Commit graph

12717 commits

Author SHA1 Message Date
Rob Latham
d93cacfa5c libfabric: new upstream release 1.8.1 (#13053) 2019-10-09 22:24:17 -05:00
wspear
c8289fcd90 Added latest versions of SQLAlchemy 1.3.X, 1.2.X and 1.1.X (#13078)
* Added latest versions of SQLAlchemy 1.3.X, 1.2.X and 1.1.X

* Added missing dependencies
2019-10-09 22:23:55 -05:00
wspear
e7e67fdfec Added latest versions to py-traitlets (#13079)
* Added latest versions to py-traitlets

* Added missing dependencies
2019-10-09 22:23:33 -05:00
Francesco Di Natale
4ef64b64d1 Add new versions of py-maestrowf (#13081)
* Addition of 1.1.3 and 1.1.4

* Addition of conditional enum-34 installation.

* Update var/spack/repos/builtin/packages/py-maestrowf/package.py

Addition of versioning for pyyaml.

Co-Authored-By: Adam J. Stewart <ajstewart426@gmail.com>

* Addition of enum34 back to older versions 1.1.3 and below.
2019-10-09 22:23:19 -05:00
Michael Kuhn
2e2b1a5e02 qt: Add 5.13.1 and missing zlib flags (#13109) 2019-10-09 22:22:52 -05:00
Patrick Gartung
5b879459c7
Buildcache: pass string.encode('utf-8') for old_dir and new_dir to replace_prefix_bin. (#13114)
This should fix a Python3 error from concatenating strings and bytes.
2019-10-09 20:36:47 -05:00
Michael Kuhn
469bef880a mysql: Add missing dependencies (#12717)
This also changes the default for cxxstd from 98 to 14 because (at
least) newer versions of mysql do not compile with 98 (tested with
gcc@9).
2019-10-09 14:45:31 -05:00
Massimiliano Culpo
acbb2af528 "No Spack mirror configured": demoted the warning to a debug message (#13082)
fixes #12010
2019-10-09 07:13:37 -05:00
Toyohisa Kameyama
b0bf528ab3 perl-perlio-gzip: add zlib dependency. (#13060) 2019-10-08 20:51:39 -05:00
Toyohisa Kameyama
529d0f3e37 psmc: add zlib dependency. (#13061) 2019-10-08 20:51:04 -05:00
Toyohisa Kameyama
f1e1693a6a seqprep: add zlib dependency. (#13062) 2019-10-08 20:50:51 -05:00
Toyohisa Kameyama
fdc91a1705 tabix: add zlib dependency. (#13064) 2019-10-08 20:48:37 -05:00
wspear
2e4bcf223c Added py-certipy package. Dependency of py-jupyterhub. (#13068)
* Added py-certipy package. Dependency of py-jupyterhub.

* Changed url to pypi
2019-10-08 20:48:11 -05:00
Nichols A. Romero
2794e52ddd QMCPACK Oct2019 fix buglets (#13069)
* Support different CMake build types correctly.

* LIBXML2 variables no longer used.

* Fix E501 as part of https://github.com/spack/spack/pull/13069
2019-10-08 20:46:15 -05:00
wspear
8de453af54 Fixed hash of version .0.5 and added latest version (.0.7.1) (#13077) 2019-10-08 20:43:44 -05:00
Mark Olesen
e3f69f8ce6 Build older openfoam (#13071)
* adjust building of OpenFOAM 1806 and earlier

- spack now unpacks into spack-src, but earlier OpenFOAM versions
  still expect particular directory names (eg, OpenFOAM-v1806).

  Resolve by creating a symlink during patching.

* replace openfoam 1806 patch with URL version
2019-10-08 20:42:44 -05:00
wspear
6a99b7e262 Added py-pamela package. Dependency of py-jupyterhub. (#13075) 2019-10-08 20:08:32 -05:00
George Hartzell
4377cc7066 Add headsup note re cryptsetup patch for v2.2.2 (#13076) 2019-10-08 20:07:38 -05:00
Massimiliano Culpo
1213aec7ed travis: bump python version for flake8 and build tests 2019-10-08 16:06:32 -07:00
Phil Carns
66b9009a07 pmdk: added v 1.7 (#13067) 2019-10-08 09:19:27 +02:00
Adam J. Stewart
72d8febc4e Add macOS Catalina support (#13070) 2019-10-07 23:59:33 -07:00
Oliver Breitwieser
9600eb4f5a py-apipkg: Fix mix up of checksums (#13066)
Change-Id: Ibae329c5a6cf7e3741a879612da523e11e3b0ab9
2019-10-07 20:55:22 -05:00
Massimiliano Culpo
9faee51e22 Spack environments can concretize specs together (#11372)
This PR adds a 'concretize' entry to an environment's spec.yaml file
which controls how user specs are concretized. By default it is
set to 'separately' which means that each spec added by the user is
concretized separately (the behavior of environments before this PR).
If set to 'together', the environment will concretize all of the
added user specs together; this means that all specs and their
dependencies will be consistent with each other (for example, a
user could develop code linked against the set of libraries in the
environment without conflicts).

If the environment was previously concretized, this will re-concretize
all specs, in which case previously-installed specs may no longer be
used by the environment (in this sense, adding a new spec to an
environment with 'concretize: together' can be significantly more
expensive).

The 'concretize: together' setting is not compatible with Spec
matrices; this PR adds a check to look for multiple instances of the
same package added to the environment and fails early when
'concretize: together' is set (to avoid confusing messages about
conflicts later on).
2019-10-07 09:53:23 -07:00
Adam J. Stewart
c8c795e7db watch: added new package (#13044) 2019-10-07 11:11:17 +02:00
Paul
7d0e7efabb Added go 1.13.1 and 1.12.10 (#12977) 2019-10-06 20:22:05 -05:00
Denis Davydov
79bd6bbd04 gnuplot: add 5.2.7 and fix qt dep (#13058) 2019-10-06 14:28:34 -05:00
Matthias Wolf
3d247d9567 freeimage: new package (#13049)
* freeimage: new package

* Address comments.

* Whitespace
2019-10-06 09:20:29 -05:00
Ruben Di Battista
ba72114ba2 unrar: Add package (#12908) 2019-10-06 09:16:25 -05:00
Oliver Breitwieser
f34162a5b8 Add missing py-contextlib2 (#13056)
Change-Id: I8e0a90d4aa2c9f46230a6fe35ce5f4fa44672faf
2019-10-06 09:15:29 -05:00
Denis Davydov
070a536e49 qt: help pick up dependencies (#11172)
* qt: help pick up dependencies

* qt: add 5.12.5
2019-10-05 21:13:38 -05:00
Pariksheet Nanda
19e6f55647 doc: fix #12245 non-functional libdwarf dependency (#12515)
Applying accepted fix from spack/spack.io#4
2019-10-05 21:07:18 -05:00
Michael Kuhn
bdb92f2d91 Consistently support pkg-config files in share subdirectory (#12838)
While the build environment already takes share/pkgconfig into account,
the generated module files etc. only consider lib/pkgconfig and
lib64/pkgconfig.
2019-10-05 21:03:35 -05:00
t-karatsu
c6b8d79ea6 Package/fujitsu mpi (#12807)
* fujitsu-mpi: commit new package

* Add homepage.

* * Modified the MPI commands to a simple form.
* Unnecessary processing has been deleted.

* Add conflict for all compilers except the Fujitsu compiler.

* Fix typo.

* Delete versions.

* Delete conditions for specifying the Fujitsu compiler.
2019-10-05 20:58:43 -05:00
Adam J. Stewart
608f732101
expect: fix darwin install name (#13042)
* expect: fix darwin install name

* Fix expect binary as well
2019-10-05 20:37:44 -05:00
Teodor Nikolov
e78ca66087 New package: cxxopts (#13035)
* New package: cxxopts

* Use +unicode instead of unicode=True

- Make the unicode option more explicit

* [cxxopts] Fix white space warnings
2019-10-05 20:36:59 -05:00
Adam J. Stewart
c45ecafd71 procps: new package (#13043) 2019-10-05 11:39:55 +02:00
Massimiliano Culpo
6a1021b81c bugfix: issue with custom dotkit root in config.yaml (#13046)
When removing support for dotkit in #11986 the code trying to set the
paths of the various module files was not updated to skip it. This
results in a failure because of a key error after the deprecation
warning is displayed to user.

This commit fixes the issue and adds a unit test for regression.
Note that code for Spack chains has been updated accordingly but
no unit test has been added for that case.
2019-10-04 23:42:21 -07:00
Federico Ficarelli
a362cf5ff6 grpc: new package (#13054)
* Add grpc@1.23.1

* Let version in url match actual one
2019-10-04 18:42:09 -05:00
Andreas Baumbach
e366f6ba39 llvm: update link to the document explaining codesign (#13047)
Change-Id: I01242cbb43b0c62a659739a5d7e9d998dd27e794
2019-10-04 13:31:43 -07:00
Robert Maynard
b1cdf8bd57 Update the VTK-m package with better defaults and cuda corrections (#12850) 2019-10-04 15:12:58 -04:00
Cody Balos
3cb4547348 superlu-dist: add openmp variant (#13052) 2019-10-04 13:48:56 -05:00
Toyohisa Kameyama
cb89949018 migrate: add zlib dependency. (#13039)
* migrate: add zlib dependency.

* flake8.

* autotools related tools change to build.
2019-10-04 13:14:09 -05:00
Felix Thaler
437236781d LLVM 9.0.0 (#13050) 2019-10-04 09:56:12 -07:00
Massimiliano Culpo
2cd800306d fftw: simplify the recipe and make use of specific targets (#12889)
* fftw: grouped precisions in a single variant

* fftw: simd options are now based on target features and not on variants

* fftw: simplified computing the selected precisions
2019-10-03 22:32:42 -05:00
t-karatsu
46e319ecd4 boost: Use gcc toolset for bootstrap with Fujitsu compiler. (#12876) 2019-10-03 22:20:55 -05:00
Toyohisa Kameyama
938bae1ab6 graphmap: add zlib dependency. (#13031) 2019-10-03 22:20:13 -05:00
Toyohisa Kameyama
b89fa3e01a fastqvalidator: add zlib dependency and Removes erroneous deletes in Chromosome (#13030) 2019-10-03 22:19:58 -05:00
Toyohisa Kameyama
4046e10b95 hapcut2: add zlib dependency. (#13032) 2019-10-03 22:19:43 -05:00
Toyohisa Kameyama
2233a7b493 liblbxutil: Add zlib dependency. (#13033) 2019-10-03 22:19:22 -05:00
Toyohisa Kameyama
bb1d0ff6fb metabat: Add zlib and ncurses dependency. (#13034) 2019-10-03 22:18:55 -05:00