Commit graph

18004 commits

Author SHA1 Message Date
ilbiondo
ab046403f6
admixtools package (#19727) 2020-11-04 12:37:15 -06:00
Satish Balay
5b02910e9c
petsc add version 3.14.1 (#19730) 2020-11-04 12:27:11 -06:00
Veselin Dobrev
5511c29869
New MFEM version: 4.2 (#19684) 2020-11-04 12:26:39 -06:00
Robert Maynard
823a3fa646
Added HIP support to VTK-m package (#19523) 2020-11-04 12:25:17 -06:00
Satish Balay
c2b943c209
Trilinos: fix error when configuring downstream dependency 2020-11-04 11:28:14 -05:00
darmac
44d406a1aa
Add new package: abi-compliance-checker (#18737)
* Add new package: abi-compliance-checker

* refine dependencies

* change exuberant-ctags to universal-ctags
2020-11-04 14:37:24 +01:00
Andrew W Elble
efb26bb14f
libusb: disable udev (#19713)
* libusb: disable udev

spack has no libudev/systemd package currently

* convert to AutotoolsPackage

* remove spack import
2020-11-03 16:47:38 -06:00
Andrew W Elble
ddd2aa0ffc
sirius,spfft: fix defaults for amdgpu_target to be str, not tuple (#19660) 2020-11-03 12:43:16 -06:00
Glenn Johnson
6bcb7128e6
Regenerate patch for gate to include SGE script (#19663)
The previous patch left out the SGE.script file.
2020-11-03 12:42:40 -06:00
Glenn Johnson
4ba7ad5162
New package - gatepet2stir (#19664) 2020-11-03 12:41:47 -06:00
Sreenivasa Murthy Kolam
e93ac1a8bd
bump up hsakmt-roct ,hsa-rocr-dev,llvm-amdgpu version for 3.9.0 release (#19668)
* bump up version for 3.9.0 release

* update version of rocminfo for rocm-3.9.0

* bump up rocm-cmake version for rocm-3.9.0

* bump up rocm-smi and rocmdevice-libs for 3.9.0

* bumpup comgr version for rocm_ 3.9.0

* bump rocm-clang-ocl for rocm-3.9.0

* bump hipify-clang for rocm-3.9.0
2020-11-03 12:39:40 -06:00
Andrew W Elble
886ae9a83f
speexdsp: fix link dependency on FFT library (#19714)
without this, the library does not have a dependency
on the fft lib it was built with.
2020-11-03 12:36:24 -06:00
Desmond
95d63afa58
Package/py json get (#19689)
* py-json-get: new package at 1.1.1

* py-json-get: new package at 1.1.1

Co-authored-by: las_djorton <las_djorton@build.las.iastate.edu>
2020-11-03 12:35:26 -06:00
Andrew W Elble
b9d12c93ef
disable tests to fix build. (#19697) 2020-11-03 12:34:17 -06:00
mic84
001f90f411
amrex: new version 20.11 (#19691)
* amrex: new version 20.11

* Fix formatting issues
2020-11-03 12:33:45 -06:00
Geoffrey Oxberry
2c511a7dd0
new package: fprettify 0.3.6 (#19699) 2020-11-03 12:31:29 -06:00
Andrew W Elble
11fb0e17b0
py-pygobject: new version 3.38.0 (#19709)
fix to allow Gtk and others work from 'import gi' etc.
2020-11-03 12:29:59 -06:00
darmac
cefbc39356
Add new package: libbinio (#19706) 2020-11-03 12:27:45 -06:00
darmac
ffec64ce30
Add new package: jose (#19707) 2020-11-03 12:27:22 -06:00
darmac
b7421c1476
Add new package: libdatrie (#19708) 2020-11-03 12:26:54 -06:00
Daniel Arndt
6492b9a84e
Use commit instead of branch as version for dtk 3.1-rc2 (#19712) 2020-11-03 12:25:26 -06:00
Char Aznable
859fbae4fa
Trilinos: support cuda, hwloc, Kokkos_ARCH_* and c++ std (#19119) 2020-11-03 12:07:20 -06:00
Elliot Saba
771e8b6294
[julia]: CPU names are LLVM-style, must map across (#19549)
In this case, the `zen2` architecture is unknown; Spack must use the
LLVM-style `znver2` target instead.
2020-11-03 12:04:29 -06:00
Pieter Ghysels
8cc08bd88b
Trilinos: Add STRUMPACK dependency (#19560)
* Trilinos: Add STRUMPACK dependency

* break long lines, flake8 cleanup

* Use spec['strumpack'].libs.directories[0]
instead of spec['strumpack'].prefix.lib
because libraries may be in lib or lib64.

Likewise use headers.directories[0] iso prefix.include.

Suggested by adamjstewart
2020-11-03 12:04:12 -06:00
Wouter Deconinck
cd625e5974
[dire] dire is included in pythia8@8300: so dire depends_on adjusted (#19628) 2020-11-03 12:03:48 -06:00
Geoffrey Gunter
125b80d193
range-v3: add version 0.11.0 (#19639)
* range-v3: add version 0.11.0

This release drops support for llvm-3.9 per the release notes.

https://github.com/ericniebler/range-v3/releases/tag/0.11.0

* range-v3: rename 'develop' version to 'master'

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-03 12:03:19 -06:00
Satish Balay
dc3d03ed30
superlu-dist: update to version 6.4.0 (#19682) 2020-11-03 12:02:53 -06:00
Satish Balay
5b33157a45
petsc@3.14 update superlu-dist dependency [keep it open-ended for both petsc and superlu-dist future versions] (#19686) 2020-11-03 12:01:14 -06:00
Satish Balay
294715282a
py-petsc4py: add version 3.14.0 (#19681) 2020-11-03 12:00:50 -06:00
Tim Haines
7649186988
Elfutils: added v0.182 (#19700) 2020-11-03 16:37:35 +01:00
darmac
a920ef50dd
Add new package: istio (#17829) 2020-11-03 08:19:43 -06:00
darmac
5a54e39d71
Add new package: py-boom (#18811)
* Add new package: py-boom

* change name to py-boom-boot-manager
2020-11-03 08:18:28 -06:00
Shahzeb Siddiqui
75e73d7fcc
documentation: fix formatting of code-block section (#19693) 2020-11-03 12:15:46 +01:00
dunatotatos
4637d97d41
snakemake: add upper limit to allowed python versions (#19705)
Running v3.1.2 with Python 3.7 returns a SyntaxError close to `async=True`.
2020-11-03 12:13:00 +01:00
darmac
03b7404316
Add new package: abi-dumper (#18738)
* Add new package: abi-dumper

* refine dependencies
2020-11-03 11:20:06 +01:00
Brian Van Essen
d38fdb3854
Update cuDNN packages to check Power installation (#19620)
* Updated cuDNN package to check to make sure that target directory
exists before linking it.

* Fixed flake8

* Fixed Flake8
2020-11-02 20:08:44 -06:00
Hervé Yviquel
b4ea74c11b
allow ucx to build with more recent version of gdrcopy (#19606)
* allows UCX since v1.7 to build with more recent version of gdrcopy (v2.X)

* Update var/spack/repos/builtin/packages/ucx/package.py

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-02 15:53:11 -06:00
Todd Gamblin
ecc3bfd484
Bugfix - hashing: don't recompute full_hash or build_hash (#19672)
There was an error introduced in #19209 where `full_hash()` and
`build_hash()` are called on older specs that we've read in from the DB;
older specs may not be able to compute these hashes (e.g. if they have
removed patches used in computing the full_hash).

When serializing a Spec, we want to generate the full/build hash when
possible, but we need a mechanism to skip it for Specs that have
themselves been read from YAML (and may not support this).

To get around this ambiguity and to fix the issue, we:

- Add an attribute to the spec called `_hashes_final`, that is `True`
  if we can't lazily compute `build_hash` and `full_hash`.
- Set `_hashes_final` to `False` for new specs (i.e., lazily
  computing hashes is ok)
- Set `_hashes_final` to `True` for concrete specs read in via
  `from_node_dict`, as it may be too late to recompute hashes.
- Compute and write out all hashes in `node_dict_with_hashes` *if
  possible*.

Effectively what this means is that we can round-trip specs that are
missing `_build_hash` and `_full_hash` without recomputing them, but for
all new specs, we'll compute them and store them. So Spack should work
fine with old DBs now.
2020-11-02 13:21:11 -08:00
Satish Balay
2ca894bd1e
pumi add version 2.2.5 (#19680) 2020-11-02 14:02:50 -06:00
Satish Balay
4d6c9a8f29
omega-h: add version 9.32.5 (#19679) 2020-11-02 12:50:10 -06:00
Seth R. Johnson
62eab8923e
ROOT: use native CMakePackage functions in packages.py (#19642)
* root: update to built-in CMakePackage functions

* root: Disable options from missing variants

* Remove modification of CMAKE_PROGRAM_PATH
2020-11-02 16:21:44 +00:00
Scott McMillan
f621e97f47
Fix issue with NAMD patch not applying cleanly (#19675)
Co-authored-by: Scott McMillan <smcmillan@nvidia.com>
2020-11-02 10:12:15 -06:00
Tiziano Müller
acc075d79d
llvm: fix +lldb build with external ncurses on openSUSE (#19627)
fixes #19625
2020-11-02 07:39:21 -06:00
Harmen Stoppels
4fe56de72e
hip: revert using libs.directories[0] instead of prefix.lib (#19671)
Currently fails with:

 Error: NoLibrariesError: Unable to recursively locate rocm-device-libs libraries
2020-11-02 09:54:29 +01:00
eugeneswalker
b2d6c63421
hip: setup run environments (#19637)
* hip: rocminfo is a runtime requirement

* hip: +setup_run_environment, +setup_dependent_run_environment

* hip: run environment: get lib dir using libs.directories[0], not prefix.lib

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>

Co-authored-by: Adam J. Stewart <ajstewart426@gmail.com>
2020-11-01 21:52:06 -06:00
Todd Gamblin
a80d221bfa sbang: fixes for sbang relocation
This fixes sbang relocation when using old binary packages, and updates
code in `relocate.py`.

There are really two places where we would want to handle an `sbang`
relocation:

1. Installing an old package that uses `sbang` with shebang lines like
   `#!/bin/bash $spack_prefix/sbang`
2. Installing a *new* package that uses `sbang` with shebang lines like
   `#!/bin/sh $install_tree/sbang`

The second case is actually handled automatically by our text relocation;
we don't need any special relocation logic for new shebangs, as our
relocation logic already changes references to the build-time
`install_tree` to point to the `install_tree` at intall-time.

Case 1 was not properly handled -- we would not take an old binary
package and point its shebangs at the new `sbang` location. This PR fixes
that and updates the code in `relocation.py` with some notes.

There is one more case we don't currently handle: if a binary package is
created from an installation in a short prefix that does *not* need
`sbang` and is installed to a long prefix that *does* need `sbang`, we
won't do anything. We should just patch the file as we would for a normal
install. In some upcoming PR we should probably change *all* `sbang`
relocation logic to be idempotent and to apply to any sort of shebang'd
file. Then we'd only have to worry about which files to `sbang`-ify at
install time and wouldn't need to care about these special cases.
2020-11-01 16:23:48 -08:00
Adam J. Stewart
a4dd8d5582
Scalapack: don't apply patches twice (#19662) 2020-11-01 15:15:04 -08:00
Adam J. Stewart
ea8ba48a32
meson: add new version, external find support (#19658) 2020-11-01 15:33:14 -06:00
Adam J. Stewart
750027e80f
libepoxy: remove meson dependency (#19659) 2020-11-01 16:11:46 -05:00
Adam J. Stewart
854aed2571
krb5: fix build with Apple Clang 12 (#19657) 2020-11-01 16:11:40 -05:00