Commit graph

21494 commits

Author SHA1 Message Date
vvolkl
2c6c6756a8
[assimp] add new version 5.0.1 (#21191) 2021-01-21 10:45:21 -06:00
Harmen Stoppels
0cf0be588b
Always set SPLA_OMP and SPLA_STATIC (#21195) 2021-01-21 10:43:57 -06:00
Gerasimos Chourdakis
1ceab34fc8
precice: Add version 2.2.0 (#21166) 2021-01-21 09:38:53 -06:00
Jen Herting
d9a8ff455e
[py-numba] added version 0.51.1 (#21182)
* [py-numba] added version 0.51.1

* [py-numba] updated llvmlite dependencies
2021-01-21 09:38:35 -06:00
Rémi Lacroix
afa536fc1d
Plumed: Add a new ArrayFire variant. (#20624) 2021-01-21 09:29:11 -06:00
Rémi Lacroix
6f166283ca
ArrayFire improvements (#20615)
* ArrayFire: Add version 3.7.2.

* ArrayFire: Allow using MKL as the FFTW provider.

* ArrayFire: Ensure the libraries are properly found.

The required backend(s) can be specified in the library query.
2021-01-21 09:29:00 -06:00
Simon Frasch
10baa48d95
spfft: add version 1.0.1 (#21193) 2021-01-21 15:23:01 +01:00
Scott McMillan
fcf99be939
openssl: remove preprocessor flags incompatible with NVIDIA HPC SDK (#21180)
* openssl: remove preprocessor flags incompatible with NVIDIA HPC SDK

* Update var/spack/repos/builtin/packages/openssl/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-20 21:42:53 -06:00
Toyohisa Kameyama
c5ed46e026
libcap-ng: fix detect python. (#21162)
* libcap-ng: fix detect python.

- add python variant.
- add --with-python and --with-python3 configure option.

* fix style.

* - Add python variant.
- change - to --
2021-01-20 21:42:36 -06:00
Tomoyasu Nojiri
bf3fb8428d
util-linux: Add ncurses depend (#21165) 2021-01-20 21:40:03 -06:00
Tomoyasu Nojiri
644b8b52e2
systemtap: Add depend (#21163)
* systemtap: Add depend

* systemtap: Fix depend
2021-01-20 21:31:04 -06:00
Scott McMillan
2ea336e6aa
libevent: Remove compiler flags incompatible with NVIDIA HPC SDK (#21181)
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-01-20 17:38:34 -06:00
Greg Sjaardema
6ecc3fc06f
SEACAS: New version v2021-01-20 (#21178)
Added a new version due to new application `nas2exo` and also adding the build of `slice` if `+applications` is specified.
2021-01-20 17:07:38 -06:00
Jen Herting
69bfdb0843
[py-statsmodels] added version 0.12.1 and updated dependencies accord… (#21175)
* [py-statsmodels] added version 0.12.1 and updated dependencies accordingly

* [py-statsmodels] added python requirements for new version and fixed formatting for readability
2021-01-20 17:07:10 -06:00
Sergei Shudler
a95bf8df43
Mirror current E4S hypre test suite test as a smoke test (#20484) 2021-01-20 15:05:25 -08:00
bryanherman
a6ea16ded5
Fix PVM dependencies (#20951)
* added m4 dep to PVM recipe

* added libtirpc dep to PVM recipe

* decode str or bytestr string to unicode

* Resolved comments from @adamjstewart on setup_build_environment
2021-01-20 15:52:22 -06:00
Robert Brunner
966f6bc2d2
Propagate SCR resource_manager flag to libyogrt dependency (#21168)
* When the SCR spec specifies a resource_manager=SLURM or LSF flag, propagate the spec through to
the libyogrt scheduler=slurm or lsf

* Use libyogrt default scheduler option when the SCR spec does not specify LSF or SLURM
2021-01-20 15:51:46 -06:00
Scott McMillan
0e2fa561f3
Perl: NVIDIA HPC SDK updates (#21177)
* Perl: NVIDIA HPC SDK updates

* fix indentation

Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2021-01-20 15:51:06 -06:00
eugeneswalker
7f86cc87b0
store sbang_install_path in buildinfo, use for subsequent relocation (#20768) 2021-01-20 12:43:07 -08:00
Rémi Lacroix
bef250535a
Plumed: Ensure the Python interfaces are also built with Spack's wrappers. (#20625) 2021-01-20 14:12:27 -06:00
Rémi Lacroix
23181d24a2
PETSc: Add a new ptscotch variant. (#20699)
Currently the Parmetis wrapper is disabled which means nested dissection cannot be used with PTScotch.
2021-01-20 14:11:23 -06:00
Evan Bollig
2d9e36c4f0
updated relion package for new versions (#21155)
* updated relion for new versions

* Switched to checksum versions

* Enabled spack tracking for MKL and TBB when CPU optimizations are enabled

* Added variants to control MKL FFT and Ppatent feature

* Replaced tags with sha256 for older versions an and switched to virtual packages
2021-01-20 13:53:59 -06:00
Andrew-Dunning-NNL
28c0f20214
py-funcy: new recipe (#21136)
* py-funcy: new recipe

* Update var/spack/repos/builtin/packages/py-funcy/package.py

add build and run python dependencies

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-20 13:53:13 -06:00
Tomoyasu Nojiri
085360ec0b
qwt: Fix qt depend (#21161) 2021-01-20 13:47:03 -06:00
Erik Schnetter
d11ba90198
z3: New version 4.8.9 (#21167) 2021-01-20 13:36:46 -06:00
Baptiste Jonglez
95b974707b
openjdk: Add ppc64le package (#21173) 2021-01-20 13:30:39 -06:00
Omar Padron
43935b4917
fix an issue where some variants were not being concatenated correctly (#21174) 2021-01-20 13:27:41 -06:00
darmac
6f3027b9fb
py-iminuit: update version to fix test error (#21143)
* py-iminuit: update version to fix test error

* py-iminuit: update py-numpy limitation

* py-iminuit: fix dependency mistake
2021-01-20 13:22:35 -06:00
Tomoyasu Nojiri
a187b2fb09
py-mikado: Add version 1.2.4 (#20678)
* py-pysam: Add version 0.15.3

* py-biopython: Add version 1.78

* py-mikado: Add version 1.2.4

* py-mikado: Reflection of review points.

* py-biopython: Add python depend

* py-mikado: Fix depend

* py-mikado: Add py-tabulate depend
2021-01-20 13:21:59 -06:00
Nathan Hanford
ebc871abbf
[WIP] relocate.py: parallelize test replacement logic (#19690)
* sbang pushed back to callers;
star moved to util.lang

* updated unit test

* sbang test moved; local tests pass

Co-authored-by: Nathan Hanford <hanford1@llnl.gov>
2021-01-20 09:17:47 -08:00
Tomoyasu Nojiri
c63f680d2a
r-farver: Fix checksum for 2.0.1 (#20897) 2021-01-19 17:45:51 -08:00
Omar Padron
49141f9528
fix typo in ec-data-vis-sdk package (#21156) 2021-01-19 17:09:42 -06:00
mlawsonca
881ca8406c
fixing outdated metis link (#21003)
* fixing outdated metis link

* updated url to the official website since the previous url was a GitHub repo that is an unofficial mirror that only contains the latest version
2021-01-19 16:58:38 -06:00
Andrew-Dunning-NNL
8a92ebd504
py-pyjnius: new recipie (#21150) 2021-01-19 16:57:10 -06:00
Andrew-Dunning-NNL
c6cb0d7869
py-dictdiffer: new recipe (#21151)
* py-dictdiffer: new recipie

* Update var/spack/repos/builtin/packages/py-dictdiffer/package.py

add correct setuptools dependency

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2021-01-19 16:56:53 -06:00
Andrew-Dunning-NNL
6de193fd27
py-pytest-arraydiff: new recipie (#21152) 2021-01-19 16:56:38 -06:00
Andrew-Dunning-NNL
7a913582f2
py-phonenumbers: new recipie (#21153) 2021-01-19 16:56:24 -06:00
Andrew-Dunning-NNL
d3b04f7704
py-pygtrie: new recipie (#21154) 2021-01-19 16:56:09 -06:00
Erik Schnetter
0c5602dc4e
amrex: remove build_type variant (#20938)
This variant is already provided by CMakePackage.
2021-01-19 19:17:37 +01:00
William Downs
35a51760a8
esmf: Add versions 8.0.0 and 8.0.1 (#21147) 2021-01-19 10:52:47 -06:00
Harmen Stoppels
034debeba5
Always set cmake args because defaults change across versions (#21146) 2021-01-19 09:57:12 -06:00
ketsubouchi
8a6e7c8687
cpmd: new package (#21138) 2021-01-19 09:02:09 -06:00
Tomoyasu Nojiri
ab83b6689e
sortmerna: Fix for aarch64 (#21126) 2021-01-19 09:01:16 -06:00
yellowhat
89b9d07efa
gromacs: add v2020.5 (#21144) 2021-01-19 10:26:35 +01:00
Robert Brunner
91f65b9772
libyogrt: add lsf scheduler support, create yogrt.conf file (#19960)
Tell the libyogrt installer to create a yogrt.conf file, specifying whatever 
scheduler was specified in the scheduler=XXX parameter.
2021-01-19 10:01:48 +01:00
Adam J. Stewart
86e9d93859
libidn2:use http for download (#21001)
This is needed since libidn is used to bootstrap curl
2021-01-19 09:54:25 +01:00
Pramod Kumbhar
908528f2f1
NEURON: add v7.8.2, move to CMake and remove all old versions (#20582)
* Update NEURON simulator package
  - update recipe to support autoconf as well as cmake
  - new versions >=7.8 support cmake
  - remove old variants
  - added patch for latest bug fix release 7.8.2

Co-authored-by: Kumbhar Pramod Shivaji <kumbhar@bbpv1.epfl.ch>
Co-authored-by: Kumbhar Pramod Shivaji <kumbhar@bb-c02vf1h0hv2r.epfl.ch>
2021-01-19 09:42:50 +01:00
Thomas Madlener
a92bb5400e
lcio, sio: add sio dependency, update versions and expose zlib version for sio (#20839) 2021-01-19 09:20:43 +01:00
Glenn Johnson
82b10583f9
r-grbase: added v1.8-6.7 (#21033) 2021-01-19 09:10:21 +01:00
Tomoki, Karatsu
5033250140
specfem3d-globe: add new package (#20830) 2021-01-19 08:55:18 +01:00