Commit graph

10872 commits

Author SHA1 Message Date
Amjad Kotobi
e1777c5708
New package bonniepp added (#16091) 2020-04-16 10:49:30 -05:00
Harmen Stoppels
7dcc8a5463
Add new version 1.1.1 (#16087) 2020-04-16 09:50:48 -05:00
Antonio Arena
fd3cdffb40
New matlab versions (#16086) 2020-04-16 09:50:14 -05:00
Axel Huebl
125fc2e611
MPark.Variant: GCC 7.3.1 Conflict (#16081)
* MPark.Variant: GCC 7.3.1 Conflict

Due to an ICE in this specific patch-release of GCC, compile
errors in downstream packages should be avoided with a clean
conflict.

* Fix superfluous spaces

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Fix typo

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-16 09:48:19 -05:00
Tiziano Müller
7c5fc6acea
dbcsr: expose all options, check openblas feats (#16034)
* dbcsr: expose all options, check openblas feats

* dbcsr: use Ninja to build, ensure serialized tests

* dbcsr: add myself as maintainer
2020-04-16 09:47:31 -05:00
asmaahassan90
7ac6f7fed9
Add Cubist (#16069)
* Add Cubist

* enhance recipe

* Not using OS module anymore

* remove white space

* Fix build shell

* make Flake8 happy

* use bash shell for build

* Convert it To MakefilePackage as per peer-review
2020-04-16 08:24:35 -05:00
ilbiondo
b0ec2788ab
HAL: added new package at v2.1 (#16085)
Co-authored-by: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-04-16 12:19:20 +02:00
darmac
04c6a781b6
Add new package: zookeeper-benchmark (#16067)
* Add new package: zookeeper-benchmark

* refine zookeeper version

* refine zookeeper version variant

* remove unused variant
2020-04-15 23:33:45 -05:00
darmac
f66bd41d9a
Neo4j (#16068)
* Update var/spack/repos/builtin/packages/neo4j/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Add new package: neo4j

* refine neo4j package

* fix flake8 warning

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-15 20:45:46 -05:00
Harsh Bhatia
29e2475a68
update: memsurfer with python3 (#15636)
* update: memsurfer with python3

* flake8 compliance

* Update var/spack/repos/builtin/packages/memsurfer/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/memsurfer/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/memsurfer/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* removed build_type preferences at adamjstewart's suggestion

* Added build/run dependency on python3.7

as suggested by adam stewart

* more flake8 horror!

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-15 20:11:48 -05:00
Rao Garimella
05afce85fa
Upgrade MSTK versions (#16079) 2020-04-15 18:13:47 -05:00
Carson Woods
a28c127043
netcdf-cxx4: bugfix (#16080)
* Add new variants

* Fix missing config_args variable
2020-04-15 18:05:42 -05:00
Axel Huebl
d9630b572a x.org packages: mirror mixin
overhaul all x.org packages to use available mirrors.
2020-04-15 14:44:13 -07:00
wspear
999c8e3a67
Added maintainers (#16078)
Co-authored-by: Wyatt Spear <wspear@cs.uoregon.edu>
2020-04-15 16:07:57 -05:00
ilbiondo
e41ac9af8a
Sonlib (#16060)
* sonLib package as required by the HAL toolkit

* cleanup

* Update var/spack/repos/builtin/packages/sonlib/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/sonlib/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-15 16:04:06 -05:00
Kelly (KT) Thompson
fef4e80a6d
New package: py-cmake-format (#16055)
* New package py-cmake-format

* wrap long lines

* Fix package description formatting.
2020-04-15 16:01:50 -05:00
Harmen Stoppels
f072d24c98
Bump version of libtree (#16051) 2020-04-15 15:57:21 -05:00
Axel Huebl
e1e804168a Tests: Mirror Mixin Classes 2020-04-15 11:44:14 -07:00
Axel Huebl
7e5257e44a x.org: mirror mixin
According to my nightly CI/CD tests, x.org is another large provider
of software in common build chains that is often down.

Added a hand-selected amount of mirrors that is well up-to-sync.
Tested with `util-macros` that has a quite "recent" patch release.

Other packages to follow in an individual PR.
2020-04-15 11:44:14 -07:00
Federico Ficarelli
94aa368af8
Fix grcp@1.27.0: (#16052)
Current default version was missing a dependency.
2020-04-15 11:32:08 -05:00
darmac
6eee7b6bb8
Add new package: mrbench (#16062) 2020-04-15 11:25:49 -05:00
darmac
c470a8da6a
Add new package: kinesis (#16063) 2020-04-15 11:25:21 -05:00
Robert Pavel
8935406756
Added Laghos v3 to Proxy Apps v3 (#16070)
Also fixed upper bound for v2 apps
2020-04-15 11:13:07 -05:00
Michael Kuhn
a157b479c8
julea: New package (#16071) 2020-04-15 11:12:28 -05:00
ilbiondo
4afdaa5f4b
IQ-TREE: added new package at v1.6.12 (#16064) 2020-04-15 16:37:25 +02:00
ilbiondo
666bc844be
Phylobayes MPI: added new package at v1.8b (#16065) 2020-04-15 13:26:37 +02:00
Massimiliano Culpo
ff0ec9cf61
openfoam: set run environment by sourcing bashrc (#15949) 2020-04-15 12:21:02 +02:00
ilbiondo
d41e366d0d
py-sonlib: added new package (#16058)
Co-Authored-By: Massimiliano Culpo <massimiliano.culpo@gmail.com>
2020-04-15 10:35:01 +02:00
Dan Lipsa
fd2e6ee50f
Apply same patch to version 10. (#15963) 2020-04-14 22:30:45 -05:00
Adam J. Stewart
69f7bae8fe
libssh2: fix linking on macOS (#16012)
* libssh2: fix linking on macOS

* Fix libgit2 linkage to libssh2
2020-04-14 17:10:45 -05:00
Tyler Reddy
cba5f71eee
MAINT: Charliecloud OSX error (#16049)
* MAINT: Charliecloud OSX error

* raise an appropriate error when attempting to build
Charliecloud on Mac OSX, since it will otherwise fail
with a more confusing configure stage link check failure

* Update var/spack/repos/builtin/packages/charliecloud/package.py

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* MAINT: PR 16049 revision

* remove an unused import

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-14 15:55:10 -06:00
Sajid Ali
9a18f8b1d7
fix typo (#16043) 2020-04-14 16:44:09 -05:00
Andrew W Elble
a031bc3166
new package: py-torch-nvidia-apex (#16050) 2020-04-14 16:43:30 -05:00
Carson Woods
993491c83c
Add new variants (#16047) 2020-04-14 16:01:57 -05:00
Adam J. Stewart
293e4e80f1
py-memory-profiler: add new version (#16048) 2020-04-14 14:54:28 -05:00
Tiziano Müller
f917f7149e
cp2k: add version 7.1 (#16037)
* cp2k: add version 7.1

* cp2k: add option to use COSMA for CP2K 8+
2020-04-14 13:33:49 -05:00
Carson Woods
8edd352c22
tau: remove deprecated variants (#16041)
* Add more tau variants

* Add more tau variants

* Remove deprecated packages

* Fix flake8 issue
2020-04-14 13:33:33 -05:00
Andrew Gaspar
98cdd8777a
Add support for pre-release builds of Rust (beta, master, nightly) (#16042) 2020-04-14 12:53:42 -05:00
Adam J. Stewart
94272cc7aa
py-tokenizers: add 0.5.2 (#16039) 2020-04-14 12:41:33 -05:00
Harmen Stoppels
f393355781
libtree: new package at 1.0.3 (#16036)
* Add new package libtree

* Fix linter issues
2020-04-14 11:39:52 -05:00
Tom Payerle
e10c134745
pfft: fix to handle 'precision' variant in fftw (#16029)
* pfft: fix to handle 'precision' variant in fftw

pfft had been checking for +double, etc. in fftw spec, which no longer
are present (replaced by Multivalued variant precision).

* pfft: fix to handle 'precision' variant in fftw

pfft had been checking for +double, etc. in fftw spec, which no
longer are present (replaced by Multivalued variant precision).

(amended to use more idiomatic checks as suggested by @alalazo)
2020-04-14 11:14:20 -05:00
Justin S
71fb29fccf
muscle: add 3.8.31 (#15974)
* muscle: add 3.8.31

* muscle: use build_directory property

* muscle: add url_for_version, fix version comparison
2020-04-14 11:13:16 -05:00
Axel Huebl
5acea35e82
sourceware.org: mirror urls (#15992)
sourceware.org is often quite overrun and times out or results in
certificate errors.

Since libffi, bzip2, elfutils, etc. are quite fundamental in
build chains, lets add some official mirrors.

libffi, bzip2, elfutils, lvm2, valgrind: add mirrors
2020-04-14 11:09:30 -05:00
Jordan Ogas
25e2548489
add charliecloud 0.15 (#16023) 2020-04-14 11:02:22 -05:00
Justin S
b131cc5ce0
py-vcf-kit: new package at 0.1.6 (#15976) 2020-04-14 15:51:52 +02:00
Antonio Arena
c6e257ae39
VMD: added new package at v1.9.3 (#16022) 2020-04-14 15:21:33 +02:00
darmac
5feed6bf6f
httpress: added new package at v1.1.0 (#15935) 2020-04-14 12:25:30 +02:00
Adam J. Stewart
723fd5a101
Rust: add missing dependencies (#16015)
* Rust: add missing dependencies

* 1.43.X won't support Python 3 either
2020-04-13 17:02:37 -05:00
Andrew W Elble
92edc68922
bazel: increase logging during build, set job limit (#16024)
To better help in troubleshooting build issues. Job limit might also
help with the memory limit issues we've been seeing.
2020-04-13 16:35:39 -05:00
Antonio Arena
0a6d9f4c55
Patch Mathematica (#16019)
* Patch Mathematica

Mathematica installer moves all files and directories from installation directory to a backup one. The problem is that it also moves .spack to this backup location. Once it's done it does not move .spack back where it was.

My patch creates a copy of .spack to /tmp then moves it back right before exiting the install call.

* Make lint happy

* Use Spack native copy()

As suggested in peer-review let's:
- Copy .spack to stage directory so I don't have to use random
- Use Spack native copy() to do these operations

* Use join_path to create paths

As per peer-review suggestion:
- Use join_path to create paths
- Use copy_tree since we're copying a directory that could have sub-directories
2020-04-13 13:22:29 -05:00