Commit graph

35895 commits

Author SHA1 Message Date
Adam J. Stewart
26bb15e1fb
py-sphinx: add v7.3 (#43703) 2024-04-17 18:51:31 +02:00
Bill Williams
1bf92c7881
[Score-P] Make local with-or-without not use "yes" (#43701)
Score-P does not accept "--with-foo=yes", but only "--with-foo" or "--with-foo=some-valid-specific-choice-or-path". This keeps Spack from generating config flags that will cause Score-P to barf.
2024-04-17 09:32:47 -07:00
Todd Gamblin
eefe0b2eec
Improve spack find output in environments (#42334)
This adds some improvements to `spack find` output when in environments based
around some thoughts about what users want to know when they're in an env.

If you're working in an enviroment, you mostly care about:
* What are the roots
* Which ones are installed / not installed
* What's been added that still needs to be concretized

So, this PR adds a couple tweaks to display that information more clearly:

- [x] We now display install status next to every root. You can easily see
      which are installed and which aren't.

- [x] When you run `spack find -l` in an env, the roots now show their concrete
      hash (if they've been concretized). They previously would show `-------`
      (b/c the root spec itself is abstract), but showing the concretized root's
      hash is a lot more useful.

- [x] Newly added/unconcretized specs still show `-------`, which now makes more
      sense, b/c they are not concretized.

- [x] There is a new option, `-r` / `--only-roots` to *only* show env roots if
      you don't want to look at all the installed specs.

- [x] Roots in the installed spec list are now highlighted as bold. This is
      actually an old feature from the first env implementation , but various
      refactors had disabled it inadvertently.
2024-04-17 16:22:05 +00:00
Wouter Deconinck
de6c6f0cd9
py-pyparsing: new version 3.1.2 (#43579) 2024-04-17 07:53:03 -06:00
James Smillie
309d3aa1ec
Python package: fix install of static libs on Windows (#43564) 2024-04-16 16:40:15 -06:00
Andrey Perestoronin
feff11f914
intel-oneapi-dnn-2024.1.0: add DNN package version (#43679)
* add onednn package

* fix style

* Update var/spack/repos/builtin/packages/intel-oneapi-dnn/package.py

Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>

---------

Co-authored-by: Robert Cohn <rscohn2@gmail.com>
Co-authored-by: Tamara Dahlgren <35777542+tldahlgren@users.noreply.github.com>
2024-04-16 15:26:14 -04:00
John W. Parent
de3b324983
Windows filesystem utilities (bugfix): improve SFN usage (#43645)
Reduce incidence of spurious errors by:
* Ensuring we're passing the buffer by reference
* Get the correct short string size from Windows API instead of computing ourselves
* Ensure sufficient space for null terminator character

Add test for `windows_sfn`
2024-04-16 11:02:02 -07:00
kwryankrattiger
747cd374df
Run after_script aggregator with spack python (#43669) 2024-04-16 19:03:44 +02:00
Wouter Deconinck
8b3ac40436
acts: new version 34.0.0 (#43680) 2024-04-16 11:03:31 -06:00
Wouter Deconinck
28e9be443c
(py-)onnx: new version 1.16.0 (#43675) 2024-04-16 09:58:43 -07:00
John W. Parent
1381bede80
zstd: 1.5.6 does not build on Windows (#43677)
Conflict until a fix has been merged upstream
2024-04-16 09:36:27 -07:00
Wouter Deconinck
6502785908
podio: +rntuple requires root +root7 (#43672) 2024-04-16 09:27:07 -07:00
Erik Heeren
53257408a3
py-bluepyopt: 1.14.11 (#43678) 2024-04-16 09:21:24 -07:00
Wouter Deconinck
28d02dff60
pythia8: new version 8.311 (#43667) 2024-04-16 09:19:06 -07:00
Wouter Deconinck
9d60b42a97
jwt-cpp: new version 0.7.0, scitokens-cpp: new versions to 1.1.1 (#43657)
* jwt-cpp: new version 0.7.0, depends_on nlohmann-json
* scitokens-cpp: new versions to 1.1.1
* scitokens-cpp: conflicts ^jwt-cpp@0.7: when @:1.1
2024-04-16 09:17:18 -07:00
Harmen Stoppels
9ff5a30574
concretize.lp: fix issue with reuse of conditional variants (#43676)
Currently if you request pkg +example where example is a conditional
variant, and you have a pkg in the database for which the condition
did not hold (so no +example nor ~example), the solver would reuse it
regardless, not imposing +example.

The change rules out exactly one thing: variant_set without variant_value,
which in practice could only happen when not node_has_variant (i.e. when
under the current package.py rules the variant's when condition did not
trigger).
2024-04-16 16:09:32 +00:00
Wouter Deconinck
9a6c013365
wayland: +doc requires graphviz +expat for HTML tables (#43668) 2024-04-16 01:28:47 -06:00
Andrey Prokopenko
9f62a3e819
arborx: add v1.6 (#43623) 2024-04-16 09:27:14 +02:00
Maciej Wójcik
e380e9a0ab
gromacs: prevent version conflict after enabling plumed (#43449) 2024-04-16 09:07:50 +02:00
Adam J. Stewart
8415ea9ada
py-black: switch maintainer (#43652) 2024-04-16 08:51:12 +02:00
Josh Bowden
6960766e0c
Damaris: add v1.10.0 (#43664)
Co-authored-by: Joshua Bowden <joshua-chales.bowden@inria.fr>
2024-04-15 23:43:39 -06:00
Michael Kuhn
0c2ca8c841
octave: add 8.4.0 and 9.1.0 (#43518) 2024-04-15 13:32:20 -07:00
Jen Herting
273960fdbb
[py-pybedtools] added version 0.10.0 (#43625) 2024-04-15 13:27:22 -07:00
eugeneswalker
0cd2a1102c
crtm: add noaa versions and package mods (#43635)
* crtm: add noaa versions and package mods
* crtm@v2.4.1-jedi: add missing depends_on netcdf-fortran, ecbuild from jcsda spack fork
2024-04-15 13:24:07 -07:00
Teague Sterling
e40676e901
Add ollama package (#43655)
* Added package to build Ollama
* Update package.py
  Add license and documentation
* [@spackbot] updating style on behalf of teaguesterling
2024-04-15 13:13:07 -07:00
Tristan Carel
4ddb07e94f
py-morphio: add version 3.3.7, update license (#43420) 2024-04-15 14:06:48 -06:00
eugeneswalker
50585d55c5
hdf: %oneapi: -Wno-error=implicit-function-declaration (#43631)
* hdf: %oneapi: -Wno-error=implicit-function-declaration

* [@spackbot] updating style on behalf of eugeneswalker
2024-04-15 12:17:07 -07:00
Adam J. Stewart
5d6b5f3f6f
GDAL: fix MDB build (#43665) 2024-04-15 10:38:56 -07:00
Juan Miguel Carceller
2351c19489
glew: remove a few unused options (#43399)
Co-authored-by: jmcarcell <jmcarcell@users.noreply.github.com>
2024-04-15 18:49:51 +02:00
snehring
08d49361f0
iq-tree: add v2.3.1 (#43442) 2024-04-15 18:48:58 +02:00
Ken Raffenetti
c3c63e5ca4
mpich: Update PMI configure options (#43551)
Add a "default" option that passes no option to configure. Existing
options changed in the MPICH 4.2.0 release, so update the package to
reflect those changes.
2024-04-15 18:40:37 +02:00
Richard Berger
e72d4075bd
LAMMPS: add v20240207.1 (#43538)
Add workaround for undefined HIP_PATH in older versions
2024-04-15 16:34:30 +00:00
Todd Gamblin
f9f97bf22b
tests: Spec tests shouldn't fetch remote git repositories. (#43656)
Currently, some of the tests in `spec_format` and `spec_semantics` fetch
the actual zlib repository when run, because they call `str()` on specs
like `zlib@foo/bar`, which at least currently requires a remote git clone
to resolve.

This doesn't change the behavior of git versions, but it uses our mock git
repo infrastructure and clones the `git-test` package instead of the *real*
URL from the mock `zlib` package.

This should speed up tests.  We could probably refactor more so that the git
tests *all* use such a fixture, but the `checks` field that unfortunately
tightly couples the mock git repository and the `git_fetch` tests complicates
this. We could also consider *not* making `str()` resolve git versions, but
I did not dig into that here.

- [x] add a mock_git_test_package fixture that sets up a mock git repo *and*
      monkeypatches the `git-test` package (like our git test packages do)
- [x] use fixture in `test_spec_format_path`
- [x] use fixture in `test_spec_format_path_posix`
- [x] use fixture in `test_spec_format_path_windows`
- [x] use fixture in `test_parse_single_spec`
2024-04-15 09:20:23 -07:00
Massimiliano Culpo
8033455d5f
hdf5: require mpich+fortran when hdf5+fortran (#43591) 2024-04-15 18:17:28 +02:00
Eric Berquist
50a5a6fea4
tree-sitter: add versions up to 0.22.2 (#43608) 2024-04-15 09:10:19 -07:00
eugeneswalker
0de8a0e3f3
wgrib2: oneapi -> comp_sys="intel_linux" (#43632) 2024-04-15 18:04:41 +02:00
SXS Bot
0a26e74cc8
spectre: add v2024.04.12 (#43641)
Co-authored-by: sxs-bot <sxs-bot@users.noreply.github.com>
2024-04-15 18:03:51 +02:00
dependabot[bot]
9dfd91efbb
build(deps): bump docker/setup-buildx-action from 3.2.0 to 3.3.0 (#43542)
Bumps [docker/setup-buildx-action](https://github.com/docker/setup-buildx-action) from 3.2.0 to 3.3.0.
- [Release notes](https://github.com/docker/setup-buildx-action/releases)
- [Commits](2b51285047...d70bba72b1)

---
updated-dependencies:
- dependency-name: docker/setup-buildx-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-04-15 18:00:47 +02:00
dependabot[bot]
1a7baadbff
build(deps): bump python-levenshtein in /lib/spack/docs (#43543)
Bumps [python-levenshtein](https://github.com/rapidfuzz/python-Levenshtein) from 0.25.0 to 0.25.1.
- [Release notes](https://github.com/rapidfuzz/python-Levenshtein/releases)
- [Changelog](https://github.com/rapidfuzz/python-Levenshtein/blob/main/HISTORY.md)
- [Commits](https://github.com/rapidfuzz/python-Levenshtein/compare/v0.25.0...v0.25.1)

---
updated-dependencies:
- dependency-name: python-levenshtein
  dependency-type: direct:production
  update-type: version-update:semver-patch
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-04-15 18:00:24 +02:00
Marc Perache
afcfd56ae5
range-v3: add v0.12.0 (#40103) 2024-04-15 17:43:14 +02:00
dependabot[bot]
7eb2e704b6
build(deps): bump codecov/codecov-action from 4.1.1 to 4.3.0 (#43562)
Bumps [codecov/codecov-action](https://github.com/codecov/codecov-action) from 4.1.1 to 4.3.0.
- [Release notes](https://github.com/codecov/codecov-action/releases)
- [Changelog](https://github.com/codecov/codecov-action/blob/main/CHANGELOG.md)
- [Commits](c16abc29c9...84508663e9)

---
updated-dependencies:
- dependency-name: codecov/codecov-action
  dependency-type: direct:production
  update-type: version-update:semver-minor
...

Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2024-04-15 17:34:31 +02:00
Josh Milthorpe
564b4fa263
hipcub: depend on matching version of hip+cuda when +cuda (#42970) 2024-04-15 17:33:26 +02:00
Adam J. Stewart
0a941b43ca
PyTorch: build with external cpuinfo (#40758) 2024-04-15 17:26:52 +02:00
one
35ff24ddea
googletest: fix reversed pthreads variant logic (#43649) 2024-04-15 11:18:27 -04:00
Rocco Meli
7019e4e3cb
openbabel: add CMake patch for 3.1.1 (#43612) 2024-04-15 17:07:54 +02:00
Weston Ortiz
cb16b8a047
goma: new version 7.6.1 (#43617) 2024-04-15 17:04:34 +02:00
Adam J. Stewart
381acb3726
Build systems: fix docstrings (#43618) 2024-04-15 17:01:52 +02:00
Adam J. Stewart
d87ea0b256
py-maturin: add v1.5.1 (#43619) 2024-04-15 16:55:17 +02:00
Adam J. Stewart
1a757e7f70
py-lightning: add v2.2.2 (#43621) 2024-04-15 16:54:34 +02:00
eugeneswalker
704e2c53a8
py-eccodes: add v1.4.2 (#43633) 2024-04-15 16:44:57 +02:00