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Author SHA1 Message Date
Adam J. Stewart
b47357d73c Add patch for Intel compilers 2016-08-11 10:22:47 -05:00
Adam J. Stewart
5fc20487e4 Flake8 and formatting changes 2016-08-11 10:22:47 -05:00
Adam J. Stewart
534e1cbf1b Some tests don't pass with Intel compilers 2016-08-11 10:20:08 -05:00
Adam J. Stewart
ee5e20dae3 Add dependencies to libarchive and cmake 2016-08-11 10:17:42 -05:00
Adam J. Stewart
58d7704060 Overhaul of compression libraries 2016-08-11 10:15:13 -05:00
Mayeul d'Avezac
7769367747 dag_hash stabilised by depending on sorted dict 
Spec.to_node_dict uses OrderedDict

This is to try and ensure that the dag_hash is stable across python
version and processes.
 2016-08-11 16:03:50 +01:00
Adam J. Stewart
87d0a7c315 Always clean up tmp files, even if killed 2016-08-11 09:56:41 -05:00
Adam J. Stewart
09c9786fab Allow run-flake8 to be run from anywhere 2016-08-11 09:53:04 -05:00
Adam J. Stewart
1edfc82123 Run flake8 checks on changed uncommitted files 2016-08-11 09:53:04 -05:00
Todd Gamblin
e6a122417a Merge pull request #1491 from eschnett/eschnett/curl 
Update curl to 7.50.1
 2016-08-11 03:04:07 -07:00
alalazo
f5433477b9 qa : flake8 issues 2016-08-11 09:08:00 +02:00
alalazo
b4b9ebe7d7 Merge branch 'develop' of https://github.com/LLNL/spack into features/install_with_phases 
Conflicts:
	lib/spack/llnl/util/tty/log.py
	lib/spack/spack/__init__.py
	lib/spack/spack/cmd/install.py
	lib/spack/spack/cmd/setup.py
	lib/spack/spack/package.py
	var/spack/repos/builtin/packages/blitz/package.py
	var/spack/repos/builtin/packages/gmp/package.py
	var/spack/repos/builtin/packages/qhull/package.py
	var/spack/repos/builtin/packages/szip/package.py
 2016-08-11 08:55:20 +02:00
becker33
f59653ac2c Merge pull request #1496 from LLNL/features/pep8-compliance 
PEP8 compliance
 2016-08-10 17:36:31 -07:00
Todd Gamblin
84e331c586 Remove unneeded noqa comments. 2016-08-10 16:33:39 -07:00
Todd Gamblin
db59f87e32 Update README.md for PEP8 2016-08-10 16:33:39 -07:00
Todd Gamblin
240f1fd223 Spack packages now PEP8 compliant. 2016-08-10 16:33:39 -07:00
Todd Gamblin
867121ca68 Move jsonschema files out of config.py to their own package. 2016-08-10 16:33:38 -07:00
Todd Gamblin
bf1072c902 Make Spack core PEP8 compliant. 2016-08-10 16:33:37 -07:00
Todd Gamblin
8061deb883 Merge pull request #1495 from LLNL/bugfix/module-init-deprecation-gh1494 
Fix superclass constructor args.
 2016-08-10 16:12:23 -07:00
Todd Gamblin
e7f4fd404d Fix superclass constructor for SpackNamespace objects. 2016-08-10 15:54:13 -07:00
Joseph Ciurej
aa860bf4df Fixed a bug that was making packages with non-bool default variants to crash. 2016-08-10 11:54:33 -07:00
Erik Schnetter
158deae625 Update curl to 7.50.1 2016-08-10 13:51:57 -04:00
becker33
cfde03e694 Merge pull request #1485 from hartzell/patch-6 
Fix typo 'flexbile' -> 'flexible'
 2016-08-09 15:34:51 -07:00
George Hartzell
4bca1c5440 Fix typo 'flexbile' -> 'flexible' 2016-08-09 15:13:08 -07:00
Todd Gamblin
d380d16427 Merge pull request #1482 from mpbelhorn/olcf/do_not_use_ssl_to_fetch_upstream_openssl 
Openssl package should not require openssl (https) to obtain source.
 2016-08-09 13:22:31 -07:00
Matt Belhorn
2be065418b Openssl package should not require openssl (https) to obtain source. 2016-08-09 15:57:07 -04:00
Todd Gamblin
a095fd517f Merge pull request #1015 from LLNL/features/faster-virtuals 
Faster virtuals and concretization
 2016-08-09 10:33:40 -07:00
becker33
fb9f6fe9b5 Merge pull request #1473 from epfl-scitas/packages/plumed_dependents 
plumed : added dependents (gromacs, cp2k)
 2016-08-09 09:14:33 -07:00
Todd Gamblin
9d4a36a62f Properly re-raise exceptions from lock context handler. 2016-08-09 02:25:09 -07:00
Todd Gamblin
0c75c13cc0 Flake8 fixes 2016-08-09 02:25:07 -07:00
alalazo
38dcd6bce9 qa : flake8 issues 2016-08-09 09:54:24 +02:00
Todd Gamblin
102ac7bcf1 Move provider cache to home directory and refactor Transactions 
Major stuff:

- Created a FileCache for managing user cache files in Spack.  Currently just
  handles virtuals.

- Moved virtual cache from the repository to the home directory so that users do
  not need write access to Spack repositories to use them.

- Refactored `Transaction` class in `database.py` -- moved it to
  `LockTransaction` in `lock.py` and made it reusable by other classes.

Other additions:

- Added tests for file cache and transactions.

- Added a few more tests for database

- Fixed bug in DB where writes could happen even if exceptions were raised
  during a transaction.

- `spack uninstall` now attempts to repair the database when it discovers that a
  prefix doesn't exist but a DB record does.
 2016-08-09 00:24:54 -07:00
alalazo
5362864cc9 plumed : fixed name clash on attribute 2016-08-09 09:24:36 +02:00
Massimiliano Culpo
15d9fb1879 plumed : adding dependents 
* cp2k : added plumed
* gromacs : patched pme load balancing
* gromacs : added plumed
 2016-08-09 09:23:53 +02:00
Todd Gamblin
2042e9a6d8 Fix bugs with sparse spec printing. 
- Make namespace, arch, and dependnecies show up in spec yaml
  only if they're set.

- Lost some of this functionality with deptypes
 2016-08-08 21:04:23 -07:00
Todd Gamblin
1339714eec Restore text output in verbose mode. 2016-08-08 21:04:23 -07:00
Todd Gamblin
5d690c9270 Make compiler command test last until caching is fixed. 
- global compiler cache breaks tests that come after this one.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
e5743db9b9 Fix issues with import order in tests. 
- modules weren't set properly as attributes in parent modules
 2016-08-08 21:04:23 -07:00
Todd Gamblin
d195576fba WIP 2016-08-08 21:04:23 -07:00
Todd Gamblin
5e5024342f Fix iterator invalidation issues. 2016-08-08 21:04:23 -07:00
Todd Gamblin
4de45c2684 fix scoping issue. 2016-08-08 21:04:23 -07:00
Todd Gamblin
ce6ac93abe rename virtual module to provider_index 2016-08-08 21:04:23 -07:00
Todd Gamblin
1f5a21decf Fix namespace support in Repo.get_pkg_class() 2016-08-08 21:04:23 -07:00
Todd Gamblin
ab049eca41 Faster key in FlagMap._cmp_key 2016-08-08 21:04:23 -07:00
Todd Gamblin
37fc258313 Remove vestigial methods from Package. 2016-08-08 21:04:23 -07:00
Todd Gamblin
faa0a0e4c3 Add a ProviderIndex cache. 
- Spack will check if the index needs updating, and will only parse
  all package files if it does.

- Spack tries to parse as few package files as necessary.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
cf2f902b82 Make ProviderIndexes mergeable, so we can cache them per-repo. 2016-08-08 21:04:23 -07:00
Todd Gamblin
bf028990e7 Make ProviderIndex yaml-izable. 
- allow a provider index to be stored and re-read.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
025609c63f More compact YAML formatting for abstract specs. 
- Don't add empty/absent fields to Spec YAML when they're not there.
 2016-08-08 21:04:23 -07:00
Todd Gamblin
7aaad89ba9 Lazily evaluate all_package_names in repository.py 
- Don't need to list all packages unless we have to.

- Only use the list of all packages for existence checks if we have
  generated it for some other purpose.
 2016-08-08 21:04:23 -07:00