Commit graph

13497 commits

Author SHA1 Message Date
G-Ragghianti
19b26f2938
PAPI package: added cuda and nvml support (#19896)
* Added cuda support

* Added cuda and nvml variants

* Refined version conflict logic.
2020-11-14 09:39:14 -06:00
ilbiondo
d439573c60
bpp-seq-omics package (#19733) 2020-11-14 08:35:27 -06:00
Adam J. Stewart
168dd6d03a
Don't use prefix.lib in tcl/tk/glib/etc (#19761) 2020-11-14 12:42:51 +01:00
darmac
cd7c2fca02
nbdkit: new package at v1.23.7 (#19922) 2020-11-14 12:39:13 +01:00
darmac
e549c32033
ncompress: new package at v4.2.4.6 (#19923) 2020-11-14 12:32:15 +01:00
Tomoki, Karatsu
e6b0019271
openblas: fix to build v0.3.11 or later with Fujitsu compiler. (#19853) 2020-11-14 12:29:30 +01:00
darmac
192bede002
libjson: new package at v0.8 (#19921) 2020-11-14 10:41:23 +01:00
darmac
3d6866cc1c
iproute2: new package at v5.9.0 (#19920) 2020-11-14 10:28:50 +01:00
darmac
a8cf529791
httping: new package at v2.5 (#19919) 2020-11-14 10:14:47 +01:00
darmac
ec13fe2216
hashcat: new package at v6.1.1 (#19918) 2020-11-14 10:14:12 +01:00
darmac
4a75871d70
argon2: new package at v20190702 (#19917) 2020-11-14 10:04:08 +01:00
darmac
2c43cf5b22
newt: new package at v0.52.21 (#19915) 2020-11-14 09:50:02 +01:00
Antonio Arena
ecc5ef3e7b
mathematica : added v12.1.1 (#19842) 2020-11-14 09:47:13 +01:00
Edoardo Aprà
6be5289e56
nwchem: remove patches for v6.6 (no longer supported) (#19906)
Since spack no longer offers NWChem 6.6, there is no need of the patch lines.
2020-11-14 09:45:18 +01:00
darmac
9ba6d485aa
ipcalc: new package at v0.2.3 (#19912) 2020-11-14 09:37:04 +01:00
Wouter Deconinck
98ac13619e
[gcc] depends_on diffutils (for all versions) (#19907) 2020-11-13 22:07:52 -08:00
Alexander Baumgarten
5f9de810ff
Updated STAR to version 2.7.6a (#19904) 2020-11-13 14:59:03 -06:00
Alexander Baumgarten
c0486f6768
Feature/r tximportdata (#19902)
* # FIXME: Add a list of GitHub accounts to
    # FIXME: Add a list of GitHub accounts to
Package for r-tximportData

* Fixed file format / flake8 errors
2020-11-13 14:14:36 -06:00
fodinabor
472c365b58
binutils: Fix checksum for 2.35.1 (#19901)
As noted in #19899 and introduced by #19827
2020-11-13 12:55:58 -06:00
Thomas Madlener
d5b89b422d
Add sio and add it as possible dependency for podio (#19875)
Newest podio can use SIO as backend
2020-11-13 12:43:43 -06:00
arjun-raj-kuppala
fbde1abc8c
AMD ROCm - HIP update and bump up version to 3.9.0 for rccl,debug agent, hip-rocclr and atmi (#19832)
* AMD - Bumped up version for hip-rocclr, rocm-opencl, rocm-smi-lib

* AMD ROCm - HIP update and bump up version to 3.9.0 for rccl,debug agent, hip-rocclr and atmi

* Update package.py

* Update package.py

* Update package.py

* Update var/spack/repos/builtin/packages/hip/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-13 12:25:57 -06:00
eugeneswalker
3a3bf5387e
suite-sparse: mpfr, gmp needed for @5.8.0: (#19898) 2020-11-13 10:12:02 -08:00
Sreenivasa Murthy Kolam
b08744566d
bump up version for 3.9.0 (#19894) 2020-11-13 10:59:18 -06:00
t-nojiri
d2673ac56c
openfoam: Fix for aarch64 (#19803)
* openfoam: Fix for aarch64

* openfoam: Add comment for openfoam-org
2020-11-13 10:45:42 -06:00
Ganesh Kumar
d40a35e8d7
ROCm 3.9 Stage2 recipe (#19838)
Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
2020-11-12 23:04:19 -06:00
Joseph Schoonover
d346e877ef
Add feq-parse package (#19891)
Co-authored-by: Joe Schoonover <joe@fluidnumerics.com>
2020-11-12 22:31:04 -06:00
Tim Haines
a1e9d584e1
binutils: add version 2.35.1 (#19827) 2020-11-12 19:05:24 -06:00
Robert Blake
aeafe18b49
openmpi: external detection support (#18600) 2020-11-12 13:03:35 -08:00
Adam J. Stewart
f46bd411f4
py-cython: python is a link dep (#19768) 2020-11-12 12:53:13 -08:00
Adam J. Stewart
2fc2a4cd2a
py-matplotlib: set LIBRARY_PATH to locate link deps (#19855)
* py-matplotlib: set LIBRARY_PATH to locate link deps

* py-matplotlib: add v3.3.3
2020-11-12 12:50:44 -08:00
Adam J. Stewart
37e51eb2a5
OpenSSL: libs may be in lib64 directory (#19862) 2020-11-12 12:45:45 -08:00
vvolkl
72e66bd01f
[gaudi] v35r0 (#19878)
* [gaudi] v35r0

* [gaudi] format

* [gaudi] comments from #19878
2020-11-12 14:43:06 -06:00
tcojean
978e85d669
Add smoke tests to Ginkgo. (#19888) 2020-11-12 14:42:34 -06:00
eugeneswalker
81cab3b271
suite-sparse: add deps: mpfr, gmp (#19883) 2020-11-12 11:29:07 -08:00
Morten Kristensen
8cf2806f00
py-vermin: add latest version 1.0.3 (#19886) 2020-11-12 13:23:38 -06:00
Wouter Deconinck
b0d2586f52
[acts] conflicts with %gcc@:7 since @0.23: due to c++17 <charconv> (#19881) 2020-11-12 13:08:12 -06:00
Brian Spilner
2a8dba48da
new release: cdo-1.9.9 (#19876) 2020-11-12 11:29:57 -06:00
t-nojiri
301b94d338
elpa: Fix for aarch64 (#19872) 2020-11-12 11:24:45 -06:00
Satish Balay
757b74aeff
xsdk@0.6.0 (#19846)
Update:
 hypre@2.20.0
 mfem@4.2.0
 superlu-dist@6.4.0
 trilinos@13.0.1
 datatransferkit@3.1-rc2
 petsc@3.14.1
 dealii@9.2.0
 pflotran@xsdk-0.6.0
 alquimia@xsdk-0.6.0
 sundials@5.5.0
 plasma@20.9.20
 magma@2.5.4
 amrex@20.10
 slepc@3.14.0
 omega-h@9.32.5
 strumpack@5.0.0
 pumi@2.2.5
 tasmanian@7.3
 phist@1.9.3
 ginkgo@1.3.0
 py-libensemble@0.7.1
 precice@2.1.1
 butterflypack@1.2.1

New:
 heffte@2.0.0
 slate@2020.10.00

Variants:
 datatransferkit
 heffte
 slate

petsc: enable +cuda
sundials: enable +cuda +trilinos
strumpack: enable +cuda
2020-11-12 11:15:29 -06:00
Desmond
9f7ad82665
Package/r bigalgebra (#19826)
* py-json-get: new package at 1.1.1

* py-json-get: new package at 1.1.1

* r-bigalgebra: new package at 0.8.4

* r-bigalgebra: new package at 0.8.4 with corrections

* Added an additional change to tarball and dependencies

* removing accidentally added file

* Added tarball that uses mirror and removed redundant dependencies

* Fixed version and added dep.

* Updated checksum

* Fixed urls

* Added list_url

Co-authored-by: las_djorton <las_djorton@build.las.iastate.edu>
2020-11-12 11:13:20 -06:00
Pieter Ghysels
d1493fb3d8
SuperLU-Dist: Add CUDA variant (#19847)
* Add CUDA support to superlu-dist

* Use spec['cuda'].libs.directories[0] iso spec['cuda'].prefix.lib
so it works for both lib and lib64

The suggested:
args.append('-DTPL_CUDA_LIBRARIES=' +
            spec['cuda'].libs.ld_flags)
did not work because it does not link with cuBLAS.
2020-11-12 08:57:44 -06:00
Jean-Paul Pelteret
821b195ba4
Fix scalapack build error (#19824) 2020-11-12 08:55:58 -06:00
Satish Balay
a99cc0fac0
kokkos add "graviton" to spack_micro_arch_map (#19869)
* kokkos add "graviton" to spack_micro_arch_map

* also add "graviton2"
2020-11-12 08:55:37 -06:00
Dr. Christian Tacke
b9f20c2351
yaml-cpp: Improve shared library building (#19866)
* No version of yaml-cpp in spack can build shared AND
  static libraries at the same time.  So drop the "static"
  variant and let "shared" handle that alone.

  Or in other words: No version handles the
  BUILD_STATIC_LIBS flag.

* The flag for building shared libraries changed from
  BUILD_SHARED_LIBS to YAML_BUILD_SHARED_LIBS at some
  point. So just pass both flags.

* Use the newer define_from_variant.
2020-11-11 20:05:58 -06:00
Dr. Christian Tacke
2929f59c03
msgpack-c: Add Version 3.1.1 (#19863) 2020-11-11 12:27:28 -06:00
Jen Herting
3dab441986
New package: py-cuml (#19474)
* [py-cuml] created template

* [py-cuml] setup phases and added build_directory

* [py-cuml] added dependencies

* [py-cuml] depends on libcumlprims

* [py-cuml] requiring multigpu version

* [py-cuml] figuring out the best way to get concretization to happen cleanly

* [py-cuml] removed singlegpu variat from libcuml

* [py-cuml] depends on py-cudf

* [py-cuml] depends on cupy

* [py-cuml] fixed typoo

* [py-cuml] depends on py-scipy

* [py-cuml] depends on py-treelite

* [py-cuml] py-treelite is now a variant of treelite

* [py-cuml] depends on joblib

* [py-cuml] depends on py-scikit-learn

* [py-cuml] flake8

* [py-cuml] added homepage and description. removed fixmes

* [py-cuml] updated checksum
2020-11-11 12:27:12 -06:00
Filippo Spiga
e828641d80
Adding support to build ucx development branch (#18089)
* Enabling build of v1.9.x development branch.

* v1.8.1 is the preferred (stable) version.

* Fixing code style

Co-authored-by: Filippo Spiga <fspiga@nvidia.com>
Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-11 10:58:29 -06:00
Jen Herting
b660a2112f
New package: libcuml (#19471)
* [libcuml] created template

* [libcuml] set cmake list dir

* [libcuml] added some dependencies

* [libcuml] adding some default cmake args

* [libcuml] depends on nccl

* [libcuml] temporarily disabling cuml prims building

* [libcuml] building internal faiss?

* [libcuml] added dependency treelite

* [libcuml] depends on google_test

* [libcuml] forcing single gpu per: https://github.com/rapidsai/cuml/issues/2528#issuecomment-657675957

* [libcuml] added prims?

* [libcuml] adding libcumlcomms ?

* Revert "[libcuml] adding libcumlcomms ?"

This reverts commit 0e0765b7d4d27bdc01d54d24e8c2f9eac1cb4eb2.

* Revert "[libcuml] added prims?"

This reverts commit d0b1f868ea5e425cc7d1a5ce7adc642258dfc38e.

* [libcuml] added varient single gpu

* [libcuml] removed variant singlegpu

* [libcuml] added homepage and description. removed fixmes

* [libcuml] flake8

* [libcuml] cleaning up leftover commented out code

* [libcuml] updated checksum added ucx dependency
2020-11-11 10:55:57 -06:00
Sreenivasa Murthy Kolam
f5c7a3619a
add spack recipe for rocm version of the tensile (#19669)
* add spack recipe for rocm version of the tensile

* fix flake8 error
2020-11-11 10:55:23 -06:00
Greg Becker
229fc11fdb
axom: devtools require llvm clang-format (#19740)
* follow-up to previous PR

* build type
2020-11-11 10:54:24 -06:00
vvolkl
2c55d47c1e
[podio] set pythonpath correctly (#19779)
* [podio] put python dir in python path

* Update var/spack/repos/builtin/packages/podio/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-11 10:53:56 -06:00
Kai Torben Ohlhus
a6011ccbb7
suite-sparse: add versions 5.8.0 and 5.8.1 (#19812)
Update homepage URL and see release notes:
- https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.1
- https://github.com/DrTimothyAldenDavis/SuiteSparse/releases/tag/v5.8.0
2020-11-11 10:53:27 -06:00
t-nojiri
48093350c6
arbor: Add version 0.4 (#19839) 2020-11-11 10:50:32 -06:00
Stephen Hudson
56df3fcbaa
Add optional deps mpmath and deap to py-libensemble (#19852) 2020-11-11 10:45:16 -06:00
Keita Iwabuchi
8edd245bb3
Metall package: add v0.6 (#19854)
* Metall: add version 0.2

* Add Metall v0.3

* Update Metall package to v0.4 and v0.5.

* Metall package: add v0.6
2020-11-11 10:43:00 -06:00
t-nojiri
3167aec0ab
ace: Add version 6.5.12 (#19856) 2020-11-11 10:42:30 -06:00
Mark Olesen
a90324a5b2
openfoam: remove mplibUSER provisioning (#19861)
- has never been used by the spack package or by the upstream package

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-11-11 10:38:50 -06:00
Ganesh Kumar
b1ca2a4346
ROCm3.9 recipe for rocblas, hipblas & rocsolver (#19841)
* ROCm3.9 recipe for rocblas, hipblas & rocsolver

* review comments

* review comments

Co-authored-by: root <root@mlseqa-hyd-virt-srv-07.amd.com>
2020-11-11 10:24:25 -06:00
Justin S
15fbbdea7d
soapdenovo2: add 242 (#19849) 2020-11-10 20:12:28 -06:00
Christoph Junghans
f7e3ef1b5c
votca-xtp: update deps (#19850) 2020-11-10 15:01:25 -07:00
t-nojiri
dd96a86511
abi-dumper: Add phases (#19807) 2020-11-10 12:53:39 -06:00
Phil Tooley
db5aa927db
py-torchvision: gather correct cuda_arch setting from py-torch (#19845)
* py-torchvision: gather correct cuda_arch setting from py-torch dependency

* py-torchvision: remove unneeded variant
2020-11-10 12:28:01 -06:00
Daryl W. Grunau
f7f4171d4e
py-scipy: set F90 for all compilers (#19818)
* set F90 when compiling with Intel

* set F90 for all compilers

Co-authored-by: Daryl W. Grunau <dwg@lanl.gov>
2020-11-10 10:52:54 -06:00
Wouter Deconinck
2913903e6a
[geant4] depends_on glu when +opengl (#19821) 2020-11-10 10:29:21 +00:00
Adam J. Stewart
65cef0a3ad
py-gpytorch: add v1.2.1 (#19796) 2020-11-09 20:24:35 -05:00
h-denpo
d8d0935a24
saga-gis: add "depends_on('libsm', type='link')" (#19805) 2020-11-09 16:46:33 -06:00
Kai Torben Ohlhus
4e2f27141c
openblas: Add versions 0.3.11 and 0.3.12 (#19811)
[OpenBLAS 0.3.11](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.11) and [OpenBLAS 0.3.12](https://github.com/xianyi/OpenBLAS/releases/tag/v0.3.12) were released.
2020-11-09 16:33:54 -06:00
Wouter Deconinck
f69643512c
[opencascade] depends_on libxext, libxmu, libxt, libxi (#19823)
* [opencascade] depends_on libxmu and libxi

* [opencascade] depends_on libxext and libxt
2020-11-09 16:24:51 -06:00
Satish Balay
01188396da
Trilinos: add 13.0.1 (#19822) 2020-11-09 16:06:27 -05:00
Erik Schnetter
9619f77550
spiral: new version 8.2.0 (#19794)
* spiral: new version 8.2.0

* spiral: Sort versions anti-chronologically
2020-11-09 14:32:49 -06:00
Toyohisa Kameyama
52eecad65c
py-pygps: new package. (#19774)
* py-pygps: new package.

* fixed url.
2020-11-09 14:32:10 -06:00
Morten Kristensen
a047ea84a3
py-vermin: add latest version 1.0.2 (#19820) 2020-11-09 14:31:21 -06:00
Satish Balay
a0216922f1
add sundials 5.5.0 (#19819)
(with xsdk build fixes, including mkl, superlu-dist)

Co-authored-by: Cody J. Balos <balos1@llnl.gov>
2020-11-09 13:59:55 -06:00
Amjad Kotobi
04fdcbed09
ruby-narray: Added git master branch (#19817) 2020-11-09 13:04:22 -06:00
ilbiondo
740cc4058b
tskit package (#19725)
* tskit package

* Update var/spack/repos/builtin/packages/tskit/package.py

I can't see any hard requirement for 3.6:

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* fixes following PR review

* Update var/spack/repos/builtin/packages/tskit/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-09 13:03:09 -06:00
Ethan Stam
e73e7cf0ad
ParaView: correct path for PARAVIEW_VTK_DIR (#19770)
* ParaView: correct path for PARAVIEW_VTK_DIR

* Update formatting
2020-11-09 13:02:00 -06:00
Mark Olesen
ac8a07ef4a
openfoam / openfoam-org : handle arch naming differences #19777 (#19778)
- issue caused by the openfoam-org internal naming for their
  newly added support for aarch64

Co-authored-by: Mark Olesen <Mark.Olesen@esi-group.com>
2020-11-08 20:26:51 -06:00
Michael Kuhn
0857648313
perl: make 5.32.0 the preferred version (#19799)
Version 5.32.0 has been out for quite a while and Linux distributions
are shipping it. I have also done a rebuild of some common packages with
the new version. Let's make it the preferred version.
2020-11-08 10:54:22 -06:00
Adam J. Stewart
1e35faa932
Bash: add new patches, maintainer (#19798) 2020-11-07 20:13:35 -06:00
mic84
765b4c5d2f
amrex: new options names for version > 20.11 (#19769)
* amrex: new options names for version > 20.11

* amrex: change option name DIM -> AMReX_SPACEDIM

* Update var/spack/repos/builtin/packages/amrex/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-07 14:10:08 -06:00
Brian Van Essen
9cd0f00607
Added code to help DiHydrogen find cuDNN and CUB (#19783)
* Added code to help DiHydrogen find cuDNN and CUB

* Cleaning up dependencies on CUB and adding guards for when newer
versions of CUDA include CUB and it should be excluded.

* Changed Hydrogen to disable half support by default.

* Have LBANN force Hydrogen and DiHydrogen to build without half when the variant is disabled.

* Added explicit variants to enusre that if LBANN is build without Cuda,
Aluminum, or Half support, it enforces those constraints for Hydrogen
and DiHydrogen.  Cleaned up the use of Python extend versus append in
LBANN and DiHydrogen recipes.

* Fixed Flake8
2020-11-07 14:09:00 -06:00
Michael Kuhn
887bf734e4
fdupes: new package (#19747) 2020-11-07 14:08:15 -06:00
vvolkl
1d7d4a9071
[evtgen] add env var (#19787)
* [evtgen] add env var

* Update var/spack/repos/builtin/packages/evtgen/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-07 14:06:41 -06:00
Itaru Kitayama
e87266c646
Add the scorep package dependency. (#19742)
Co-authored-by: Itaru Kitayama <itaru.kitayama@riken.jp>
2020-11-06 21:18:49 -06:00
Dr. Christian Tacke
c8b92ef34b
fmt: Add Version 7.1.2 (#19756) 2020-11-06 21:12:45 -06:00
Dr. Christian Tacke
3b4558fe6c
fairlogger: Add Version 1.9.0 (#19758) 2020-11-06 21:12:19 -06:00
Chen Wang
d085d53ebc
New version of Recorder: 2.1.6 (#19760) 2020-11-06 21:11:49 -06:00
eugeneswalker
fbc7cefcf7
make TIMER compatible with LLVM F18 (#19765) 2020-11-06 21:11:13 -06:00
Thomas Madlener
381305da0f
[root] fix package definition (#19775) 2020-11-06 21:04:23 -06:00
darmac
1d52bbdf17
Add new package: predixy (#19776) 2020-11-06 21:03:33 -06:00
Andrew W Elble
dcf3d8332a
cp2k: fix lmax variant to use tuple (#19780)
* cp2k: fix lmax variant to use tuple

discovered during testing #19501

@dev-zero

* retain conversion to string
2020-11-06 20:58:38 -06:00
Cyrus Harrison
ef9b8da282
add new vtk-h versions (#19785) 2020-11-06 20:53:36 -06:00
eugeneswalker
8dc8155ed5
fast-global-file-status needs elf (#19789) 2020-11-06 20:52:19 -06:00
eugeneswalker
73773ef9f3
spot: add v2.9.4 (#19790) 2020-11-06 20:51:48 -06:00
Michael Kuhn
f447657395
expat: add 2.2.10 (#19791) 2020-11-06 20:51:04 -06:00
Michael Kuhn
d8f2e54ebf
py-setuptools: add 50.3.2 (#19792) 2020-11-06 20:50:17 -06:00
Michael Kuhn
010ad6011e
glib: add 2.66.2 and 2.64.6 (#19793) 2020-11-06 20:49:21 -06:00
Tom Payerle
07b1ddee23
virtualgl: Change virtual jpeg dependency to libjpeg-turbo dep (#19795)
See #19784

virtualgl CMake system is looking for a specific libjpeg-turbo include
file, not present in libjpeg (currently the only other jpeg provider)
2020-11-06 20:47:09 -06:00
Adam J. Stewart
319c4f2e9e
meson: set STRIP on macOS (#19677)
* at-spi2-core: add new version

* Add strip hacks

* meson: set STRIP on macOS
2020-11-07 00:34:47 +01:00
ilbiondo
a3854700fb
cget package (#19728)
* cget package

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

* Update var/spack/repos/builtin/packages/cget/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-06 16:39:42 -06:00