Commit graph

16056 commits

Author SHA1 Message Date
Glenn Johnson
74c159b883
New package: sumo (#16096)
* New package: sumo

This PR adds the sumo package, as well as the fox package as a
dependency. It also updates and adds some fixes for openscenegraph.

For fox, the patch is for the development version. That patch should not
be necessary in future versions as it has been applied upstream. The
stable version is 1.6.57 and is marked as preferred. This is the version
needed for sumo.

Added dependencies for openscenegraph as well as set constraints on qt
versions.

* Update var/spack/repos/builtin/packages/sumo/package.py

I had intended to set this version constraint but somehow did not.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Add dependency types to sumo recipe

- googletest: 'test'
- swig: 'build'
- java: 'build', 'run'

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-04-21 13:27:34 -05:00
Adam J. Stewart
4f5bd044d6
py-torchvision: add new version (#16208) 2020-04-21 11:43:30 -05:00
Michael Kuhn
752342430b
gettext: Fix typo (#16206) 2020-04-21 09:33:51 -07:00
Michael Kuhn
eb7c0e5d7d
gettext: Fix typo (#16206) 2020-04-21 08:49:59 -07:00
Michael Kuhn
b9655636ce
gettext: Fix typo (#16206) 2020-04-21 08:48:48 -07:00
Andrew Gaspar
a41b9365a9
catch2: added v2.12 (#16207) 2020-04-21 17:15:59 +02:00
Michael Kuhn
cd5d477db9
qgis: Fix pkgconfig dependency (#16188) 2020-04-21 08:02:45 -05:00
Axel Huebl
6c8e15ee18
gettext: add missing iconv dependency (#16193)
`gettext` will pick up a random `iconv` dependency if not
specified, which crashes python and its own builds on macOS.
2020-04-20 21:47:04 -07:00
Christoph Junghans
ca86e56572
votca-*: remove rc versions (#16197) 2020-04-20 20:30:43 -06:00
darmac
e4805bb75f
Add new package: sse2neon (#16168) 2020-04-20 16:59:51 -05:00
Adam J. Stewart
45fee6edbd
Python: add latest Python 2 releases (#16191) 2020-04-20 16:57:08 -05:00
G-Ragghianti
5e69125e51
Implemented +shared and +static_tools variants (#16105) 2020-04-20 16:54:44 -05:00
Toyohisa Kameyama
c6ef9c2b87
Add ppOpen-APPL/FDM and ppOpen-APPL/FDM-AT. (#16116) 2020-04-20 16:36:36 -05:00
Toyohisa Kameyama
8e7f55e6d6
ppOpen-APPL/DEM-util: New package (#16120) 2020-04-20 16:29:06 -05:00
darmac
c2ca832883
Add new package: audacious (#16121) 2020-04-20 16:24:33 -05:00
darmac
e8a7e4f5ec
Add new package: bgpdump (#16122) 2020-04-20 16:23:47 -05:00
darmac
cf12541281
Add new package: byacc (#16123)
* Add new package: byacc

* refine byacc info
2020-04-20 16:22:37 -05:00
Amjad Kotobi
a70e76d043
Package Bonniepp adding sbin to PATH (#16124) 2020-04-20 16:19:55 -05:00
Michael Kuhn
8635c0d804
rocksdb: Add 6.7.3 (#16189)
This also adds a shared variant, so we can build both the static and
shared libraries at the same time. It also adds a pkg-config file.
2020-04-20 16:16:51 -05:00
Michael Kuhn
e3966d2791
pixman: Add 0.40.0 (#16190) 2020-04-20 16:16:39 -05:00
Amjad Kotobi
78f1940646
update package py-graphviz version (#16131) 2020-04-20 16:11:07 -05:00
Hadrien G
ac17d0783a
Add Acts v0.22 (#16141) 2020-04-20 16:08:44 -05:00
darmac
eb0d82a7e4
Add new package: codec2 (#16142) 2020-04-20 16:07:44 -05:00
darmac
126491288a
Add new package: libsamplerate (#16143) 2020-04-20 16:07:18 -05:00
darmac
cab1d06d6a
Add new package: collectd (#16144) 2020-04-20 16:06:31 -05:00
darmac
ed13319a4b
Add new Package: accumulo (#16148) 2020-04-20 15:59:16 -05:00
Justin S
73e0dd9f61
prism: new package at 4.5 (#16187) 2020-04-20 15:39:53 -05:00
Michael Kuhn
1f49fb8ceb
python: Add 3.7.7 (#16170) 2020-04-20 15:32:58 -05:00
Elizabeth Fischer
742a4b7e2a
proj (#16175)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-04-20 15:21:36 -05:00
Elizabeth Fischer
3a9ce3ac4a
glib (#16179)
Co-authored-by: Elizabeth Fischer <elizabeth.fischer@alaska.edu>
2020-04-20 15:15:38 -05:00
Adam J. Stewart
0db2f00635
PyTorch: remove CUDA conflicts (#16136) 2020-04-20 14:57:56 -05:00
Todd Gamblin
de13ea2284
autotools: remove FORCE_UNSAFE_CONFIGURE from docs, commands, code (#16145)
Since #16132, we've consolidated the setting of FORCE_UNSAFE_CONFIGURE to
`autotools.py`, so we don't need to use it in packages like `coreutils`,
in our commands, or in our container recipes.

- [x] Remove FORCE_UNSAFE_CONFIGURE from packages
- [x] Remove FORCE_UNSAFE_CONFIGURE from container recipes
- [x] Remove FORCE_UNSAFE_CONFIGURE from `spack ci` command
2020-04-20 08:32:03 -07:00
darmac
e9e2d1d3ca
Httpd: added package at v2.4.43 (#16152) 2020-04-20 09:32:39 +02:00
Glenn Johnson
dff5a4ba57
ngmerge: added package at v0.3 (#16160) 2020-04-20 09:26:22 +02:00
George Hartzell
c62f18304d
Typo: vew -> view (#16155) 2020-04-19 20:13:44 -05:00
Adam J. Stewart
9a522505e4
Cython: add new version (#16159) 2020-04-19 19:30:21 -05:00
Adam J. Stewart
f9733058a4
NumPy: add new version (#16158) 2020-04-19 17:28:18 -05:00
Toyohisa Kameyama
f1d48a2a8e
FrontFlow/Red: New Package. (#15965)
* FrontFlow/Red: New Package.

* fix comment.
use libs.ld_flags.

* typo fix.

* typo fix.
2020-04-18 22:58:43 -05:00
Veselin Dobrev
d9992a778f
CEED v3.0 release (#15500)
* [mfem] A few updates: add 'strumpack' variant; add 'zlib'
       variant (same as 'gzstream'); fix optmization flag
       for v4.0.

* [mfem] flake8 fix

* [mfem] Add version 4.1

* [mfem] Add/tweak some 'conflicts' directives.

* [gslib] Add new release versions + 'develop' version.

* [petsc] Restrict hdf5 version to <= 1.10.99 since 1.12.0 fails

* [metis] Use the original metis url for v4.0.3.

* [conduit] Remove restrictions to the used hdf5 variant to allow
          building with other packages that use hdf5, e.g. petsc.

* [mfem] Few updates:
* Replace the 'gzstream' variant with 'zlib' variant.
* Do not add system library paths with -L flags.
* Allow '+pumi+shared' variant.
* Update the 'test_builds.sh' script.

* [occa] Add version 1.0.9.

* [mfem] Some OCCA and RAJA updates.

* [gslib] Fix the build for new versions of the library.

* [mfem] Add 'gslib' variant for GSLIB.

* [mfem] Add 'cuda' variant.

* [mfem] Add 'libceed' variant + a few more tweaks.

* [mfem] Add 'umpire' variant.

* [ceed] Add a draft for v3.0. Not tested. Just made sure that
       concretization works for 'ceed' and 'ceed+cuda'.

* [nek] Fix Nek5000/NekCEM

* [nek] Add Nek5000-v19 & polishing Nek packages

* [flake8] Fix flake8 failure

* petsc: use of HDF5 does not care about +hl+fortran

* [petsc] Temporarily allow any hypre version with petsc@develop.

[ceed] Remove the requirement for hypre@develop.

* [libceed] Do not explicitly set NVCCFLAGS for v0.5 and later.

* [laghos] Add version 3.0, pointing to dev branch for now.
         Do not set CXX at the make command line.
         Simplify the dependecy directives a little.

[ceed] Use laghos v3.0 for ceed v3.0.0.

* [laghos] Keep the injection of CXX in the makefile for laghos
         versions <= 2.0.

* [nekcem] Recovert hash-versions used by older versions of the
         'ceed' package.

* [occa] Disable hip autodetection because it fails on some machines.

* [laghos] Update v3.0 with the actual release source.

* [suite-sparse] Explicitly add the c11 flag to CFLAGS.

* Update package.py (#15749)

* [magma] Add forgotten specification of the 'cuda_arch' variant.

* [ceed] Use magma v2.5.3 for ceed v3.0.

* libceed-0.6

* mfem: depend on libceed 0.6:, not 0.6.0:

* [libceed] Add 'magma' variant -- enable MAGMA backend.

* [ceed] In v3.0, use '+magma' variant of libceed when cuda is enabled.

* Initial package for Remhos (needs to be updated with actual sha256

* Adding Remhos to CEED-3.0, for now @develop

* petsc: add 3.13.0 (using petsc-lite) and 3.12.5

* ceed: update to petsc@3.13.0:3.13.99

* Temporary fix

* [nekcem] Add hash-version for ceed v3.0.

* [nek5000] Simplify source urls.

* [nektools] Use the same sources and versions as in nek5000.

* [ceed] Update Nek-related package versions.

* libceed: add v0.6 portabilty fix

* libceed: better v0.6 portabilty fix

* Adding Remhos 1.0 release in CEED-3.0

* Updating hash for Remhos-1.0

* [petsc] Add cuda variant.

* [libceed] Flake8 fix.

* [petsc] Add cuda variant.

* [ceed] Fix the OCCA version to 1.0.9. Enable petsc+cuda when
       compiling ceed@3.0.0+cuda.

* nek5000: fix python 2.7+ syntax

* [laghos] Fix testing.

* [remhos] Fix testing.

* [remhos] For testing use the 'tests' target instead of 'test'.

* Add/update the maintainers for ceed, libceed, mfem, laghos, and remhos.

* [ceed] Remove unnecessary dependencies.

* libceed: activate AVX when supported

Co-authored-by: Thilina Rathnayake <thilinarmtb@gmail.com>
Co-authored-by: Jed Brown <jed@jedbrown.org>
Co-authored-by: Stan Tomov <tomov@eecs.utk.edu>
Co-authored-by: Tzanio <tzanio@llnl.gov>
2020-04-18 16:57:57 -07:00
Diego Magdaleno
d640bf899a
autotools: set FORCE_UNSAFE_CONFIGURE to 1 in autotools.py (#16132)
This commit sets the `FORCE_UNSAFE_CONFIGURE` environment variable to 1 in autotools builds.

We see a lot of builds popping up and complaining about `FORCE_UNSAFE_CONFIGURE`.  This behavior is not actually part of `autoconf` per se.  It comes from this patch to `mknod.m4`, which is used by a lot of autoconf builds:

    * https://lists.gnu.org/archive/html/bug-gnulib/2010-07/msg00282.html

Which originated from this problem that someone had on AIX:

    * https://lists.gnu.org/archive/html/bug-gnulib/2010-07/msg00279.html

The gist of the problem seems to be that they want to check whether `mknod` can do something as root, but instead of checking whether they're running as root and using `su` or something to test this, they just made it harder to run `configure` as root.

This seems very ad hoc and this is one of many checks that are run as root in `configure`.  Many of them run before this check, so it's not clear that the `FORCE_UNSAFE_CONFIGURE` thing is even preventing bad things from happening.

So:
1. This only happens in `autotools` builds, so we should go ahead and put it into `autotools.py` instead of in the global build environment, and

2. The variable does too little and provides a false sense of security in the first place, so we'll just disable it and avoid the nuisance.  If we really feel strongly about this we can put some warnings in Spack about running as root, but at the top level, not in the middle of an already running script like `configure`.
2020-04-18 14:25:19 -07:00
Christoph Junghans
5d008dc37b
votca-*: add v1.6 (#16139) 2020-04-18 08:16:48 -07:00
Todd Gamblin
eaccc58156
remove files accidentally committed with 0.14.0 (#16138) 2020-04-17 22:28:33 -07:00
Daryl W. Grunau
6cb11d489b
DDD bugfix (#16095)
* DDD: apply extended-prompt patch

* DDD: apply extended-prompt patch

* use the upstream patch

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-04-17 21:34:49 -05:00
Levi Baber
73d78ae176
py-cutadapt: add version 2.9 (#16135) 2020-04-17 18:35:33 -07:00
Adam J. Stewart
def1d5e637
MPFR: fix patch checksum, add dependencies (#15783)
* MPFR: fix patch checksum, add dependencies

* Update checksum again
2020-04-17 16:30:45 -05:00
Adam J. Stewart
ea8793f8f5
AutotoolsPackage: add aclocal for all build deps (#15784) 2020-04-17 16:30:21 -05:00
Adam J. Stewart
28995b25bc
OpenMPI: add +cxx variant (#15477)
* OpenMPI: add +cxx variant

* C++ support will be removed in 5.0.X release
2020-04-17 16:29:50 -05:00
Adam J. Stewart
284e450c91
Language-specific PIC flags (#15474)
* Language-specific PIC flags

* Add tests for every compiler flag

* Fix bad rebase

* pic_flag -> cxx_pic_flag
2020-04-17 16:28:51 -05:00
Jordan Ogas
ad8977467b
charliecloud: fix url (#16133) 2020-04-17 13:51:18 -07:00
Nichols A. Romero
ebd86bd1eb
LLVM libomptarget fixes (#16104)
* Throw an error at spack install invocation instead of most of the way through the build process when cuda_arch is unspecified.

* Clean-up of CMake booleans. No actual change.

* Use CMake variables for hwloc and libelf installation directories and avoid injecting extra flags into CMAKE_CXX_FLAGS

* Conflict should only exist for +cuda variant.
2020-04-17 15:18:27 -05:00