Commit graph

646 commits

Author SHA1 Message Date
Peter Scheibel
cc0ee3dc29 The HTML number conversion regex operating against a byte string will only
convert individual bytes, so therefore incorrectly converts utf-8 encoded
characters. Decoding byte strings to unicode objects results in correct HTML
number encodings.
2015-10-23 20:56:06 -07:00
Peter Scheibel
d76c923623 1. Rename CommandError -> InstallError
2. InstallError now subclasses SpackError vs. StandardError (so it is now
handled by the spack shell script)
2015-10-23 16:18:06 -07:00
Peter Scheibel
ea872f8098 1. Added CommandError exception to build_environment
2. The parent of a failed child process in build_environment.fork no longer
calls sys.exit - instead it raises a CommandError (from [1])
3. test-install command now attempts to install all packages even if one fails
2015-10-22 17:44:16 -07:00
Peter Scheibel
246423b4b4 Generate test results (designated as skipped) for parents of failed dependencies 2015-10-22 16:00:03 -07:00
Todd Gamblin
b6833f08df Merge pull request #129 from mathstuf/separate-prefix
spack: split spack_root from prefix
2015-10-21 16:04:36 -04:00
Todd Gamblin
3c788147ca Add Spack logo. 2015-10-18 19:14:40 -07:00
Todd Gamblin
7598612b86 Better info variant output. 2015-10-17 17:34:39 -07:00
Peter Scheibel
39f0f000f8 Created unit test for core logic in test-install command. 2015-10-15 22:02:14 -07:00
Peter Scheibel
6cd976d036 Better description for test-install command 2015-10-15 20:13:08 -07:00
Peter Scheibel
49b91235bb Minor edit for clarity (generate output for single top level spec vs. iterating
through collection of size 1)
2015-10-15 19:59:57 -07:00
Peter Scheibel
82ed1bc343 Originally I enforced specifying 1 top-level package with the test-install
command by having it consume exactly 1 positional argument (i.e. by removing
"nargs=argparse.REMAINDER") but this does not work when configuring dependencies
of a top-level package (which show up as additional positional args). Instead
now there is an explicit check to ensure there is only 1 top-level package.
2015-10-15 19:38:47 -07:00
Peter Scheibel
e451421db3 1. Specifying the output file path for test-install is now an option (vs. an
argument). The default path is [package id].xml in the CWD where test-install
is called from.

2. Fixed a bug with package.build_log_path (which was added in this branch).

3. keep_stage for package.do_install is now set. This allows uninstalling and
reinstalling packages without (re) downloading them.
2015-10-15 19:22:36 -07:00
Peter Scheibel
4997f0fe57 Move logic for tracking the build log into package.py (since that is what is
managing the build log) and expose as package.build_log_path.
2015-10-15 12:44:02 -07:00
Peter Scheibel
c985ad7644 Update test failure output: don't include the entire build log, just lines which
mention errors (or if no such lines can be found, output the last 10 lines from
the log).
2015-10-15 12:23:56 -07:00
Peter Scheibel
b9bf0b942c Use spec.traverse vs. recursive function.
Also even though I calculated which installs are new (e.g. vs. packages that
have already been installed by a previous command) I forgot to make use of that
in create_test_output (so I was always generating test output even if a package
had been installed before running the test-install command).

Note to avoid confusion: the 'handled' variable (removed in this commit) did not
serve the same purpose as 'newInstalls': it was originally required because the
recursive approach would visit the same dependency twice if more than one
package depended on it.
2015-10-15 11:52:08 -07:00
Peter Scheibel
f2b4341ad6 Always run with verbose output (so eliminate it as an option). Also remove other
commented options.
2015-10-15 10:45:03 -07:00
Peter Scheibel
11861fb8d7 Changing name of file requires changing function name to be invoked as a command 2015-10-15 10:35:42 -07:00
Peter Scheibel
e3d703b80f Change name of file to conform to conventions. 2015-10-15 10:33:39 -07:00
Peter Scheibel
2ae7839b66 Edit function names to conform to naming conventions. 2015-10-15 10:26:13 -07:00
Peter Scheibel
0d66362cee Only install 1 top-level package with testinstall. Otherwise if multiple
packages are specified and a prior one fails, it will prevent any of the others
from succeeding (and generating test output) even if they don't share
dependencies.
2015-10-15 10:17:08 -07:00
Ben Boeckel
3ce85b2270 spack: split spack_root from prefix
A foundation for allowing runtime configuring of the prefix.
2015-10-15 09:27:05 -04:00
Peter Scheibel
71dcf8833c Make sure to generate output for dependencies as if they were separate tests:
the original intent was to generate output as if each package was a unit test,
but I noticed that I was only generating test output for top-level packages.
2015-10-13 19:02:41 -07:00
Peter Scheibel
1ce6d8b627 Add spec YAML format to test output. 2015-10-13 10:41:47 -07:00
Todd Gamblin
d16095c856 Add forgotten file from previous commit. 2015-10-13 10:35:19 -07:00
Peter Scheibel
9f56d9c807 Don't create test output for any package that was already installed. 2015-10-12 20:56:03 -07:00
Peter Scheibel
6cd22e5786 1. Added Junit XML format
2. Specify output to a file vs. a directory
3. Use [1] and [2] to write an XML file tracking success of package installs in
Junit XML format
2015-10-12 20:49:23 -07:00
Peter Scheibel
b7249d66b3 Adding command testinstall. See "spack testinstall -h" for documentation.
Still need to add output formatting (in a commonly parse-able format like Junit
or TAP). May want to adjust how the build log is accessed in case of a build
failure.
2015-10-12 19:18:31 -07:00
Todd Gamblin
2c81875019 Fix bug in colify color handling. 2015-10-12 14:44:41 -07:00
Gregory Becker
5fda7daf57 an ordered database test 2015-09-27 17:54:24 -07:00
Todd Gamblin
8818f4ac5e Remove enabled variants from install prefix.
- these make the prefix too long in many cases.
- users can figure out which install is which by querying.
2015-09-27 17:01:35 -07:00
Todd Gamblin
adbd393c39 Remove special characters (@, %, +, ~, etc) from stage name 2015-09-27 17:01:35 -07:00
Todd Gamblin
d0e22b2240 Add ref counting to database. This does not handle removal properly yet. 2015-09-18 11:40:05 -07:00
Todd Gamblin
fb73979345 Allow custom timeout for database locking. 2015-09-17 16:09:59 -07:00
Todd Gamblin
e17ad6a684 Simplify lock context managers. 2015-09-17 01:05:19 -07:00
Todd Gamblin
ccf311c9c6 Several changes to DB implementation.
1. Database stores a file version, so we can add to it in the future.
2. Database indexed by hashes and not numerical indexes.
3. Specs built by database have consistent hashes and it's checked.
4. minor naming and whitespace changes.
2015-09-17 00:16:12 -07:00
Gregory Becker
cd23d2eaa2 Added spack fsck and re-read from glob if the database file does not exist. Allows older versions to smoothly upgrade to the database. 2015-09-15 14:20:19 -07:00
Gregory Becker
9c8e46dc22 Added conservative locking to the spack commands that access the database at _index 2015-09-03 09:21:19 -07:00
Gregory Becker
c3246ee8ba Removed incorrect stage removal code from cleanup() in do_install() 2015-08-31 09:46:55 -07:00
Gregory Becker
f406fcb843 Fixed several issues from code review
Most importantly wrote the Lock, Read_Lock_Instance, and Write_Lock_Instance classes in lock.py
Updated the locking in database.py
TODO: Lock on larger areas
2015-08-31 09:38:38 -07:00
Todd Gamblin
c5c9ada7b0 Fix for GitHub #95
develop: compiler clang@unknown created for /usr/bin/clang-format
https://github.com/scalability-llnl/spack/issues/95
2015-08-27 02:04:58 -07:00
Gregory Becker
9345e78779 Fixed inaccurate comment in spec.py 2015-08-25 16:31:09 -07:00
Gregory Becker
ce8df65d7b Eliminated unnecessary differences in pull request 2015-08-25 16:28:55 -07:00
Gregory Becker
e32c59f805 Fixed file locking. Fix is slightly ugly (lock integer added) but it gets the job done
It avoids having to spin simply on the OSError.
2015-08-25 15:32:45 -07:00
Gregory Becker
4a2bd1753a Added dependency indices to database, ensuring correctly reconstructed specs from database
Began work on file locking, currently commented out.
2015-08-25 15:11:18 -07:00
Gregory Becker
fb1874165b Eliminated all calls that relied on finding all packages in the opt directory
Replaced them all with references to the database

Implemented caching in the database. The database now only re-reads data
if the database file exists and was changed since this file last wrote to it.

Added the installed_db field to the spack instance

Left the call to all_specs from testdirectory_layout.py for now.
2015-08-21 17:00:39 -07:00
Gregory Becker
55f68bb2b0 Added hashes to the database 2015-08-21 13:04:27 -07:00
Gregory Becker
1da56e5290 Added a database of installed packages.
No methods use the database so far.

Also, a bug fix:
      Previous version did not remove the staging directory on a failed install
      This led to spack refusing to uninstall dependencies of the failed install
      Added to cleanup() to blow away the staging directory on failed install.
2015-08-21 11:32:12 -07:00
Todd Gamblin
6f75f5bd6a Merge pull request #88 from trws/git_depth_attempt
adding a fallback on failure with git --depth
2015-08-12 23:59:13 -07:00
Todd Gamblin
1792115b4d Use absolute paths to spack compiler wrappers in CC/CXX/F77/FC 2015-08-04 09:57:06 -07:00
Tom Scogland
9174c06598 adding a fallback on failure with git --depth
Certain remote protocols don't support the `--depth` option.  Since this can't
be checked by URL type or in any sane way locally, this version attempts to
clone git repositories with the --depth option, and if that fails attempts the
clone again without it.
2015-07-27 14:03:04 -07:00
Todd Gamblin
27ca697b43 Add Python version test to detect {} in version strings.
- {} is not compatible with Python 2.6
2015-07-24 14:22:28 -07:00
Todd Gamblin
1e2f421faa Fix Python 2.6 compatibility issue. 2015-07-23 17:01:55 -07:00
Todd Gamblin
19123b4c48 Fix ProviderIndex.update(), which didn't remove stale providers. 2015-07-16 01:41:11 -07:00
Todd Gamblin
e097696390 Update concretize to check for more changes and iterate further. 2015-07-16 01:12:11 -07:00
Todd Gamblin
9087f26537 Fix mangled error message. 2015-07-14 23:59:03 -07:00
Todd Gamblin
0d308ca30f Fix regression of install -j. 2015-07-14 23:45:58 -07:00
Todd Gamblin
9d1f8f6bfd Add test to check packages for Python2.6 compatibility, as well as core. 2015-07-13 18:37:48 +00:00
Florent Pruvost
5acd7cad9a add env. var. in modules: LIBRARY_PATH and PKG_CONFIG_PATH 2015-07-02 02:12:10 -07:00
Todd Gamblin
6892d7189f Merge branch 'features/toggle-build-output' into develop 2015-07-02 00:51:03 -07:00
Todd Gamblin
b3e34be972 Better python template for 'spack create' 2015-07-02 00:39:33 -07:00
Todd Gamblin
edfcac32c3 Fix bug in uninstall (regression in 0fc3b58) 2015-06-20 21:46:52 -07:00
Todd Gamblin
6ed5dd7427 log_output now allows echo to be toggled wtih 'v' key 2015-06-20 20:20:28 -07:00
Todd Gamblin
cfb883646f Fix for git pull --tags when using git 1.7.1
- Added `ignore_errors` option to `Executable.__call__`
- Can avoid raising errors on *specific* error return values.
2015-06-13 17:52:00 -07:00
Tom Scogland
0b5ca25358 Fix for repos with many tags
Ensures all tags are ready before checkout, using `--branch` if possible and
an extra pull if that is not available.  Also adds `--depth 1` to create
shallow clones if the git version is sufficient.

Fixes #64.
2015-06-13 15:29:55 -07:00
Tom Scogland
277df08676 removing vestigial lines from a previous commit 2015-06-13 14:10:45 -07:00
Tom Scogland
d92ac2a6b2 Small ruby enhancement and tmuxinator package
It is currently less painful to pull the source from github, compile it into a
gem, then install the gem, than it is to download a gem and install it.  This
still lacks an activation mechanism, but `spack use tmuxinator` is functional.
2015-06-11 13:51:53 -07:00
Todd Gamblin
0a92349f90 Try a little harder in concretize_version() -- concretize unsafe versions too.
- This can result in the user being prompted to download an unsafe
  version.

- Avoids overly strict errors when something *could* be satisfiable
  but we don't know about hte version.
2015-06-07 15:40:01 -07:00
Todd Gamblin
3f3ceb24c4 Add some comments b/c I didn't understand my own test. 2015-06-07 15:39:40 -07:00
Todd Gamblin
0fc3b58890 SPACK-38: Allow specs to be indexed by virtual dependencies.
- The following now work differently:

      spec['mpi']
      spec['blas']

  This can return a spec for openmpi, mpich, mvapich, etc., EVEN if
  the spec is already concretized.  This means that in a package that
  `depends_on('mpi')`, you can do `spec['mpi']` to see what it was
  concretized to.  This should simplify MPI and BLAS packages.

      'mpi' in spec
      'blas' in spec

  Previously, if the spec had been concretized, these would be `False`
  because there was not a dependency in the DAG with either of these
  names. These will now be `True` even if the spec has been
  concretized.  So, e.g., this will print "YES"

      s = Spec('callpath ^mpich')
      if 'mpi' in spec:
          print "YES"

- Similarly, this will be True:

      Spec('mpich').satisfies('mpi')

- Because of the way virtual dependencies are currently implemented,
  the above required some fiddling around with `package.py` so that it
  would never call `Spec.__contains__` (and result in endless
  recursion).

- This should be fixed by allowing virutal dependnecies to have their
  own package class.
  - This would allow a quicker check for vdeps, without a call to
    `all_packages`.
  - For the time being, `package.py` shouldn't call `__contains__`
2015-06-07 15:36:53 -07:00
Todd Gamblin
eb9859ce75 Executables now have a useful __str__ function. 2015-06-06 16:15:52 -07:00
Todd Gamblin
53feb12ea0 Cleanup and consolidate error handling 2015-06-06 15:50:01 -07:00
Todd Gamblin
5d7a6c0c46 Add FileFilter convenience class to llnl.util.filesystem. 2015-06-06 15:26:48 -07:00
Saravan Pantham
454d06c25c Removed autosave files from previous commit. 2015-06-06 15:26:37 -07:00
Saravan Pantham
c174fe6199 Fixed BLAS and Lapack installations 2015-06-06 15:26:31 -07:00
Todd Gamblin
d19538af07 Fix #48: Ignore hidden files when deciding how to stage.
- Expanding archvies like MAGMA 1.6.2 creates extra hidden files that
  confuse Spack's staging mechanism.

- Added a special case to ignore hidden files when checking whether
  the tarball exploded.
2015-06-01 10:25:58 -07:00
Todd Gamblin
123778dec2 Add -S/--stages option to spack cd/spack location.
- can now change dir to top-level stage
2015-06-01 09:56:35 -07:00
Todd Gamblin
16c2588635 Fix #46: make(parallel=False) regression.
- Added some tests to make sure this stays in place.
2015-05-31 13:03:30 -07:00
Todd Gamblin
ea7b65e2f2 SPACK-69: spack install now logs build output to install directory.
- spack install suppresses build output by default.
  - use install -v to show build output on the console too

- package.py uses log_output context to redirect output and log it to a file
  - filters color codes out of output written to file
  - optionally echos to the terminal

- YAML directory layout knows about its build log.
  - can get path to install build log to from directory layout
  - Package.install now copies the build log to $prefix/.spack/build.out

- Error message from failed install execution now includes build log location
2015-05-29 17:22:33 -07:00
Todd Gamblin
92c21d7134 debug instead of info logging in llnl.util.filesystem 2015-05-29 17:21:30 -07:00
Todd Gamblin
0035100186 SPACK-69: Add context manager to fork and log output in a with block. 2015-05-29 17:20:08 -07:00
Todd Gamblin
9b40d93fc2 Add ability to force color mode even if terminal is NOT a tty 2015-05-29 17:19:03 -07:00
Todd Gamblin
ceecd2ce41 Add ability to test whether tty verbose or debug is enabled. 2015-05-29 17:18:33 -07:00
Todd Gamblin
5676cb0dd1 Add spack find -L to show full hashes. 2015-05-28 17:13:57 -07:00
Todd Gamblin
8cbae642cc Fix bug in spack edit -c 2015-05-28 17:13:23 -07:00
Todd Gamblin
6f8f1bf7af Fix #34: Spack doesn't stop when dep fails to build.
- Fixes regression introduced by #30
- Child process needs to exit on error
2015-05-27 20:27:48 -07:00
Todd Gamblin
c622337802 Remove redundancy: convert with closing(open(...)) to with open(...) 2015-05-18 17:11:03 -07:00
Todd Gamblin
f813d823a1 Merge branch 'features/optional-deps' into develop
This includes:
- Much better variant support (+debug/-debug)
- Optional dependency support (depends_on(... , when='<condition>')
- New config file format (YAML in ~/.spack)
- New Spec format (YAML in $prefix/.spack/spec.yaml)
2015-05-18 16:16:20 -07:00
Matthew LeGendre
46b91ddf57 YAML config files for compilers and mirrors 2015-05-18 16:01:21 -07:00
Todd Gamblin
09151785b3 SPACK-87: enable disabled git fetch tests. 2015-05-18 11:32:15 -07:00
Todd Gamblin
b2f46c703d Fix SPACK-87: Tag checkout fails for older git versions. 2015-05-18 11:26:32 -07:00
Todd Gamblin
cd1ca36488 SPACK-41: More tests to ensure that constrain() reports changes. 2015-05-12 15:48:57 -07:00
Todd Gamblin
805122c789 SPACK-41: bugfix for nonconvergent normalize()
- constrain() wasn't reporting changes properly.
2015-05-12 14:52:46 -07:00
Todd Gamblin
095ff1cb4a Add debug handler to print a stacktrace on Ctrl-C in debug mode. 2015-05-12 14:52:41 -07:00
Todd Gamblin
c44db0133f Fix SPACK-41: Optional deps work with complex condition chains. 2015-05-12 11:45:48 -07:00
Todd Gamblin
cd5fa128c5 Work on SPACK-41: Optional dependencies work for simple conditions.
- Can depend conditionally based on variant, compiler, arch, deps, etc
  - normalize() is not iterative yet: no chaining depends_ons
  - really need a SAT solver, but iterative will at least handle
    simple cases.

- Added "strict" option to Spec.satisfies()
  - strict checks that ALL of other's constraints are met (not just
    the ones self shares)
  - Consider splitting these out into two methods: could_satisfy() and
    satisfies()
    - didn't do this yet as it would require changing code that uses
      satisfies()

- Changed semantics of __contains__ to use strict satisfaction (SPACK-56)

- Added tests for optional dependencies.

- The constrain() method on Specs, compilers, versions, etc. now
  returns whether the spec changed as a result of the call.
2015-05-12 09:56:59 -07:00
Todd Gamblin
ef9deeccd1 Merge branch 'features/yaml-spec' into features/optional-deps 2015-05-10 19:28:47 -07:00
Todd Gamblin
09fff39990 Merge remote-tracking branch 'origin/features/variants' into features/optional-deps 2015-05-10 18:59:56 -07:00
Todd Gamblin
13ff1a9bf6 Remove debug print in link_tree 2015-05-10 18:53:09 -07:00
Todd Gamblin
b4a26c496c Better hash output in find. 2015-05-10 18:48:42 -07:00
Todd Gamblin
43e5465592 Fix bug in directory layout hidden files() 2015-05-10 17:56:27 -07:00