
4e4457f820 SAMRAI: new versions, handle deprecation of boost in latest version. (#8494) 2018-06-15 22:53:59 -07:00
Adam J. Stewart
cea5d04a1e
Fix GDAL Python bindings and add import tests (#8482) 2018-06-15 10:14:50 -05:00
Pramod Kumbhar
a3a9b2ab2b Add newer likwid versions 4.3.1 and 4.3.2 (#8488) 2018-06-15 10:14:00 -05:00
Matthias Maiterth
a85981b250 Package/geopm: Update to version 0.5.0 (#8487) 2018-06-15 08:17:17 -05:00
Veselin Dobrev
a3c989ef3a [mfem] Add BLAS+LAPACK to the required dependencies of SuperLU_DIST. (#8485) 2018-06-15 11:34:04 +02:00
Todd Gamblin
5f852634cd openssl: add new version 1.0.2o (#8486) 2018-06-15 09:54:52 +02:00
Dan FitzGerald
54aab585c4 Patch trilinos for xlf when using clang (#8391) 
* Add patching for xlf when %clang.  Changes are effective only when Fortran compiler is 'XL'.
* Use the right version for trilinos when patching for seacas.
 2018-06-14 20:48:43 -07:00
Dan FitzGerald
64d20a3955 Use no mangling for all spack compiler definitions that use the XL (#8392) 
Fortran compiler.
Clang can build with IBM XL Fortran compiler as well, so the name
mangling shoud be avoided for that case as well.
 2018-06-14 20:46:09 -07:00
Dan FitzGerald
a67b2e2942 Use the name of the Fortran compiler to determine what name mangling (#8393) 
setting to use, instead of the spack compiler.

%clang can use multiple Fortran compilers with different options, so
we need to know what compiler is used in order to provide the correct
options.
 2018-06-14 20:45:21 -07:00
健美猞猁
98d8bdebbe A new package: megahit. (#8471) 2018-06-14 13:45:12 -05:00
Matthias Wolf
75c0007cf8 neovim: add info for v0.3.0 (#8472) 2018-06-14 13:44:40 -05:00
Denis Davydov
53517c60b6 oce: add 0.18.3 (#8477) 2018-06-14 13:44:14 -05:00
Praveen C
34c08ed362 netgen should depend on zlib (#8473) 2018-06-14 13:43:43 -05:00
Denis Davydov
b5fcd62891 openblas: add 0.3.0 (#8478) 2018-06-14 13:43:05 -05:00
Denis Davydov
484e54d78e petsc: add 3.9.1 and 3.9.2 (#8479) 2018-06-14 13:42:12 -05:00
Denis Davydov
df657275e4 slepc: add 3.9.1 (#8480) 2018-06-14 13:41:52 -05:00
Denis Davydov
a878e76f93 superlu-dist: add 5.3.0 and 5.4.0 (#8481) 2018-06-14 13:41:35 -05:00
Serban Maerean
ee4050c58f boost package: patch dirent for pgi and boost 1.67 (#8313) 2018-06-13 15:53:14 -07:00
Satish Balay
eac8cf83bd xsdk: fix 'ChecksumError: md5 checksum failed' (#8440) 
[error came up with the  prior url pointing to a 'master' branch. so fixing with a switch to a fixed tarball]
 2018-06-13 13:46:38 -07:00