Commit graph

21870 commits

Author SHA1 Message Date
Manuela Kuhn
cd118341e9
py-nbclassic: add new packageg (#24778) 2021-07-09 14:21:56 +00:00
Gregor Daiß
2d1631c9fd
sgpp: add v3.4.0 (#24678) 2021-07-09 16:09:35 +02:00
Manuela Kuhn
cdd6c71f66
py-greenlet: add v1.1.0 (#24682) 2021-07-09 16:09:13 +02:00
figroc
7d334471d3
protobuf: add versions up to 3.17.3 (#24691) 2021-07-09 16:05:16 +02:00
Sebastian Schmitt
8cb3253a04
Update ppft (#24632) 2021-07-09 08:16:39 -05:00
Sebastian Schmitt
9add3182c7
Add py-salib (#24218) 2021-07-09 08:15:21 -05:00
Enrico Usai
f830585994
aws-parallelcluster: add v2.11.0 (#24648) 2021-07-09 08:13:57 -05:00
Vasileios Karakasis
2e80b60a04
Add ReFrame 3.6.3 (#24664) 2021-07-09 14:29:04 +02:00
Adam J. Stewart
ace28e2ef5
pinentry: add gui multi-valued variant (#24717) 2021-07-09 14:26:02 +02:00
Manuela Kuhn
4a44f023e8
py-jupyter-server: add new package (#24777) 2021-07-09 11:37:08 +00:00
Olivier Cessenat
1b26c47cb8
latex2html: adding the famous LaTeX to HTML converter (#24750) 2021-07-09 13:17:43 +02:00
Manuela Kuhn
aeab3b2872
py-jupyter-packaging: add new package (#24751) 2021-07-09 13:16:43 +02:00
Cameron Smith
727f43f69f
simmetrix-simmodsuite: add v16.0-210623 and maintainer (#24763) 2021-07-09 13:08:04 +02:00
Robert Mijakovic
ba2e186f31
llvm: add v12.0.1 (#24803)
Co-authored-by: Robert Mijakovic <robert.mijakovic@lxp.lu>
2021-07-09 13:06:04 +02:00
Michele Mesiti
de8d4e9d9a
sombrero: add v2021-07-08, deprecate v1.0 (#24782) 2021-07-09 13:02:26 +02:00
Manuela Kuhn
01ca429c9a
py-tornado: add v6.1 (#24753) 2021-07-09 12:57:45 +02:00
Manuela Kuhn
83d0e20ae8
py-requests-unixsocket: add new package (#24764) 2021-07-09 12:57:32 +02:00
Manuela Kuhn
85b49f115f
py-anyio: add new package (#24765) 2021-07-09 12:57:20 +02:00
holrock
451f484c9a
ruby: add v3.0.2 (#24771) 2021-07-09 12:53:37 +02:00
Manuela Kuhn
bbd80e5cf3
py-jupyter-core: add v4.7.1 (#24768) 2021-07-09 12:53:13 +02:00
Manuela Kuhn
d8f655159a
py-jinja2: add 3.0.1 and +i18n variant (#24767) 2021-07-09 12:52:59 +02:00
Adam J. Stewart
94e5c1d078
py-pyrsistent: need link dep on python (#24788) 2021-07-09 11:58:51 +02:00
Robert Cohn
0b9b3f6f79
intel-oneapi-dpl: new package (#24793) 2021-07-09 11:56:02 +02:00
Axel Huebl
5b5f99bbd4
WarpX: add v21.07 (#24800) 2021-07-09 11:53:04 +02:00
Todd Gamblin
eff7f20118
mypy: move configuration to pyproject.toml (#24802)
This moves our `mypy` configuration from `.mypy.ini` to `.pyproject.toml`
and increases the minimum `mypy` version in the tests.

- [x] move `mypy` configuration to `pyproject.toml`
- [x] remove `.mypy.ini`
- [x] ensure that `mypy` version .900 or higher is used in tests
2021-07-09 11:52:23 +02:00
Seth R. Johnson
3fb5c13983
googletest: add v1.11 and "live at head", keep v1.10 the default (#24290)
Ideally a test-only dependency won't be in the build, but until then
mark the requirement of gtest up to 1.10. 

See e4s job failure at https://gitlab.spack.io/spack/spack/-/jobs/349959 .

Looks like 1.11 introduces some breaking incompatibilities, so perhaps
we should transition later.
2021-07-09 10:57:37 +02:00
Stephen Herbein
57a9fb7610
flux: add latest tagged releases (#24687)
flux-core v0.21 requires jansson 2.10+

For more details, see:
a6086e021e
2021-07-09 10:55:06 +02:00
Nic McDonald
4c3005673e
abseil-cpp: add cxxstd variant (#24577) 2021-07-09 10:54:14 +02:00
Sebastian Schmitt
89b57929f2
Update pox (#24635)
* Update pox

* Add build and run
2021-07-08 21:42:26 -05:00
Todd Gamblin
24c01d57cf
imports: sort imports everywhere in Spack (#24695)
* fix remaining flake8 errors

* imports: sort imports everywhere in Spack

We enabled import order checking in #23947, but fixing things manually drives
people crazy. This used `spack style --fix --all` from #24071 to automatically
sort everything in Spack so PR submitters won't have to deal with it.

This should go in after #24071, as it assumes we're using `isort`, not
`flake8-import-order` to order things. `isort` seems to be more flexible and
allows `llnl` mports to be in their own group before `spack` ones, so this
seems like a good switch.
2021-07-08 22:12:30 +00:00
Paul Henning
620836a809
hdf5: Fix compiler identification for warning flags (#24627)
* Fix compiler test

Use `self.spec.satisfies` on compiler to determine if a flag should be
applied or not.  This approach avoids issues with the strings `gcc`
or `clang` appearing in the full path to the compiler executables, as
happens with spack-installed compilers (e.g. `nvhpc%gcc`).

* Limit compiler name search to last path component

@skosukhin pointed out that the cflag modification should happen for any
clang or gcc compiler, regardless of what compiler spec provides them.
This commit reverts to searching for a compiler name containing "gcc"
or "clang", but limits the search to the last path component, which
avoids matching spack-installed compilers built with gcc (e.g.
`nvhpc%gcc`), which will have "gcc" in the compiler path.

* Use `os.path` rather than `pathlib`

Co-authored-by: Paul Henning <phenning@lanl.gov>
2021-07-08 15:17:44 -04:00
Adam J. Stewart
0c5402ea5c
setup-env: allow users to skip slow parts (#24545) 2021-07-08 17:07:26 +02:00
Todd Gamblin
a22686279c cvs tests: don't use dateutil at all
`dateutil.parser` was an optional dependency for CVS tests. It was failing on macOS
beacuse the dateutil types were not being installed, and mypy was failing *even when the
CVS tests were skipped*. This seems like it was an oversight on macOS --
`types-dateutil-parser` was not installed there, though it was on Linux unit tests.

It takes 6 lines of YAML and some weird test-skipping logic to get `python-dateutil` and
`types-python-dateutil` installed in all the tests where we need them, but it only takes
4 lines of code to write the date parser we need for CVS, so I just did that instead.

Note that CVS date format can vary from system to system, but it seems like it's always
pretty similar for the parts we care about.

- [x] Replace dateutil.parser with a simpler date regex
- [x] Lose the dependency on `dateutil.parser`
2021-07-07 17:27:31 -07:00
Todd Gamblin
0dd04ffbfb style: get close to full coverage of spack style
Previous tests of `spack style` didn't really run the tools --
they just ensure that the commands worked enough to get coverage.

This adds several real tests and ensures that we hit the corner
cases in `spack style`.  This also tests sucess as well as failure
cases.
2021-07-07 17:27:31 -07:00
Todd Gamblin
24a4d81097 style: clean up and restructure spack style command
This consolidates code across tools in `spack style` so that each
`run_<tool>` function can be called indirecty through a dictionary
of handlers, and os that checks like finding the executable for the
tool can be shared across commands.

- [x] rework `spack style` to use decorators to register tools
- [x] define tool order in one place in `spack style`
- [x] fix python 2/3 issues to Get `isort` checks working
- [x] make isort error regex more robust across versions
- [x] remove unused output option
- [x] change vestigial `TRAVIS_BRANCH` to `GITHUB_BASE_REF`
- [x] update completion
2021-07-07 17:27:31 -07:00
Todd Gamblin
b5d2c30d26 style: Move isort configuration to pyproject.toml
- [x] Remove flake8-import-order checks, as we only need isort for this
- [x] Clean up configuration and requirements
2021-07-07 17:27:31 -07:00
Danny McClanahan
7a9fe189e1 style: add support for isort and --fix 2021-07-07 17:27:31 -07:00
Paul Kuberry
f5c1ae32d1
xyce: Prefer master branch (#24733)
Adds 7.3.0 release of Xyce and makes a tag
'github.master' pointing at the master branch
of the Xyce repository on github.com.
2021-07-07 19:56:57 -04:00
Manuela Kuhn
e0b901153b
New package: git-annex (#24721) 2021-07-07 11:54:40 -07:00
Glenn Johnson
4fd8640586
Configure docbook packages (#24300)
This PR configures the spack docbook packages
- docbook-xsl
- docbook-xml

The public entities are now mapped to the locally installed files of the
respective packages. The example catalogs are left in place and
XML_CATALOG_FILES points to the newly created catalogs.
2021-07-07 20:41:24 +02:00
Olivier Cessenat
970bf4318c
zziplib: add v0.13.72(#24462) 2021-07-07 20:33:54 +02:00
Gregory Lee
218ae0c5d1
m4 package: only apply nvhpc.patch for version 1.4.18 (#24730)
The patch as-is does not apply to 1.4.19
2021-07-07 11:28:42 -07:00
Adam J. Stewart
ad7984c5c0
magma package: fix bugs in cuda_arch variant (#24735) 2021-07-07 11:18:52 -07:00
Adam J. Stewart
b1f4f91f41
py-mypy: add version 0.910 (#24738) 2021-07-07 11:13:31 -07:00
Massimiliano Culpo
2914f9076e
perl: bzip2 and zlib may be installed under <prefix>/lib64 (#24752) 2021-07-07 11:22:51 -06:00
Adam J. Stewart
663c37cac4
py-torch: +magma requires +cuda (#24736) 2021-07-07 19:12:52 +02:00
eugeneswalker
36ba640cbd
add e4s-on-power stack (#24734) 2021-07-07 10:06:30 -06:00
Manuela Kuhn
5e33b20230
py-seaborn: add 0.11.1 (#24748) 2021-07-07 10:49:59 -05:00
Jordan Ogas
d3c04ed345
charliecloud: add v0.24 (#24728) 2021-07-07 16:42:41 +02:00
Manuela Kuhn
20a191ad93
py-neurokit2: add new package (#24749) 2021-07-07 16:37:34 +02:00