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2022 commits

Author SHA1 Message Date
Glenn Johnson
dbf799bbf9 New package - r-gdata 
Data manipulation tools.
 2016-07-31 15:07:40 -05:00
Todd Gamblin
173a16b38a Merge pull request #1396 from glennpj/r-quantmod 
New package - r-quantmod
 2016-07-30 20:15:53 -07:00
Todd Gamblin
68ba5377c1 Merge pull request #1395 from glennpj/r-ggmap 
New package - r-ggmap and dependencies
 2016-07-30 20:14:57 -07:00
Todd Gamblin
253507c0c3 Merge pull request #1394 from glennpj/r-maps 
New package - r-maps
 2016-07-30 20:14:27 -07:00
Todd Gamblin
7684652ce3 Merge pull request #1393 from glennpj/r-maptools 
New package - r-maptools
 2016-07-30 20:14:19 -07:00
Todd Gamblin
b12dc34ba7 Merge pull request #1391 from glennpj/r-caret 
New package - r-caret
 2016-07-30 20:14:09 -07:00
Todd Gamblin
9c31ee8a75 Merge pull request #1390 from glennpj/r-glmnet 
New package - r-glmnet
 2016-07-30 20:13:50 -07:00
Todd Gamblin
ae5ba2b110 Merge pull request #1389 from glennpj/r-vcd 
New package - r-vcd
 2016-07-30 20:13:05 -07:00
Todd Gamblin
13499f1655 Merge pull request #1388 from glennpj/r-multcomp 
New package - r-multcomp
 2016-07-30 20:12:51 -07:00
Todd Gamblin
49e9f365d8 Merge pull request #1387 from glennpj/r-randomforest 
New package r-randomforest
 2016-07-30 20:12:21 -07:00
Glenn Johnson
41cd861861 New package - r-quantmod 
Qualitative Financial modelling framework.
 2016-07-30 18:25:43 -05:00
Glenn Johnson
2913aa8d09 New package - r-ggmap and dependencies 
Spatial visualization with ggplot2
 2016-07-30 18:14:02 -05:00
Glenn Johnson
1bd2def41e New package - r-maps 
Draw geographical maps.
 2016-07-30 17:34:07 -05:00
Glenn Johnson
386f0e577a New package - r-maptools 
Tools for reading and handling spatial objects.
 2016-07-30 17:26:31 -05:00
Glenn Johnson
7207ce2a18 New package - r-caret 
Classification and Regression Training
 2016-07-30 16:53:54 -05:00
Glenn Johnson
20e52e5052 New package - r-glmnet 
Lasso and Elastic-Net Regularized Generalized Linear Models
 2016-07-30 16:38:00 -05:00
Glenn Johnson
e9944150a5 New package - r-vcd 
Visualizing Categorical Data
 2016-07-30 16:28:43 -05:00
Glenn Johnson
fc1804974c New package - r-multcomp 
Simultaneous Inference in General Parametric Models.
 2016-07-30 16:09:57 -05:00
Glenn Johnson
12167e8f37 New package r-randomforest 
Breiman and Cutler's Random Forests for Classification and Regression.
 2016-07-30 15:39:28 -05:00
Glenn Johnson
ee7acc6b13 New package r-car 
Companion to Applied Regression.
 2016-07-30 15:10:25 -05:00
Todd Gamblin
e04662f84f Merge pull request #1344 from LLNL/bugfix/py-nose-nosetests 
do not ignore nosetests script in py-nose
 2016-07-28 10:19:13 -07:00
becker33
5caaa2cd75 Merge pull request #1331 from adamjstewart/fixes/mvapich2 
MVAPICH2 depends on libpciaccess
 2016-07-28 09:52:51 -07:00
becker33
3759f62cba Merge pull request #1235 from davydden/pkg/p4est_run_tests 
p4est: use run_tests instead of a variant
 2016-07-27 18:36:36 -07:00
Todd Gamblin
458deaae5e Merge pull request #1350 from adamjstewart/fixes/openssl 
Fix OpenSSL url_for_version
 2016-07-27 08:08:00 -07:00
becker33
969e785d94 Merge pull request #1352 from glennpj/r_googlevis 
New package - r-googlevis
 2016-07-25 10:25:47 -07:00
becker33
5b7ec8de95 Merge pull request #1351 from glennpj/r_htmlwidgets 
New packages - R htmlwidgets
 2016-07-25 10:25:19 -07:00
Glenn Johnson
27986c9edf New packages - R htmlwidgets 2016-07-24 16:43:35 -05:00
Glenn Johnson
b7bf88c761 New package - r-googlevis 2016-07-24 16:38:36 -05:00
Adam J. Stewart
29278090eb Fix OpenSSL url_for_version 2016-07-24 15:19:27 -05:00
Glenn Johnson
a8855f48aa Add dependency type tp r- packages 
This PR adds the `nolink` dependency type to r- package dependencies.
This is needed due to the new dependency types in Spack. A couple of
packages were updated with new versions as well.
 2016-07-23 19:43:55 -05:00
Greg Lee
773bca159a do not ignore nosetests script in py-nose 2016-07-22 15:49:36 -07:00
Todd Gamblin
395c616a48 Merge pull request #950 from xjrc/packages/python 
Enhancement Proposal: Make Python Spack Installs Ignore User Configuration
 2016-07-22 13:56:19 -07:00
Joseph Ciurej
fa92f58167 Adding temporary script that fixes all Python extensions w/ 'setup_py'. 2016-07-22 11:17:19 -07:00
Joseph Ciurej
ac2e0962ce Improved the build flag construction code in the python install method. 2016-07-22 11:12:02 -07:00
Joseph Ciurej
fb2d2303d6 Fixed a bug that was causing Python installs to be affected by user config. 2016-07-22 11:11:08 -07:00
Todd Gamblin
f5b4664c7c Merge pull request #1336 from glennpj/rcase 
Fix alpha case of dependencies for some r-packages
 2016-07-22 10:08:14 -07:00
Todd Gamblin
adffba5081 Merge pull request #1230 from hartzell/update-jdk 
Add URL and md5 for jdk-8u92.
 2016-07-21 22:06:29 -07:00
Glenn Johnson
e083c91d5e Fix alpha case of dependencies. 
A while ago I was asked to convert packages to all lowercase. That was
done but some dependencies did not get converted in the specification.
This commit fixes that as well as a couple of urls that need to be made
explicit and a missing dependency on jdk.
 2016-07-21 19:58:04 -05:00
Todd Gamblin
ed737cb2a2 Merge pull request #1333 from LLNL/features/no-openssl-pinging 
Remove remote website pinging from OpenSSL
 2016-07-21 16:46:59 -07:00
Todd Gamblin
488550c2e6 Merge pull request #1334 from hartzell/add-gcc-5.4.0 
Update gcc package with info about gcc-5.4.0
 2016-07-21 16:37:31 -07:00
Todd Gamblin
8523f75e6c Remove remote website pinging from OpenSSL 
- OpenSSL no longer checks remote versions on the openssl site.

- Spack is used on systems that aren't connected to the internet, and
  this check is probably in the wrong place and affects too many
  commands.  We can work on figuring out a better, more configurable
  place to put a check like this.
 2016-07-21 16:35:20 -07:00
George Hartzell
4efe022165 Update with info about gcc-5.4.0 2016-07-21 15:36:22 -04:00
George Hartzell
4c105895ab Fix flake8 violations 2016-07-21 14:24:51 -04:00
George Hartzell
9523e50732 Fix shebang line in tcl scripts 
Lmod's configure script goes to the trouble of finding
tclsh.  This change uses that info to rewrite the #! lines
in the tcl scripts so that they call the tclsh that the
configure script discovered.

It needs to massage the existing shebang lines into something
that the sed statement in the makefile can manipulate and
it needs to add the path_to_tclsh info into the set of sed
statements.

Checked with versions 6.4.1 and 6.3.7 (the checksum for 6.0.1 is
incorrect, a fix for another time).
 2016-07-21 13:58:16 -04:00
George Hartzell
52f0249c61 tcl is actually a runtime dependency. 
lmod uses tclsh at runtime, so adjust the depends_on accordingly
(thanks @davydden!).
 2016-07-21 13:51:03 -04:00
George Hartzell
a27cb639d8 The lmod package should depend_on('tcl') 
The lmod package needs a tclsh.  Up until now it just assumed
that one was available on the system.

This change adds a depends_on('tcl') to the lmod package.

The tcl package installs a tclsh script with an embedded version
number (e.g. tclsh8.6) but the lmod configuration looks for tclsh.
This change extends the tcl package to symlink tclshX.Y to tclsh in
the tcl package bin directory.
 2016-07-21 13:51:03 -04:00
Adam J. Stewart
cf8f14780f MVAPICH2 depends on libpciaccess 2016-07-21 11:13:17 -05:00
Glenn Johnson
ead1b93f75 MPI related changes 
- Redid the code for setting the itac symlink for the cluster edition.
- Removed the *PATH variables for MPI to avoid a conflict with other MPI
  environment modules.
- Added missing test for `+all` when checking variants.
 2016-07-20 20:03:05 -05:00
Glenn Johnson
0be4c7dfbd Changes as discussed in PR review 
- removed unneeded entry for `debugger/gdb/intel64_mic`
- set `+mpi` directory name to impi
 2016-07-20 20:03:05 -05:00
Glenn Johnson
5e5e36a659 Fix flake8 errors. 2016-07-20 19:54:35 -05:00